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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 63,081 bioRxiv papers from 279,818 authors.

Author: Aaron E Darling

Rankings

  • All-time downloads: 19,633 (rank: 1,278 out of 279,818)
  • Categories:
    • bioinformatics: 13,502 (rank: 157 out of 24,463)
    • evolutionary biology: 580 (rank: 6,045 (tie) out of 15,332)
    • genomics: 1,973 (rank: 6,900 (tie) out of 32,029)
    • microbiology: 350 (rank: 12,161 (tie) out of 28,673)
    • molecular biology: 3,228 (rank: 268 (tie) out of 12,787)

Downloads per author, site-wide

Preprints

Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

bioinformatics more details view paper
  • Downloaded 6,502 times
  • Download rankings, all-time:
    • Site-wide: 255 out of 63,081
    • In bioinformatics: 43 out of 6,269
  • Year to date:
    • Site-wide: 6,477 out of 63,081
  • Since beginning of last month:
    • Site-wide: 11,257 out of 63,081

Resolving microbial microdiversity with high accuracy full length 16S rRNA Illumina sequencing

molecular biology more details view paper
  • Downloaded 3,228 times
  • Download rankings, all-time:
    • Site-wide: 941 out of 63,081
    • In molecular biology: 21 out of 1,980
  • Year to date:
    • Site-wide: 26,396 out of 63,081
  • Since beginning of last month:
    • Site-wide: 26,677 out of 63,081

Alignathon: A competitive assessment of whole genome alignment methods.

bioinformatics more details view paper
  • Downloaded 3,096 times
  • Download rankings, all-time:
    • Site-wide: 1,017 out of 63,081
    • In bioinformatics: 207 out of 6,269
  • Year to date:
    • Site-wide: 21,895 out of 63,081
  • Since beginning of last month:
    • Site-wide: 25,892 out of 63,081

CAMISIM: Simulating metagenomes and microbial communities

bioinformatics more details view paper
  • Downloaded 1,323 times
  • Download rankings, all-time:
    • Site-wide: 4,491 out of 63,081
    • In bioinformatics: 886 out of 6,269
  • Year to date:
    • Site-wide: 3,458 out of 63,081
  • Since beginning of last month:
    • Site-wide: 14,307 out of 63,081

Hackflex: low cost Illumina sequencing library construction for high sample counts

genomics more details view paper
  • Downloaded 1,247 times
  • Download rankings, all-time:
    • Site-wide: 4,929 out of 63,081
    • In genomics: 857 out of 4,328
  • Year to date:
    • Site-wide: 1,001 out of 63,081
  • Since beginning of last month:
    • Site-wide: 33 out of 63,081

bin3C : Exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes (MAGs)

bioinformatics more details view paper
  • Downloaded 685 times
  • Download rankings, all-time:
    • Site-wide: 12,619 out of 63,081
    • In bioinformatics: 2,075 out of 6,269
  • Year to date:
    • Site-wide: 13,470 out of 63,081
  • Since beginning of last month:
    • Site-wide: 47,174 out of 63,081

Effective Online Bayesian Phylogenetics Via Sequential Monte Carlo With Guided Proposals

bioinformatics more details view paper
  • Downloaded 684 times
  • Download rankings, all-time:
    • Site-wide: 12,647 out of 63,081
    • In bioinformatics: 2,078 out of 6,269
  • Year to date:
    • Site-wide: 38,524 out of 63,081
  • Since beginning of last month:
    • Site-wide: 42,755 out of 63,081

Sim3C: Simulation Of HiC And Meta3C Proximity Ligation Sequencing Technologies

bioinformatics more details view paper
  • Downloaded 564 times
  • Download rankings, all-time:
    • Site-wide: 16,484 out of 63,081
    • In bioinformatics: 2,548 out of 6,269
  • Year to date:
    • Site-wide: 50,910 out of 63,081
  • Since beginning of last month:
    • Site-wide: 44,981 out of 63,081

The Impact of Migratory Flyways on the Spread of Avian Influenza Virus in North America

evolutionary biology more details view paper
  • Downloaded 458 times
  • Download rankings, all-time:
    • Site-wide: 21,411 out of 63,081
    • In evolutionary biology: 1,598 out of 4,240
  • Year to date:
    • Site-wide: 40,132 out of 63,081
  • Since beginning of last month:
    • Site-wide: 43,858 out of 63,081

Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics

bioinformatics more details view paper
  • Downloaded 420 times
  • Download rankings, all-time:
    • Site-wide: 23,599 out of 63,081
    • In bioinformatics: 3,331 out of 6,269
  • Year to date:
    • Site-wide: 6,578 out of 63,081
  • Since beginning of last month:
    • Site-wide: 7,340 out of 63,081

Porcine commensal Escherichia coli: A reservoir for class 1 integrons associated with IS26

genomics more details view paper
  • Downloaded 406 times
  • Download rankings, all-time:
    • Site-wide: 24,507 out of 63,081
    • In genomics: 2,622 out of 4,328
  • Year to date:
    • Site-wide: 48,050 out of 63,081
  • Since beginning of last month:
    • Site-wide: 52,871 out of 63,081

A new massively-parallel transposon mutagenesis approach comparing multiple datasets identifies novel mechanisms of action and resistance to triclosan

microbiology more details view paper
  • Downloaded 350 times
  • Download rankings, all-time:
    • Site-wide: 28,545 out of 63,081
    • In microbiology: 1,708 out of 5,044
  • Year to date:
    • Site-wide: 8,937 out of 63,081
  • Since beginning of last month:
    • Site-wide: 14,956 out of 63,081

Evaluation of ddRADseq for reduced representation metagenome sequencing

genomics more details view paper
  • Downloaded 320 times
  • Download rankings, all-time:
    • Site-wide: 31,163 out of 63,081
    • In genomics: 3,039 out of 4,328
  • Year to date:
    • Site-wide: 59,519 out of 63,081
  • Since beginning of last month:
    • Site-wide: 55,535 out of 63,081

Genomes from Bacteria Associated with the Canine Oral Cavity: a Test Case for Automated Genome-Based Taxonomic Assignment

bioinformatics more details view paper
  • Downloaded 228 times
  • Download rankings, all-time:
    • Site-wide: 40,765 out of 63,081
    • In bioinformatics: 4,794 out of 6,269
  • Year to date:
    • Site-wide: 16,987 out of 63,081
  • Since beginning of last month:
    • Site-wide: 35,706 out of 63,081

Trial by phylogenetics - Evaluating the Multi-Species Coalescent for evolutionary inference on taxa with high levels of paralogy (Gonyaulacales, Dinophyceae).

evolutionary biology more details view paper
  • Downloaded 122 times
  • Download rankings, all-time:
    • Site-wide: 54,519 out of 63,081
    • In evolutionary biology: 3,828 out of 4,240
  • Year to date:
    • Site-wide: 34,418 out of 63,081
  • Since beginning of last month:
    • Site-wide: 43,389 out of 63,081

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