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Author: Heng Li

  • ORCiD: http://orcid.org/0000-0003-4874-2874
  • Most recently observed institution: Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA; Department of Biomedical Informatics, Harvard Medical School, Boston,MA, USA; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA

Rankings

  • All-time downloads: 128,713 (rank: 933 )
  • Categories:
    • biochemistry: 1,120 (rank: 5,525 (tie) )
    • bioinformatics: 40,161 (rank: 77 )
    • evolutionary biology: 665 (rank: 12,154 (tie) )
    • genetics: 19,866 (rank: 625 (tie) )
    • genomics: 63,939 (rank: 146 )
    • immunology: 2,153 (rank: 5,959 (tie) )
    • plant biology: 809 (rank: 6,258 (tie) )

Downloads per author, site-wide

Preprints

The complete sequence of a human genome

genomics more details view paper
  • Downloaded 39,143 times
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    • Site-wide: 199
    • In genomics: 7
  • Year to date:
    • Site-wide: 58
  • Since beginning of last month:
    • Site-wide: 108

Ancient human genomes suggest three ancestral populations for present-day Europeans

genetics more details view paper
  • Downloaded 19,866 times
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    • Site-wide: 440
    • In genetics: 8
  • Year to date:
    • Site-wide: 7,958
  • Since beginning of last month:
    • Site-wide: 11,727

Highly-accurate long-read sequencing improves variant detection and assembly of a human genome

genomics more details view paper
  • Downloaded 13,466 times
  • Download rankings, all-time:
    • Site-wide: 705
    • In genomics: 41
  • Year to date:
    • Site-wide: 5,341
  • Since beginning of last month:
    • Site-wide: 9,408

Genome Graphs

bioinformatics more details view paper
  • Downloaded 9,507 times
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    • Site-wide: 1,111
    • In bioinformatics: 52
  • Year to date:
    • Site-wide: 9,390
  • Since beginning of last month:
    • Site-wide: 15,779

Fast and accurate long-read assembly with wtdbg2

bioinformatics more details view paper
  • Downloaded 8,427 times
  • Download rankings, all-time:
    • Site-wide: 1,297
    • In bioinformatics: 71
  • Year to date:
    • Site-wide: 19,351
  • Since beginning of last month:
    • Site-wide: 43,127

Genes Affecting Vocal and Facial Anatomy Went Through Extensive Regulatory Divergence in Modern Humans

genomics more details view paper
  • Downloaded 6,223 times
  • Download rankings, all-time:
    • Site-wide: 1,908
    • In genomics: 156
  • Year to date:
    • Site-wide: 20,294
  • Since beginning of last month:
    • Site-wide: 26,728

Accurate chromosome-scale haplotype-resolved assembly of human genomes

bioinformatics more details view paper
  • Downloaded 4,351 times
  • Download rankings, all-time:
    • Site-wide: 3,107
    • In bioinformatics: 252
  • Year to date:
    • Site-wide: 6,519
  • Since beginning of last month:
    • Site-wide: 11,746

SAM/BAM format v1.5 extensions for de novo assemblies

bioinformatics more details view paper
  • Downloaded 4,136 times
  • Download rankings, all-time:
    • Site-wide: 3,329
    • In bioinformatics: 279
  • Year to date:
    • Site-wide: 36,082
  • Since beginning of last month:
    • Site-wide: 42,888

New synthetic-diploid benchmark for accurate variant calling evaluation

bioinformatics more details view paper
  • Downloaded 3,215 times
  • Download rankings, all-time:
    • Site-wide: 4,741
    • In bioinformatics: 448
  • Year to date:
    • Site-wide: 79,548
  • Since beginning of last month:
    • Site-wide: 112,095

Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects

bioinformatics more details view paper
  • Downloaded 2,476 times
  • Download rankings, all-time:
    • Site-wide: 6,929
    • In bioinformatics: 733
  • Year to date:
    • Site-wide: 77,872
  • Since beginning of last month:
    • Site-wide: 80,994

Towards a Comprehensive Variation Benchmark for Challenging Medically-Relevant Autosomal Genes

genomics more details view paper
  • Downloaded 1,912 times
  • Download rankings, all-time:
    • Site-wide: 10,081
    • In genomics: 1,008
  • Year to date:
    • Site-wide: 1,764
  • Since beginning of last month:
    • Site-wide: 1,091

Fast alignment and preprocessing of chromatin profiles with Chromap

bioinformatics more details view paper
  • Downloaded 1,719 times
  • Download rankings, all-time:
    • Site-wide: 11,807
    • In bioinformatics: 1,337
  • Year to date:
    • Site-wide: 2,035
  • Since beginning of last month:
    • Site-wide: 9,716

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,663 times
  • Download rankings, all-time:
    • Site-wide: 12,391
    • In genomics: 1,254
  • Year to date:
    • Site-wide: 49,200
  • Since beginning of last month:
    • Site-wide: 68,653

A haplotype-aware de novo assembly of related individuals using pedigree graph

bioinformatics more details view paper
  • Downloaded 1,390 times
  • Download rankings, all-time:
    • Site-wide: 16,264
    • In bioinformatics: 1,852
  • Year to date:
    • Site-wide: 107,780
  • Since beginning of last month:
    • Site-wide: 146,133

An Antioxidant Enzyme Therapeutic for COVID-19

biochemistry more details view paper
  • Downloaded 1,120 times
  • Download rankings, all-time:
    • Site-wide: 22,387
    • In biochemistry: 487
  • Year to date:
    • Site-wide: 21,049
  • Since beginning of last month:
    • Site-wide: 21,601

CIS checkpoint deletion enhances the fitness of cord blood derived natural killer cells transduced with a chimeric antigen receptor

immunology more details view paper
  • Downloaded 1,100 times
  • Download rankings, all-time:
    • Site-wide: 22,980
    • In immunology: 783
  • Year to date:
    • Site-wide: 22,572
  • Since beginning of last month:
    • Site-wide: 21,082

SDip: A novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing

bioinformatics more details view paper
  • Downloaded 1,027 times
  • Download rankings, all-time:
    • Site-wide: 25,500
    • In bioinformatics: 2,865
  • Year to date:
    • Site-wide: 28,424
  • Since beginning of last month:
    • Site-wide: 53,344

A valid protective immune response elicited in rhesus macaques by an inactivated vaccine is capable of defending against SARS-CoV-2 infection

immunology more details view paper
  • Downloaded 882 times
  • Download rankings, all-time:
    • Site-wide: 31,790
    • In immunology: 1,033
  • Year to date:
    • Site-wide: 42,043
  • Since beginning of last month:
    • Site-wide: 36,875

Worldwide genetic variation of the IGHV and TRBV immune receptor gene families in humans

genomics more details view paper
  • Downloaded 875 times
  • Download rankings, all-time:
    • Site-wide: 32,148
    • In genomics: 2,764
  • Year to date:
    • Site-wide: 123,515
  • Since beginning of last month:
    • Site-wide: 106,868

HTSlib - C library for reading/writing high-throughput sequencing data

bioinformatics more details view paper
  • Downloaded 874 times
  • Download rankings, all-time:
    • Site-wide: 32,206
    • In bioinformatics: 3,549
  • Year to date:
    • Site-wide: 17,766
  • Since beginning of last month:
    • Site-wide: 68,067

An enormous Paris polyphylla genome sheds light on genome size evolution and polyphyllin biogenesis

plant biology more details view paper
  • Downloaded 809 times
  • Download rankings, all-time:
    • Site-wide: 35,848
    • In plant biology: 677
  • Year to date:
    • Site-wide: 35,751
  • Since beginning of last month:
    • Site-wide: 35,253

CoLoRd: Compressing long reads

bioinformatics more details view paper
  • Downloaded 808 times
  • Download rankings, all-time:
    • Site-wide: 35,982
    • In bioinformatics: 3,899
  • Year to date:
    • Site-wide: 6,020
  • Since beginning of last month:
    • Site-wide: 25,116

Bedtk: Finding Interval Overlap with Implicit Interval Tree

bioinformatics more details view paper
  • Downloaded 801 times
  • Download rankings, all-time:
    • Site-wide: 36,405
    • In bioinformatics: 3,935
  • Year to date:
    • Site-wide: 44,797
  • Since beginning of last month:
    • Site-wide: 41,932

LISA: Learned Indexes for Sequence Analysis

bioinformatics more details view paper
  • Downloaded 667 times
  • Download rankings, all-time:
    • Site-wide: 46,833
    • In bioinformatics: 4,842
  • Year to date:
    • Site-wide: 15,248
  • Since beginning of last month:
    • Site-wide: 16,701

No evidence that natural selection has been less effective at removing deleterious mutations in Europeans than in West Africans

evolutionary biology more details view paper
  • Downloaded 665 times
  • Download rankings, all-time:
    • Site-wide: 46,990
    • In evolutionary biology: 2,242
  • Year to date:
    • Site-wide: 132,813
  • Since beginning of last month:
    • Site-wide: 103,234

Exploratory analysis and error modeling of a sequencing technology

genomics more details view paper
  • Downloaded 657 times
  • Download rankings, all-time:
    • Site-wide: 47,716
    • In genomics: 3,707
  • Year to date:
    • Site-wide: 123,117
  • Since beginning of last month:
    • Site-wide: 130,391

CRISPAltRations: a validated cloud-based approach for interrogation of double-strand break repair mediated by CRISPR genome editing

bioinformatics more details view paper
  • Downloaded 497 times
  • Download rankings, all-time:
    • Site-wide: 67,055
    • In bioinformatics: 6,433
  • Year to date:
    • Site-wide: 39,310
  • Since beginning of last month:
    • Site-wide: 71,286

Higher rates of processed pseudogene acquisition in humans and three great apes revealed by long read assemblies

bioinformatics more details view paper
  • Downloaded 266 times
  • Download rankings, all-time:
    • Site-wide: 115,449
    • In bioinformatics: 9,523
  • Year to date:
    • Site-wide: 93,216
  • Since beginning of last month:
    • Site-wide: 117,585

Integrative Transcriptomic Analysis Reveals the Immune Mechanism for A CyHV-3-Resistant Common Carp Strain

immunology more details view paper
  • Downloaded 171 times
  • Download rankings, all-time:
    • Site-wide: 139,635
    • In immunology: 4,186
  • Year to date:
    • Site-wide: 77,378
  • Since beginning of last month:
    • Site-wide: 41,623

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