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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,441 bioRxiv papers from 264,501 authors.

Author: Stephen R. Quake

Rankings

  • All-time downloads: 63,361 (rank: 177 out of 264,779)
  • Categories:
    • bioengineering: 1,070 (rank: 823 out of 6,130)
    • bioinformatics: 2,600 (rank: 2,441 (tie) out of 23,124)
    • cancer biology: 2,263 (rank: 664 out of 15,291)
    • cell biology: 26,910 (rank: 1 out of 16,783)
    • developmental biology: 159 (rank: 7,907 (tie) out of 9,402)
    • genetics: 1,470 (rank: 6,265 (tie) out of 25,216)
    • genomics: 10,124 (rank: 924 out of 30,243)
    • immunology: 6,215 (rank: 68 out of 11,212)
    • microbiology: 6,117 (rank: 75 out of 26,216)
    • neuroscience: 4,778 (rank: 1,037 out of 41,350)
    • systems biology: 1,655 (rank: 869 (tie) out of 7,794)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,609 times
  • Download rankings, all-time:
    • Site-wide: 73 out of 57,506
    • In cell biology: 2 out of 2,723
  • Year to date:
    • Site-wide: 4,857 out of 57,506
  • Since beginning of last month:
    • Site-wide: 5,869 out of 57,506

Single-cell transcriptomic characterization of 20 organs and tissues from individual mice creates a Tabula Muris

cell biology more details view paper
  • Downloaded 11,452 times
  • Download rankings, all-time:
    • Site-wide: 74 out of 57,506
    • In cell biology: 3 out of 2,723
  • Year to date:
    • Site-wide: 584 out of 57,506
  • Since beginning of last month:
    • Site-wide: 1,671 out of 57,506

Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-cell RNA Sequencing

genomics more details view paper
  • Downloaded 2,540 times
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    • Site-wide: 1,334 out of 57,506
    • In genomics: 318 out of 4,027
  • Year to date:
    • Site-wide: 15,899 out of 57,506
  • Since beginning of last month:
    • Site-wide: 12,219 out of 57,506

A Single Cell Transcriptomic Atlas Characterizes Aging Tissues in the Mouse

cell biology more details view paper
  • Downloaded 2,376 times
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    • Site-wide: 1,515 out of 57,506
    • In cell biology: 40 out of 2,723
  • Year to date:
    • Site-wide: 191 out of 57,506
  • Since beginning of last month:
    • Site-wide: 167 out of 57,506

Developmental heterogeneity of microglia and brain myeloid cells revealed by deep single-cell RNA sequencing

neuroscience more details view paper
  • Downloaded 2,083 times
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    • Site-wide: 1,900 out of 57,506
    • In neuroscience: 271 out of 10,103
  • Year to date:
    • Site-wide: 1,354 out of 57,506
  • Since beginning of last month:
    • Site-wide: None out of 57,506

The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude

genomics more details view paper
  • Downloaded 1,685 times
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    • Site-wide: 2,755 out of 57,506
    • In genomics: 555 out of 4,027
  • Year to date:
    • Site-wide: 387 out of 57,506
  • Since beginning of last month:
    • Site-wide: 408 out of 57,506

Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns.

genomics more details view paper
  • Downloaded 1,675 times
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    • Site-wide: 2,776 out of 57,506
    • In genomics: 561 out of 4,027
  • Year to date:
    • Site-wide: 22,873 out of 57,506
  • Since beginning of last month:
    • Site-wide: 44,716 out of 57,506

Single-cell RNA-seq reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress

systems biology more details view paper
  • Downloaded 1,655 times
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    • Site-wide: 2,834 out of 57,506
    • In systems biology: 72 out of 1,638
  • Year to date:
    • Site-wide: 33,963 out of 57,506
  • Since beginning of last month:
    • Site-wide: 36,773 out of 57,506

Single-cell analysis identifies EpCAM+/CDH6+/TROP-2- cells as human liver progenitors.

cell biology more details view paper
  • Downloaded 1,473 times
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    • Site-wide: 3,409 out of 57,506
    • In cell biology: 91 out of 2,723
  • Year to date:
    • Site-wide: 2,795 out of 57,506
  • Since beginning of last month:
    • Site-wide: 4,329 out of 57,506

Nonivasive prenatal diagnosis of single-gene disorders using droplet digital PCR

genetics more details view paper
  • Downloaded 1,470 times
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    • Site-wide: 3,425 out of 57,506
    • In genetics: 305 out of 3,295
  • Year to date:
    • Site-wide: 6,453 out of 57,506
  • Since beginning of last month:
    • Site-wide: 11,185 out of 57,506

Humans are colonized by many uncharacterized and highly divergent microbes

microbiology more details view paper
  • Downloaded 1,455 times
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    • Site-wide: 3,497 out of 57,506
    • In microbiology: 100 out of 4,580
  • Year to date:
    • Site-wide: 39,312 out of 57,506
  • Since beginning of last month:
    • Site-wide: 26,021 out of 57,506

Self-assembling Manifolds in Single-cell RNA Sequencing Data

bioinformatics more details view paper
  • Downloaded 1,423 times
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    • Site-wide: 3,637 out of 57,506
    • In bioinformatics: 731 out of 5,863
  • Year to date:
    • Site-wide: 2,841 out of 57,506
  • Since beginning of last month:
    • Site-wide: 3,450 out of 57,506

Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples

microbiology more details view paper
  • Downloaded 1,367 times
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    • Site-wide: 3,894 out of 57,506
    • In microbiology: 115 out of 4,580
  • Year to date:
    • Site-wide: 36,526 out of 57,506
  • Since beginning of last month:
    • Site-wide: 40,840 out of 57,506

Detection of early stage pancreatic cancer using 5-hydroxymethylcytosine signatures in circulating cell free DNA

cancer biology more details view paper
  • Downloaded 1,363 times
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    • Site-wide: 3,910 out of 57,506
    • In cancer biology: 98 out of 1,856
  • Year to date:
    • Site-wide: 4,540 out of 57,506
  • Since beginning of last month:
    • Site-wide: 7,959 out of 57,506

Pancreas patch-seq links physiologic dysfunction in diabetes to single-cell transcriptomic phenotypes

genomics more details view paper
  • Downloaded 1,299 times
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    • Site-wide: 4,226 out of 57,506
    • In genomics: 768 out of 4,027
  • Year to date:
    • Site-wide: 629 out of 57,506
  • Since beginning of last month:
    • Site-wide: 1,567 out of 57,506

Human IgE producing B cells have a unique transcriptional program and generate high affinity, allergen-specific antibodies

immunology more details view paper
  • Downloaded 1,290 times
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    • Site-wide: 4,282 out of 57,506
    • In immunology: 47 out of 1,372
  • Year to date:
    • Site-wide: 3,480 out of 57,506
  • Since beginning of last month:
    • Site-wide: 5,782 out of 57,506

Serotonin Neurons in the Dorsal and Medial Raphe Nuclei: from Single-Cell Transcriptomes to Whole-Brain Projections

neuroscience more details view paper
  • Downloaded 1,276 times
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    • Site-wide: 4,340 out of 57,506
    • In neuroscience: 673 out of 10,103
  • Year to date:
    • Site-wide: 653 out of 57,506
  • Since beginning of last month:
    • Site-wide: 389 out of 57,506

Single cell RNAseq provides a molecular and cellular cartography of changes to the human endometrium through the menstrual cycle

genomics more details view paper
  • Downloaded 1,222 times
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    • Site-wide: 4,642 out of 57,506
    • In genomics: 825 out of 4,027
  • Year to date:
    • Site-wide: 2,694 out of 57,506
  • Since beginning of last month:
    • Site-wide: 3,926 out of 57,506

Single-cell transcriptional dynamics of flavivirus infection

microbiology more details view paper
  • Downloaded 1,191 times
  • Download rankings, all-time:
    • Site-wide: 4,833 out of 57,506
    • In microbiology: 166 out of 4,580
  • Year to date:
    • Site-wide: 25,294 out of 57,506
  • Since beginning of last month:
    • Site-wide: 18,808 out of 57,506

Neutral and niche dynamics in a synthetic microbial community

microbiology more details view paper
  • Downloaded 1,190 times
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    • Site-wide: 4,835 out of 57,506
    • In microbiology: 167 out of 4,580
  • Year to date:
    • Site-wide: 43,262 out of 57,506
  • Since beginning of last month:
    • Site-wide: 36,668 out of 57,506

Aging-related inflammation driven by cellular senescence enhances NAD consumption via activation of CD38+ macrophages

immunology more details view paper
  • Downloaded 1,072 times
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    • Site-wide: 5,776 out of 57,506
    • In immunology: 67 out of 1,372
  • Year to date:
    • Site-wide: 929 out of 57,506
  • Since beginning of last month:
    • Site-wide: 530 out of 57,506

Signatures of Selection in the Human Antibody Repertoire: Selective Sweeps, Competing Subclones, and Neutral Drift

immunology more details view paper
  • Downloaded 938 times
  • Download rankings, all-time:
    • Site-wide: 7,175 out of 57,506
    • In immunology: 95 out of 1,372
  • Year to date:
    • Site-wide: 47,488 out of 57,506
  • Since beginning of last month:
    • Site-wide: 54,491 out of 57,506

5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages

genomics more details view paper
  • Downloaded 919 times
  • Download rankings, all-time:
    • Site-wide: 7,408 out of 57,506
    • In genomics: 1,172 out of 4,027
  • Year to date:
    • Site-wide: 35,116 out of 57,506
  • Since beginning of last month:
    • Site-wide: 25,604 out of 57,506

Single-Cell RNAseq analysis of infiltrating neoplastic cells at the migrating front of human glioblastoma

cancer biology more details view paper
  • Downloaded 900 times
  • Download rankings, all-time:
    • Site-wide: 7,650 out of 57,506
    • In cancer biology: 201 out of 1,856
  • Year to date:
    • Site-wide: 38,880 out of 57,506
  • Since beginning of last month:
    • Site-wide: 28,655 out of 57,506

c-Jun Overexpressing CAR-T Cells are Exhaustion-Resistant and Mediate Enhanced Antitumor Activity

immunology more details view paper
  • Downloaded 847 times
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    • Site-wide: 8,394 out of 57,506
    • In immunology: 121 out of 1,372
  • Year to date:
    • Site-wide: 1,421 out of 57,506
  • Since beginning of last month:
    • Site-wide: 490 out of 57,506

PhaMers identifies novel bacteriophage sequences from thermophilic hot springs

bioinformatics more details view paper
  • Downloaded 812 times
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    • Site-wide: 8,983 out of 57,506
    • In bioinformatics: 1,591 out of 5,863
  • Year to date:
    • Site-wide: 19,996 out of 57,506
  • Since beginning of last month:
    • Site-wide: 13,091 out of 57,506

Dynamics Of The Human Antibody Repertoire Following B-cell Depletion In Systemic Sclerosis

immunology more details view paper
  • Downloaded 794 times
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    • Site-wide: 9,304 out of 57,506
    • In immunology: 135 out of 1,372
  • Year to date:
    • Site-wide: 38,867 out of 57,506
  • Since beginning of last month:
    • Site-wide: 47,064 out of 57,506

Brain endothelial cells are exquisite sensors of age-related circulatory cues

neuroscience more details view paper
  • Downloaded 728 times
  • Download rankings, all-time:
    • Site-wide: 10,517 out of 57,506
    • In neuroscience: 1,651 out of 10,103
  • Year to date:
    • Site-wide: 1,849 out of 57,506
  • Since beginning of last month:
    • Site-wide: 1,996 out of 57,506

Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens

microbiology more details view paper
  • Downloaded 720 times
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    • Site-wide: 10,673 out of 57,506
    • In microbiology: 481 out of 4,580
  • Year to date:
    • Site-wide: 14,410 out of 57,506
  • Since beginning of last month:
    • Site-wide: 18,369 out of 57,506

Discrete and Continuous Cell Identities of the Adult Murine Striatum

neuroscience more details view paper
  • Downloaded 691 times
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    • Site-wide: 11,330 out of 57,506
    • In neuroscience: 1,801 out of 10,103
  • Year to date:
    • Site-wide: 2,032 out of 57,506
  • Since beginning of last month:
    • Site-wide: 832 out of 57,506

A Noninvasive Molecular Clock for Fetal Development Predicts Gestational Age and Preterm Delivery

bioengineering more details view paper
  • Downloaded 657 times
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    • Site-wide: 12,200 out of 57,506
    • In bioengineering: 196 out of 1,103
  • Year to date:
    • Site-wide: 31,400 out of 57,506
  • Since beginning of last month:
    • Site-wide: 17,686 out of 57,506

Evolutionary Origin of the Mammalian Hematopoietic System Found in a Colonial Chordate

immunology more details view paper
  • Downloaded 639 times
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    • Site-wide: 12,627 out of 57,506
    • In immunology: 193 out of 1,372
  • Year to date:
    • Site-wide: 12,841 out of 57,506
  • Since beginning of last month:
    • Site-wide: 23,631 out of 57,506

Nucleic Acid Cleavage with a Hyperthermophilic Cas9 from an Unculturable Ignavibacterium

genomics more details view paper
  • Downloaded 461 times
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    • Site-wide: 19,261 out of 57,506
    • In genomics: 2,254 out of 4,027
  • Year to date:
    • Site-wide: 4,085 out of 57,506
  • Since beginning of last month:
    • Site-wide: 7,558 out of 57,506

A single-parasite transcriptional landscape of asexual development in Toxoplasma gondii

bioengineering more details view paper
  • Downloaded 413 times
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    • Site-wide: 21,769 out of 57,506
    • In bioengineering: 368 out of 1,103
  • Year to date:
    • Site-wide: 4,870 out of 57,506
  • Since beginning of last month:
    • Site-wide: 7,408 out of 57,506

Modeling Spatial Correlation of Transcripts With Application to Developing Pancreas

bioinformatics more details view paper
  • Downloaded 365 times
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    • Site-wide: 24,775 out of 57,506
    • In bioinformatics: 3,436 out of 5,863
  • Year to date:
    • Site-wide: 25,503 out of 57,506
  • Since beginning of last month:
    • Site-wide: 50,169 out of 57,506

Viral Taxonomy Derived From Evolutionary Genome Relationships

genomics more details view paper
  • Downloaded 323 times
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    • Site-wide: 27,916 out of 57,506
    • In genomics: 2,809 out of 4,027
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    • Site-wide: 23,948 out of 57,506
  • Since beginning of last month:
    • Site-wide: 31,512 out of 57,506

Transcriptional program of memory B cell activation, broadly binding anti-influenza antibodies, and bystander activation after vaccination revealed by single-cell transcriptomics

immunology more details view paper
  • Downloaded 322 times
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    • Site-wide: 28,004 out of 57,506
    • In immunology: 527 out of 1,372
  • Year to date:
    • Site-wide: 7,300 out of 57,506
  • Since beginning of last month:
    • Site-wide: 502 out of 57,506

Matrix-corrected mass spectrometry enables sensitive detection of food allergens and reveals widespread soy contamination of processed foods

immunology more details view paper
  • Downloaded 313 times
  • Download rankings, all-time:
    • Site-wide: 28,726 out of 57,506
    • In immunology: 539 out of 1,372
  • Year to date:
    • Site-wide: 41,943 out of 57,506
  • Since beginning of last month:
    • Site-wide: 37,476 out of 57,506

Cell-free DNA Reveals Potential Zoonotic Reservoirs in Non-Human Primates

microbiology more details view paper
  • Downloaded 194 times
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    • Site-wide: 40,727 out of 57,506
    • In microbiology: 2,761 out of 4,580
  • Year to date:
    • Site-wide: 28,602 out of 57,506
  • Since beginning of last month:
    • Site-wide: 34,322 out of 57,506

Molecular and genetic regulation of pig pancreatic islet cell development

developmental biology more details view paper
  • Downloaded 159 times
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    • Site-wide: 44,962 out of 57,506
    • In developmental biology: 1,386 out of 1,702
  • Year to date:
    • Site-wide: 19,848 out of 57,506
  • Since beginning of last month:
    • Site-wide: 1,703 out of 57,506

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