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Author: Ran Blekhman

Rankings

  • All-time downloads: 69,974 (rank: 523 out of 382,293)
  • Categories:
    • bioinformatics: 8,334 (rank: 737 out of 32,752)
    • cancer biology: 2,172 (rank: 1,480 (tie) out of 26,332)
    • genomics: 41,214 (rank: 156 out of 40,708)
    • microbiology: 9,108 (rank: 805 out of 42,969)
    • scientific communication and education: 8,259 (rank: 44 out of 3,158)
    • systems biology: 887 (rank: 3,486 (tie) out of 11,249)

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Preprints

Common methods for fecal sample storage in field studies yield consistent signatures of individual identity in microbiome sequencing data

genomics more details view paper
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    • In genomics: 7 out of 5,693
  • Year to date:
    • Site-wide: 56,300 out of 89,194
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    • Site-wide: 63,236 out of 89,194

Tracking the popularity and outcomes of all bioRxiv preprints

scientific communication and education more details view paper
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    • Site-wide: 362 out of 89,194
    • In scientific communication and education: 10 out of 609
  • Year to date:
    • Site-wide: 968 out of 89,194
  • Since beginning of last month:
    • Site-wide: 3,743 out of 89,194

Challenges and recommendations to improve installability and archival stability of omics computational tools

bioinformatics more details view paper
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    • Site-wide: 697 out of 89,194
    • In bioinformatics: 119 out of 8,418
  • Year to date:
    • Site-wide: 8,731 out of 89,194
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    • Site-wide: 14,567 out of 89,194

Gut microbiota has a widespread and modifiable effect on host gene regulation

genomics more details view paper
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    • Site-wide: 1,211 out of 89,194
    • In genomics: 255 out of 5,693
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    • Site-wide: 25,757 out of 89,194
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    • Site-wide: 23,375 out of 89,194

Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance

microbiology more details view paper
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    • Site-wide: 1,488 out of 89,194
    • In microbiology: 134 out of 7,673
  • Year to date:
    • Site-wide: 982 out of 89,194
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    • Site-wide: 1,617 out of 89,194

BugBase Predicts Organism Level Microbiome Phenotypes

bioinformatics more details view paper
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    • In bioinformatics: 303 out of 8,418
  • Year to date:
    • Site-wide: 3,781 out of 89,194
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    • Site-wide: 5,234 out of 89,194

Variation in rural African gut microbiota is strongly correlated with colonization by Entamoeba and subsistence

microbiology more details view paper
  • Downloaded 1,731 times
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    • Site-wide: 4,638 out of 89,194
    • In microbiology: 288 out of 7,673
  • Year to date:
    • Site-wide: 60,128 out of 89,194
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    • Site-wide: 36,984 out of 89,194

Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment

cancer biology more details view paper
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    • Site-wide: 5,108 out of 89,194
    • In cancer biology: 123 out of 3,137
  • Year to date:
    • Site-wide: 38,482 out of 89,194
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    • Site-wide: 31,005 out of 89,194

HOMINID: A framework for identifying associations between host genetic variation and microbiome composition

genomics more details view paper
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    • Site-wide: 6,004 out of 89,194
    • In genomics: 976 out of 5,693
  • Year to date:
    • Site-wide: 52,599 out of 89,194
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    • Site-wide: 39,830 out of 89,194

Gut Microbiota Diversity across Ethnicities in the United States

microbiology more details view paper
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    • Site-wide: 6,877 out of 89,194
    • In microbiology: 408 out of 7,673
  • Year to date:
    • Site-wide: 33,497 out of 89,194
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    • Site-wide: 35,816 out of 89,194

Megaphage infect Prevotella and variants are widespread in gut microbiomes

microbiology more details view paper
  • Downloaded 1,330 times
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    • Site-wide: 7,140 out of 89,194
    • In microbiology: 427 out of 7,673
  • Year to date:
    • Site-wide: 22,603 out of 89,194
  • Since beginning of last month:
    • Site-wide: 74,632 out of 89,194

Ecological and evolutionary adaptations shape the gut microbiome of BaAka African rainforest hunter-gatherers

microbiology more details view paper
  • Downloaded 1,308 times
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    • Site-wide: 7,334 out of 89,194
    • In microbiology: 439 out of 7,673
  • Year to date:
    • Site-wide: 82,681 out of 89,194
  • Since beginning of last month:
    • Site-wide: 79,553 out of 89,194

Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment

genomics more details view paper
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    • Site-wide: 13,447 out of 89,194
    • In genomics: 1,807 out of 5,693
  • Year to date:
    • Site-wide: 80,446 out of 89,194
  • Since beginning of last month:
    • Site-wide: 81,236 out of 89,194

Interaction Between Host MicroRNAs and the Gut Microbiota in Colorectal Cancer

systems biology more details view paper
  • Downloaded 887 times
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    • Site-wide: 13,835 out of 89,194
    • In systems biology: 378 out of 2,308
  • Year to date:
    • Site-wide: 72,679 out of 89,194
  • Since beginning of last month:
    • Site-wide: 84,219 out of 89,194

Genetic and transcriptional analysis of human host response to healthy gut microbiome

genomics more details view paper
  • Downloaded 673 times
  • Download rankings, all-time:
    • Site-wide: 21,045 out of 89,194
    • In genomics: 2,432 out of 5,693
  • Year to date:
    • Site-wide: 83,450 out of 89,194
  • Since beginning of last month:
    • Site-wide: 84,770 out of 89,194

Interactions between the gut microbiome and host gene regulation in cystic fibrosis

genomics more details view paper
  • Downloaded 609 times
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    • Site-wide: 24,217 out of 89,194
    • In genomics: 2,664 out of 5,693
  • Year to date:
    • Site-wide: 25,476 out of 89,194
  • Since beginning of last month:
    • Site-wide: 45,602 out of 89,194

Distinct Microbes, Metabolites, and Ecologies Define the Microbiome in Deficient and Proficient Mismatch Repair Colorectal Cancers

cancer biology more details view paper
  • Downloaded 543 times
  • Download rankings, all-time:
    • Site-wide: 28,125 out of 89,194
    • In cancer biology: 888 out of 3,137
  • Year to date:
    • Site-wide: 63,080 out of 89,194
  • Since beginning of last month:
    • Site-wide: 49,017 out of 89,194

International authorship and collaboration across bioRxiv preprints

scientific communication and education more details view paper
  • Downloaded 458 times
  • Download rankings, all-time:
    • Site-wide: 34,709 out of 89,194
    • In scientific communication and education: 251 out of 609
  • Year to date:
    • Site-wide: 4,521 out of 89,194
  • Since beginning of last month:
    • Site-wide: 2,539 out of 89,194

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