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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,519 bioRxiv papers from 243,473 authors.

Author: Ran Blekhman

Rankings

  • All-time downloads: 59,003 (rank: 179 out of 243,473)
  • Categories:
    • bioinformatics: 6,199 (rank: 608 out of 21,552)
    • cancer biology: 1,861 (rank: 797 (tie) out of 13,599)
    • genomics: 39,832 (rank: 115 out of 28,107)
    • microbiology: 4,977 (rank: 98 out of 23,581)
    • scientific communication and education: 5,350 (rank: 61 (tie) out of 1,812)
    • systems biology: 784 (rank: 1,963 (tie) out of 7,239)

Downloads per author, site-wide

Preprints

Common methods for fecal sample storage in field studies yield consistent signatures of individual identity in microbiome sequencing data

genomics more details view paper
  • Downloaded 33,590 times
  • Download rankings, all-time:
    • Site-wide: 9 out of 52,519
    • In genomics: 3 out of 3,756
  • Year to date:
    • Site-wide: 1 out of 52,519
  • Since beginning of last month:
    • Site-wide: 40,266 out of 52,519

Tracking the popularity and outcomes of all bioRxiv preprints

scientific communication and education more details view paper
  • Downloaded 5,350 times
  • Download rankings, all-time:
    • Site-wide: 295 out of 52,519
    • In scientific communication and education: 13 out of 349
  • Year to date:
    • Site-wide: 25 out of 52,519
  • Since beginning of last month:
    • Site-wide: 402 out of 52,519

Challenges and recommendations to improve the installability and archival stability of omics computational tools

bioinformatics more details view paper
  • Downloaded 3,996 times
  • Download rankings, all-time:
    • Site-wide: 511 out of 52,519
    • In bioinformatics: 102 out of 5,498
  • Year to date:
    • Site-wide: 441 out of 52,519
  • Since beginning of last month:
    • Site-wide: 593 out of 52,519

Gut microbiota has a widespread and modifiable effect on host gene regulation

genomics more details view paper
  • Downloaded 3,280 times
  • Download rankings, all-time:
    • Site-wide: 752 out of 52,519
    • In genomics: 199 out of 3,756
  • Year to date:
    • Site-wide: 933 out of 52,519
  • Since beginning of last month:
    • Site-wide: 1,911 out of 52,519

BugBase Predicts Organism Level Microbiome Phenotypes

bioinformatics more details view paper
  • Downloaded 2,203 times
  • Download rankings, all-time:
    • Site-wide: 1,563 out of 52,519
    • In bioinformatics: 320 out of 5,498
  • Year to date:
    • Site-wide: 3,293 out of 52,519
  • Since beginning of last month:
    • Site-wide: 4,204 out of 52,519

Variation in rural African gut microbiota is strongly correlated with colonization by Entamoeba and subsistence

microbiology more details view paper
  • Downloaded 1,579 times
  • Download rankings, all-time:
    • Site-wide: 2,743 out of 52,519
    • In microbiology: 73 out of 4,108
  • Year to date:
    • Site-wide: 37,658 out of 52,519
  • Since beginning of last month:
    • Site-wide: 38,243 out of 52,519

Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment

cancer biology more details view paper
  • Downloaded 1,439 times
  • Download rankings, all-time:
    • Site-wide: 3,181 out of 52,519
    • In cancer biology: 78 out of 1,676
  • Year to date:
    • Site-wide: 30,923 out of 52,519
  • Since beginning of last month:
    • Site-wide: 34,642 out of 52,519

HOMINID: A framework for identifying associations between host genetic variation and microbiome composition

genomics more details view paper
  • Downloaded 1,334 times
  • Download rankings, all-time:
    • Site-wide: 3,619 out of 52,519
    • In genomics: 687 out of 3,756
  • Year to date:
    • Site-wide: 39,312 out of 52,519
  • Since beginning of last month:
    • Site-wide: 35,656 out of 52,519

Ecological and evolutionary adaptations shape the gut microbiome of BaAka African rainforest hunter-gatherers

microbiology more details view paper
  • Downloaded 1,197 times
  • Download rankings, all-time:
    • Site-wide: 4,292 out of 52,519
    • In microbiology: 136 out of 4,108
  • Year to date:
    • Site-wide: 41,614 out of 52,519
  • Since beginning of last month:
    • Site-wide: 36,045 out of 52,519

Gut Microbiota Diversity across Ethnicities in the United States

microbiology more details view paper
  • Downloaded 1,130 times
  • Download rankings, all-time:
    • Site-wide: 4,714 out of 52,519
    • In microbiology: 160 out of 4,108
  • Year to date:
    • Site-wide: 5,926 out of 52,519
  • Since beginning of last month:
    • Site-wide: 15,138 out of 52,519

Megaphage infect Prevotella and variants are widespread in gut microbiomes

microbiology more details view paper
  • Downloaded 1,071 times
  • Download rankings, all-time:
    • Site-wide: 5,132 out of 52,519
    • In microbiology: 185 out of 4,108
  • Year to date:
    • Site-wide: 7,451 out of 52,519
  • Since beginning of last month:
    • Site-wide: 18,437 out of 52,519

Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment

genomics more details view paper
  • Downloaded 817 times
  • Download rankings, all-time:
    • Site-wide: 7,880 out of 52,519
    • In genomics: 1,228 out of 3,756
  • Year to date:
    • Site-wide: 42,629 out of 52,519
  • Since beginning of last month:
    • Site-wide: 46,015 out of 52,519

Interaction Between Host MicroRNAs and the Gut Microbiota in Colorectal Cancer

systems biology more details view paper
  • Downloaded 784 times
  • Download rankings, all-time:
    • Site-wide: 8,413 out of 52,519
    • In systems biology: 237 out of 1,534
  • Year to date:
    • Site-wide: 32,308 out of 52,519
  • Since beginning of last month:
    • Site-wide: 42,851 out of 52,519

Genetic and transcriptional analysis of human host response to healthy gut microbiome

genomics more details view paper
  • Downloaded 586 times
  • Download rankings, all-time:
    • Site-wide: 12,562 out of 52,519
    • In genomics: 1,708 out of 3,756
  • Year to date:
    • Site-wide: 47,321 out of 52,519
  • Since beginning of last month:
    • Site-wide: 35,536 out of 52,519

Distinct Microbes, Metabolites, and Ecologies Define the Microbiome in Deficient and Proficient Mismatch Repair Colorectal Cancers

cancer biology more details view paper
  • Downloaded 422 times
  • Download rankings, all-time:
    • Site-wide: 18,825 out of 52,519
    • In cancer biology: 544 out of 1,676
  • Year to date:
    • Site-wide: 25,576 out of 52,519
  • Since beginning of last month:
    • Site-wide: 37,567 out of 52,519

Interactions between the gut microbiome and host gene regulation in cystic fibrosis

genomics more details view paper
  • Downloaded 225 times
  • Download rankings, all-time:
    • Site-wide: 32,796 out of 52,519
    • In genomics: 3,014 out of 3,756
  • Year to date:
    • Site-wide: 8,039 out of 52,519
  • Since beginning of last month:
    • Site-wide: 8,741 out of 52,519

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