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Author: Heng Li

Rankings

  • All-time downloads: 118,785 (rank: 880 )
  • Categories:
    • biochemistry: 1,028 (rank: 5,396 (tie) )
    • bioinformatics: 37,956 (rank: 78 )
    • evolutionary biology: 648 (rank: 11,604 (tie) )
    • genetics: 19,705 (rank: 614 (tie) )
    • genomics: 56,722 (rank: 156 )
    • immunology: 1,982 (rank: 5,711 (tie) )
    • plant biology: 744 (rank: 6,225 (tie) )

Downloads per author, site-wide

Preprints

CoLoRd: Compressing long reads

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The complete sequence of a human genome

genomics more details view paper
  • Downloaded 33,007 times
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    • Site-wide: 221
    • In genomics: 10
  • Year to date:
    • Site-wide: 42
  • Since beginning of last month:
    • Site-wide: 9

Ancient human genomes suggest three ancestral populations for present-day Europeans

genetics more details view paper
  • Downloaded 19,705 times
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    • Site-wide: 392
    • In genetics: 8
  • Year to date:
    • Site-wide: 7,747
  • Since beginning of last month:
    • Site-wide: 6,733

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 13,235 times
  • Download rankings, all-time:
    • Site-wide: 637
    • In genomics: 40
  • Year to date:
    • Site-wide: 5,457
  • Since beginning of last month:
    • Site-wide: 8,845

Genome Graphs

bioinformatics more details view paper
  • Downloaded 9,337 times
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    • Site-wide: 1,008
    • In bioinformatics: 51
  • Year to date:
    • Site-wide: 9,778
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    • Site-wide: 14,424

Fast and accurate long-read assembly with wtdbg2

bioinformatics more details view paper
  • Downloaded 8,362 times
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    • Site-wide: 1,171
    • In bioinformatics: 69
  • Year to date:
    • Site-wide: 16,130
  • Since beginning of last month:
    • Site-wide: 14,419

Genes Affecting Vocal and Facial Anatomy Went Through Extensive Regulatory Divergence in Modern Humans

genomics more details view paper
  • Downloaded 6,119 times
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    • Site-wide: 1,757
    • In genomics: 151
  • Year to date:
    • Site-wide: 20,725
  • Since beginning of last month:
    • Site-wide: 32,247

Accurate chromosome-scale haplotype-resolved assembly of human genomes

bioinformatics more details view paper
  • Downloaded 4,171 times
  • Download rankings, all-time:
    • Site-wide: 2,991
    • In bioinformatics: 254
  • Year to date:
    • Site-wide: 6,239
  • Since beginning of last month:
    • Site-wide: 11,596

SAM/BAM format v1.5 extensions for de novo assemblies

bioinformatics more details view paper
  • Downloaded 4,067 times
  • Download rankings, all-time:
    • Site-wide: 3,094
    • In bioinformatics: 268
  • Year to date:
    • Site-wide: 35,352
  • Since beginning of last month:
    • Site-wide: 43,422

New synthetic-diploid benchmark for accurate variant calling evaluation

bioinformatics more details view paper
  • Downloaded 3,177 times
  • Download rankings, all-time:
    • Site-wide: 4,400
    • In bioinformatics: 429
  • Year to date:
    • Site-wide: 76,036
  • Since beginning of last month:
    • Site-wide: 85,597

Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects

bioinformatics more details view paper
  • Downloaded 2,437 times
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    • Site-wide: 6,445
    • In bioinformatics: 700
  • Year to date:
    • Site-wide: 75,645
  • Since beginning of last month:
    • Site-wide: 73,462

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,625 times
  • Download rankings, all-time:
    • Site-wide: 11,714
    • In genomics: 1,213
  • Year to date:
    • Site-wide: 41,228
  • Since beginning of last month:
    • Site-wide: 61,121

Fast alignment and preprocessing of chromatin profiles with Chromap

bioinformatics more details view paper
  • Downloaded 1,445 times
  • Download rankings, all-time:
    • Site-wide: 13,911
    • In bioinformatics: 1,613
  • Year to date:
    • Site-wide: 1,720
  • Since beginning of last month:
    • Site-wide: 286

A haplotype-aware de novo assembly of related individuals using pedigree graph

bioinformatics more details view paper
  • Downloaded 1,366 times
  • Download rankings, all-time:
    • Site-wide: 15,141
    • In bioinformatics: 1,773
  • Year to date:
    • Site-wide: 99,840
  • Since beginning of last month:
    • Site-wide: 92,509

Towards a Comprehensive Variation Benchmark for Challenging Medically-Relevant Autosomal Genes

genomics more details view paper
  • Downloaded 1,254 times
  • Download rankings, all-time:
    • Site-wide: 17,201
    • In genomics: 1,700
  • Year to date:
    • Site-wide: 2,108
  • Since beginning of last month:
    • Site-wide: 337

An Antioxidant Enzyme Therapeutic for COVID-19

biochemistry more details view paper
  • Downloaded 1,028 times
  • Download rankings, all-time:
    • Site-wide: 23,087
    • In biochemistry: 499
  • Year to date:
    • Site-wide: 20,360
  • Since beginning of last month:
    • Site-wide: 24,201

CIS checkpoint deletion enhances the fitness of cord blood derived natural killer cells transduced with a chimeric antigen receptor

immunology more details view paper
  • Downloaded 1,019 times
  • Download rankings, all-time:
    • Site-wide: 23,384
    • In immunology: 754
  • Year to date:
    • Site-wide: 20,850
  • Since beginning of last month:
    • Site-wide: 19,177

SDip: A novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing

bioinformatics more details view paper
  • Downloaded 962 times
  • Download rankings, all-time:
    • Site-wide: 25,465
    • In bioinformatics: 2,907
  • Year to date:
    • Site-wide: 25,529
  • Since beginning of last month:
    • Site-wide: 35,306

Worldwide genetic variation of the IGHV and TRBV immune receptor gene families in humans

genomics more details view paper
  • Downloaded 853 times
  • Download rankings, all-time:
    • Site-wide: 30,138
    • In genomics: 2,671
  • Year to date:
    • Site-wide: 116,805
  • Since beginning of last month:
    • Site-wide: 114,698

A valid protective immune response elicited in rhesus macaques by an inactivated vaccine is capable of defending against SARS-CoV-2 infection

immunology more details view paper
  • Downloaded 834 times
  • Download rankings, all-time:
    • Site-wide: 31,096
    • In immunology: 967
  • Year to date:
    • Site-wide: 36,818
  • Since beginning of last month:
    • Site-wide: 38,606

HTSlib - C library for reading/writing high-throughput sequencing data

bioinformatics more details view paper
  • Downloaded 811 times
  • Download rankings, all-time:
    • Site-wide: 32,346
    • In bioinformatics: 3,590
  • Year to date:
    • Site-wide: 14,382
  • Since beginning of last month:
    • Site-wide: 28,945

An enormous Paris polyphylla genome sheds light on genome size evolution and polyphyllin biogenesis

plant biology more details view paper
  • Downloaded 744 times
  • Download rankings, all-time:
    • Site-wide: 36,460
    • In plant biology: 718
  • Year to date:
    • Site-wide: 33,893
  • Since beginning of last month:
    • Site-wide: 35,612

Bedtk: Finding Interval Overlap with Implicit Interval Tree

bioinformatics more details view paper
  • Downloaded 736 times
  • Download rankings, all-time:
    • Site-wide: 37,035
    • In bioinformatics: 4,027
  • Year to date:
    • Site-wide: 45,506
  • Since beginning of last month:
    • Site-wide: 52,665

No evidence that natural selection has been less effective at removing deleterious mutations in Europeans than in West Africans

evolutionary biology more details view paper
  • Downloaded 648 times
  • Download rankings, all-time:
    • Site-wide: 43,806
    • In evolutionary biology: 2,142
  • Year to date:
    • Site-wide: 120,780
  • Since beginning of last month:
    • Site-wide: 122,595

Exploratory analysis and error modeling of a sequencing technology

genomics more details view paper
  • Downloaded 629 times
  • Download rankings, all-time:
    • Site-wide: 45,524
    • In genomics: 3,613
  • Year to date:
    • Site-wide: 124,144
  • Since beginning of last month:
    • Site-wide: 124,163

CRISPAltRations: a validated cloud-based approach for interrogation of double-strand break repair mediated by CRISPR genome editing

bioinformatics more details view paper
  • Downloaded 451 times
  • Download rankings, all-time:
    • Site-wide: 67,261
    • In bioinformatics: 6,462
  • Year to date:
    • Site-wide: 33,473
  • Since beginning of last month:
    • Site-wide: 55,679

LISA: Learned Indexes for Sequence Analysis

bioinformatics more details view paper
  • Downloaded 386 times
  • Download rankings, all-time:
    • Site-wide: 78,290
    • In bioinformatics: 7,203
  • Year to date:
    • Site-wide: 38,289
  • Since beginning of last month:
    • Site-wide: None

Higher rates of processed pseudogene acquisition in humans and three great apes revealed by long read assemblies

bioinformatics more details view paper
  • Downloaded 248 times
  • Download rankings, all-time:
    • Site-wide: 108,426
    • In bioinformatics: 9,114
  • Year to date:
    • Site-wide: 76,252
  • Since beginning of last month:
    • Site-wide: 83,102

Integrative Transcriptomic Analysis Reveals the Immune Mechanism for A CyHV-3-Resistant Common Carp Strain

immunology more details view paper
  • Downloaded 129 times
  • Download rankings, all-time:
    • Site-wide: 136,455
    • In immunology: 4,039
  • Year to date:
    • Site-wide: 76,843
  • Since beginning of last month:
    • Site-wide: 118,826

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