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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 63,068 bioRxiv papers from 279,747 authors.

Author: Stephen R. Quake

Rankings

  • All-time downloads: 62,108 (rank: 193 out of 279,747)
  • Categories:
    • bioengineering: 1,145 (rank: 836 (tie) out of 6,965)
    • bioinformatics: 2,828 (rank: 2,353 (tie) out of 24,466)
    • biophysics: 124 (rank: 9,951 (tie) out of 10,946)
    • cancer biology: 2,405 (rank: 711 out of 17,313)
    • cell biology: 16,550 (rank: 5 (tie) out of 18,544)
    • developmental biology: 303 (rank: 5,869 (tie) out of 10,355)
    • genetics: 1,519 (rank: 7,348 (tie) out of 27,857)
    • genomics: 14,989 (rank: 443 out of 32,025)
    • immunology: 8,177 (rank: 51 out of 12,631)
    • microbiology: 5,114 (rank: 146 out of 28,637)
    • molecular biology: 273 (rank: 7,450 (tie) out of 12,793)
    • neuroscience: 7,008 (rank: 669 out of 46,181)
    • systems biology: 1,673 (rank: 908 (tie) out of 8,481)

Downloads per author, site-wide

Preprints

Molecular and Morphological Signatures of Chordate Development: Two Distinct Pathways, One Tunicate

developmental biology more details view paper

No bioRxiv download data for this paper yet.

Single-cell transcriptomic characterization of 20 organs and tissues from individual mice creates a Tabula Muris

cell biology more details view paper
  • Downloaded 11,718 times
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    • Site-wide: 78 out of 63,068
    • In cell biology: 2 out of 3,008
  • Year to date:
    • Site-wide: 606 out of 63,068
  • Since beginning of last month:
    • Site-wide: 1,480 out of 63,068

A Single Cell Transcriptomic Atlas Characterizes Aging Tissues in the Mouse

cell biology more details view paper
  • Downloaded 3,325 times
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    • Site-wide: 888 out of 63,068
    • In cell biology: 25 out of 3,008
  • Year to date:
    • Site-wide: 146 out of 63,068
  • Since beginning of last month:
    • Site-wide: 159 out of 63,068

A molecular cell atlas of the human lung from single cell RNA sequencing

genomics more details view paper
  • Downloaded 3,107 times
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    • Site-wide: 1,013 out of 63,068
    • In genomics: 250 out of 4,328
  • Year to date:
    • Site-wide: 171 out of 63,068
  • Since beginning of last month:
    • Site-wide: 26 out of 63,068

Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-cell RNA Sequencing

genomics more details view paper
  • Downloaded 2,593 times
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    • Site-wide: 1,397 out of 63,068
    • In genomics: 323 out of 4,328
  • Year to date:
    • Site-wide: 15,375 out of 63,068
  • Since beginning of last month:
    • Site-wide: 14,082 out of 63,068

Developmental heterogeneity of microglia and brain myeloid cells revealed by deep single-cell RNA sequencing

neuroscience more details view paper
  • Downloaded 2,410 times
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    • Site-wide: 1,611 out of 63,068
    • In neuroscience: 227 out of 11,260
  • Year to date:
    • Site-wide: 1,098 out of 63,068
  • Since beginning of last month:
    • Site-wide: 2,127 out of 63,068

The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude

genomics more details view paper
  • Downloaded 2,007 times
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    • Site-wide: 2,231 out of 63,068
    • In genomics: 472 out of 4,328
  • Year to date:
    • Site-wide: 402 out of 63,068
  • Since beginning of last month:
    • Site-wide: 1,499 out of 63,068

Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns.

genomics more details view paper
  • Downloaded 1,697 times
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    • Site-wide: 2,968 out of 63,068
    • In genomics: 587 out of 4,328
  • Year to date:
    • Site-wide: 25,703 out of 63,068
  • Since beginning of last month:
    • Site-wide: 39,287 out of 63,068

Single-cell RNA-seq reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress

systems biology more details view paper
  • Downloaded 1,673 times
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    • Site-wide: 3,042 out of 63,068
    • In systems biology: 74 out of 1,786
  • Year to date:
    • Site-wide: 37,327 out of 63,068
  • Since beginning of last month:
    • Site-wide: 39,790 out of 63,068

Serotonin Neurons in the Dorsal and Medial Raphe Nuclei: from Single-Cell Transcriptomes to Whole-Brain Projections

neuroscience more details view paper
  • Downloaded 1,638 times
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    • Site-wide: 3,144 out of 63,068
    • In neuroscience: 481 out of 11,260
  • Year to date:
    • Site-wide: 594 out of 63,068
  • Since beginning of last month:
    • Site-wide: 906 out of 63,068

Self-assembling Manifolds in Single-cell RNA Sequencing Data

bioinformatics more details view paper
  • Downloaded 1,602 times
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    • Site-wide: 3,258 out of 63,068
    • In bioinformatics: 658 out of 6,269
  • Year to date:
    • Site-wide: 2,460 out of 63,068
  • Since beginning of last month:
    • Site-wide: 3,460 out of 63,068

Pancreas patch-seq links physiologic dysfunction in diabetes to single-cell transcriptomic phenotypes

genomics more details view paper
  • Downloaded 1,566 times
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    • Site-wide: 3,381 out of 63,068
    • In genomics: 646 out of 4,328
  • Year to date:
    • Site-wide: 642 out of 63,068
  • Since beginning of last month:
    • Site-wide: 1,582 out of 63,068

Nonivasive prenatal diagnosis of single-gene disorders using droplet digital PCR

genetics more details view paper
  • Downloaded 1,519 times
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    • Site-wide: 3,566 out of 63,068
    • In genetics: 311 out of 3,574
  • Year to date:
    • Site-wide: 7,208 out of 63,068
  • Since beginning of last month:
    • Site-wide: 11,653 out of 63,068

Single-cell analysis identifies EpCAM+/CDH6+/TROP-2- cells as human liver progenitors.

cell biology more details view paper
  • Downloaded 1,507 times
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    • Site-wide: 3,615 out of 63,068
    • In cell biology: 99 out of 3,008
  • Year to date:
    • Site-wide: 3,532 out of 63,068
  • Since beginning of last month:
    • Site-wide: 18,002 out of 63,068

Detection of early stage pancreatic cancer using 5-hydroxymethylcytosine signatures in circulating cell free DNA

cancer biology more details view paper
  • Downloaded 1,487 times
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    • Site-wide: 3,694 out of 63,068
    • In cancer biology: 93 out of 2,072
  • Year to date:
    • Site-wide: 4,133 out of 63,068
  • Since beginning of last month:
    • Site-wide: 4,311 out of 63,068

c-Jun Overexpressing CAR-T Cells are Exhaustion-Resistant and Mediate Enhanced Antitumor Activity

immunology more details view paper
  • Downloaded 1,481 times
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    • Site-wide: 3,724 out of 63,068
    • In immunology: 47 out of 1,568
  • Year to date:
    • Site-wide: 726 out of 63,068
  • Since beginning of last month:
    • Site-wide: 346 out of 63,068

Humans are colonized by many uncharacterized and highly divergent microbes

microbiology more details view paper
  • Downloaded 1,462 times
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    • Site-wide: 3,812 out of 63,068
    • In microbiology: 114 out of 5,043
  • Year to date:
    • Site-wide: 45,774 out of 63,068
  • Since beginning of last month:
    • Site-wide: 58,896 out of 63,068

Single cell RNAseq provides a molecular and cellular cartography of changes to the human endometrium through the menstrual cycle

genomics more details view paper
  • Downloaded 1,391 times
  • Download rankings, all-time:
    • Site-wide: 4,136 out of 63,068
    • In genomics: 752 out of 4,328
  • Year to date:
    • Site-wide: 2,403 out of 63,068
  • Since beginning of last month:
    • Site-wide: 2,358 out of 63,068

Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples

microbiology more details view paper
  • Downloaded 1,382 times
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    • Site-wide: 4,179 out of 63,068
    • In microbiology: 131 out of 5,043
  • Year to date:
    • Site-wide: 40,478 out of 63,068
  • Since beginning of last month:
    • Site-wide: 44,349 out of 63,068

Aging-related inflammation driven by cellular senescence enhances NAD consumption via activation of CD38+ macrophages

immunology more details view paper
  • Downloaded 1,377 times
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    • Site-wide: 4,206 out of 63,068
    • In immunology: 54 out of 1,568
  • Year to date:
    • Site-wide: 812 out of 63,068
  • Since beginning of last month:
    • Site-wide: 1,369 out of 63,068

Human IgE producing B cells have a unique transcriptional program and generate high affinity, allergen-specific antibodies

immunology more details view paper
  • Downloaded 1,371 times
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    • Site-wide: 4,233 out of 63,068
    • In immunology: 55 out of 1,568
  • Year to date:
    • Site-wide: 3,769 out of 63,068
  • Since beginning of last month:
    • Site-wide: 11,303 out of 63,068

Single-cell transcriptional dynamics of flavivirus infection

microbiology more details view paper
  • Downloaded 1,209 times
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    • Site-wide: 5,184 out of 63,068
    • In microbiology: 186 out of 5,043
  • Year to date:
    • Site-wide: 28,907 out of 63,068
  • Since beginning of last month:
    • Site-wide: 40,197 out of 63,068

Brain endothelial cells are exquisite sensors of age-related circulatory cues

neuroscience more details view paper
  • Downloaded 1,072 times
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    • Site-wide: 6,364 out of 63,068
    • In neuroscience: 997 out of 11,260
  • Year to date:
    • Site-wide: 1,326 out of 63,068
  • Since beginning of last month:
    • Site-wide: 1,014 out of 63,068

Signatures of Selection in the Human Antibody Repertoire: Selective Sweeps, Competing Subclones, and Neutral Drift

immunology more details view paper
  • Downloaded 953 times
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    • Site-wide: 7,657 out of 63,068
    • In immunology: 116 out of 1,568
  • Year to date:
    • Site-wide: 50,899 out of 63,068
  • Since beginning of last month:
    • Site-wide: 46,319 out of 63,068

5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages

genomics more details view paper
  • Downloaded 939 times
  • Download rankings, all-time:
    • Site-wide: 7,832 out of 63,068
    • In genomics: 1,224 out of 4,328
  • Year to date:
    • Site-wide: 37,494 out of 63,068
  • Since beginning of last month:
    • Site-wide: 38,664 out of 63,068

Single-Cell RNAseq analysis of infiltrating neoplastic cells at the migrating front of human glioblastoma

cancer biology more details view paper
  • Downloaded 918 times
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    • Site-wide: 8,147 out of 63,068
    • In cancer biology: 218 out of 2,072
  • Year to date:
    • Site-wide: 41,752 out of 63,068
  • Since beginning of last month:
    • Site-wide: 44,237 out of 63,068

PhaMers identifies novel bacteriophage sequences from thermophilic hot springs

bioinformatics more details view paper
  • Downloaded 848 times
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    • Site-wide: 9,220 out of 63,068
    • In bioinformatics: 1,613 out of 6,269
  • Year to date:
    • Site-wide: 20,747 out of 63,068
  • Since beginning of last month:
    • Site-wide: 22,957 out of 63,068

A mouse tissue atlas of small non-coding RNA

genomics more details view paper
  • Downloaded 820 times
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    • Site-wide: 9,700 out of 63,068
    • In genomics: 1,438 out of 4,328
  • Year to date:
    • Site-wide: 5,962 out of 63,068
  • Since beginning of last month:
    • Site-wide: 6,388 out of 63,068

Dynamics Of The Human Antibody Repertoire Following B-cell Depletion In Systemic Sclerosis

immunology more details view paper
  • Downloaded 807 times
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    • Site-wide: 9,957 out of 63,068
    • In immunology: 158 out of 1,568
  • Year to date:
    • Site-wide: 43,589 out of 63,068
  • Since beginning of last month:
    • Site-wide: 47,100 out of 63,068

Coordinating Receptor Expression and Wiring Specificity in Olfactory Receptor Neurons

neuroscience more details view paper
  • Downloaded 798 times
  • Download rankings, all-time:
    • Site-wide: 10,129 out of 63,068
    • In neuroscience: 1,599 out of 11,260
  • Year to date:
    • Site-wide: 2,194 out of 63,068
  • Since beginning of last month:
    • Site-wide: 5,578 out of 63,068

Discrete and Continuous Cell Identities of the Adult Murine Striatum

neuroscience more details view paper
  • Downloaded 792 times
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    • Site-wide: 10,233 out of 63,068
    • In neuroscience: 1,616 out of 11,260
  • Year to date:
    • Site-wide: 2,223 out of 63,068
  • Since beginning of last month:
    • Site-wide: 6,288 out of 63,068

Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens

microbiology more details view paper
  • Downloaded 747 times
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    • Site-wide: 11,137 out of 63,068
    • In microbiology: 501 out of 5,043
  • Year to date:
    • Site-wide: 16,502 out of 63,068
  • Since beginning of last month:
    • Site-wide: 30,366 out of 63,068

Virus-inclusive single cell RNA sequencing reveals molecular signature predictive of progression to severe dengue infection

immunology more details view paper
  • Downloaded 739 times
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    • Site-wide: 11,306 out of 63,068
    • In immunology: 179 out of 1,568
  • Year to date:
    • Site-wide: 21,478 out of 63,068
  • Since beginning of last month:
    • Site-wide: 29,673 out of 63,068

Evolutionary Origin of the Mammalian Hematopoietic System Found in a Colonial Chordate

immunology more details view paper
  • Downloaded 682 times
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    • Site-wide: 12,707 out of 63,068
    • In immunology: 210 out of 1,568
  • Year to date:
    • Site-wide: 13,635 out of 63,068
  • Since beginning of last month:
    • Site-wide: 13,839 out of 63,068

A Noninvasive Molecular Clock for Fetal Development Predicts Gestational Age and Preterm Delivery

bioengineering more details view paper
  • Downloaded 672 times
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    • Site-wide: 12,981 out of 63,068
    • In bioengineering: 214 out of 1,248
  • Year to date:
    • Site-wide: 35,681 out of 63,068
  • Since beginning of last month:
    • Site-wide: 43,594 out of 63,068

Nucleic Acid Cleavage with a Hyperthermophilic Cas9 from an Unculturable Ignavibacterium

genomics more details view paper
  • Downloaded 525 times
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    • Site-wide: 18,114 out of 63,068
    • In genomics: 2,178 out of 4,328
  • Year to date:
    • Site-wide: 4,553 out of 63,068
  • Since beginning of last month:
    • Site-wide: 18,295 out of 63,068

A single-parasite transcriptional landscape of asexual development in Toxoplasma gondii

bioengineering more details view paper
  • Downloaded 473 times
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    • Site-wide: 20,552 out of 63,068
    • In bioengineering: 355 out of 1,248
  • Year to date:
    • Site-wide: 5,396 out of 63,068
  • Since beginning of last month:
    • Site-wide: 10,258 out of 63,068

Transcriptional program of memory B cell activation, broadly binding anti-influenza antibodies, and bystander activation after vaccination revealed by single-cell transcriptomics

immunology more details view paper
  • Downloaded 435 times
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    • Site-wide: 22,682 out of 63,068
    • In immunology: 410 out of 1,568
  • Year to date:
    • Site-wide: 6,207 out of 63,068
  • Since beginning of last month:
    • Site-wide: 6,338 out of 63,068

Modeling Spatial Correlation of Transcripts With Application to Developing Pancreas

bioinformatics more details view paper
  • Downloaded 378 times
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    • Site-wide: 26,435 out of 63,068
    • In bioinformatics: 3,596 out of 6,269
  • Year to date:
    • Site-wide: 30,219 out of 63,068
  • Since beginning of last month:
    • Site-wide: 50,083 out of 63,068

Viral Taxonomy Derived From Evolutionary Genome Relationships

genomics more details view paper
  • Downloaded 344 times
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    • Site-wide: 29,057 out of 63,068
    • In genomics: 2,904 out of 4,328
  • Year to date:
    • Site-wide: 26,961 out of 63,068
  • Since beginning of last month:
    • Site-wide: 31,161 out of 63,068

Matrix-corrected mass spectrometry enables sensitive detection of food allergens and reveals widespread soy contamination of processed foods

immunology more details view paper
  • Downloaded 332 times
  • Download rankings, all-time:
    • Site-wide: 30,106 out of 63,068
    • In immunology: 578 out of 1,568
  • Year to date:
    • Site-wide: 44,094 out of 63,068
  • Since beginning of last month:
    • Site-wide: 33,178 out of 63,068

Molecular and genetic regulation of pig pancreatic islet cell development

developmental biology more details view paper
  • Downloaded 303 times
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    • Site-wide: 32,726 out of 63,068
    • In developmental biology: 947 out of 1,876
  • Year to date:
    • Site-wide: 11,231 out of 63,068
  • Since beginning of last month:
    • Site-wide: 4,414 out of 63,068

Persistent transcriptional programs are associated with remote memory in diverse cells of the medial prefrontal cortex

neuroscience more details view paper
  • Downloaded 298 times
  • Download rankings, all-time:
    • Site-wide: 33,236 out of 63,068
    • In neuroscience: 5,727 out of 11,260
  • Year to date:
    • Site-wide: 11,551 out of 63,068
  • Since beginning of last month:
    • Site-wide: 565 out of 63,068

Non-invasive characterization of human bone marrow by cell free messenger-RNA reveals response to growth factor stimulation and hematopoietic reconstitution after transplantation

molecular biology more details view paper
  • Downloaded 273 times
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    • Site-wide: 35,645 out of 63,068
    • In molecular biology: 1,034 out of 1,980
  • Year to date:
    • Site-wide: 13,201 out of 63,068
  • Since beginning of last month:
    • Site-wide: 20,559 out of 63,068

Cell-free DNA Reveals Potential Zoonotic Reservoirs in Non-Human Primates

microbiology more details view paper
  • Downloaded 224 times
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    • Site-wide: 41,175 out of 63,068
    • In microbiology: 2,766 out of 5,043
  • Year to date:
    • Site-wide: 29,205 out of 63,068
  • Since beginning of last month:
    • Site-wide: 22,619 out of 63,068

A T cell behavioral manifold couples speed and turning to create heterogeneity in vivo

biophysics more details view paper
  • Downloaded 124 times
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    • Site-wide: 54,303 out of 63,068
    • In biophysics: 2,346 out of 2,674
  • Year to date:
    • Site-wide: 33,943 out of 63,068
  • Since beginning of last month:
    • Site-wide: 2,552 out of 63,068

Functional characterization and lineage analysis of broadly neutralizing human antibodies against dengue virus identified by single B cell transcriptomics

microbiology more details view paper
  • Downloaded 90 times
  • Download rankings, all-time:
    • Site-wide: 58,167 out of 63,068
    • In microbiology: 4,492 out of 5,043
  • Year to date:
    • Site-wide: 43,770 out of 63,068
  • Since beginning of last month:
    • Site-wide: 4,156 out of 63,068

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