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Author: Martin Hemberg

Rankings

  • All-time downloads: 48,317 (rank: 2,722 )
  • Categories:
    • bioinformatics: 23,992 (rank: 121 )
    • cell biology: 12,553 (rank: 188 (tie) )
    • developmental biology: 733 (rank: 5,468 (tie) )
    • genomics: 6,312 (rank: 3,251 )
    • molecular biology: 4,196 (rank: 686 )
    • neuroscience: 531 (rank: 38,776 (tie) )

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 12,553 times
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    • Site-wide: 542
    • In cell biology: 4
  • Year to date:
    • Site-wide: 18,069
  • Since beginning of last month:
    • Site-wide: 18,069

SC3 - consensus clustering of single-cell RNA-Seq data

bioinformatics more details view paper
  • Downloaded 5,294 times
  • Download rankings, all-time:
    • Site-wide: 1,713
    • In bioinformatics: 138
  • Year to date:
    • Site-wide: 23,198
  • Since beginning of last month:
    • Site-wide: 23,198

Dropout-based feature selection for scRNASeq

bioinformatics more details view paper
  • Downloaded 5,116 times
  • Download rankings, all-time:
    • Site-wide: 1,793
    • In bioinformatics: 152
  • Year to date:
    • Site-wide: 15,419
  • Since beginning of last month:
    • Site-wide: 15,419

scmap - A tool for unsupervised projection of single cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 3,807 times
  • Download rankings, all-time:
    • Site-wide: 2,729
    • In bioinformatics: 263
  • Year to date:
    • Site-wide: 21,249
  • Since beginning of last month:
    • Site-wide: 21,249

The Malaria Cell Atlas: a comprehensive reference of single parasite transcriptomes across the complete Plasmodium life cycle

genomics more details view paper
  • Downloaded 3,076 times
  • Download rankings, all-time:
    • Site-wide: 3,712
    • In genomics: 433
  • Year to date:
    • Site-wide: 53,338
  • Since beginning of last month:
    • Site-wide: 53,338

Genomic positional conservation identifies topological anchor point (tap)RNAs linked to developmental loci

molecular biology more details view paper
  • Downloaded 2,644 times
  • Download rankings, all-time:
    • Site-wide: 4,619
    • In molecular biology: 105
  • Year to date:
    • Site-wide: 76,977
  • Since beginning of last month:
    • Site-wide: 76,977

souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes

bioinformatics more details view paper
  • Downloaded 2,560 times
  • Download rankings, all-time:
    • Site-wide: 4,815
    • In bioinformatics: 539
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Discrete Distributional Differential Expression (D3E) - A Tool for Gene Expression Analysis of Single-cell RNA-seq Data

bioinformatics more details view paper
  • Downloaded 1,869 times
  • Download rankings, all-time:
    • Site-wide: 7,655
    • In bioinformatics: 942
  • Year to date:
    • Site-wide: 42,829
  • Since beginning of last month:
    • Site-wide: 42,829

Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench

bioinformatics more details view paper
  • Downloaded 1,556 times
  • Download rankings, all-time:
    • Site-wide: 10,099
    • In bioinformatics: 1,257
  • Year to date:
    • Site-wide: 7,240
  • Since beginning of last month:
    • Site-wide: 7,240

The Aquarius/EMB-4 helicase licenses co-transcriptional gene silencing

molecular biology more details view paper
  • Downloaded 1,552 times
  • Download rankings, all-time:
    • Site-wide: 10,141
    • In molecular biology: 275
  • Year to date:
    • Site-wide: 57,192
  • Since beginning of last month:
    • Site-wide: 57,192

Simulation based benchmarking of isoform quantification in single-cell RNA-seq

bioinformatics more details view paper
  • Downloaded 1,234 times
  • Download rankings, all-time:
    • Site-wide: 14,277
    • In bioinformatics: 1,766
  • Year to date:
    • Site-wide: 76,815
  • Since beginning of last month:
    • Site-wide: 76,815

Non-canonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis

genomics more details view paper
  • Downloaded 964 times
  • Download rankings, all-time:
    • Site-wide: 20,593
    • In genomics: 2,076
  • Year to date:
    • Site-wide: 27,681
  • Since beginning of last month:
    • Site-wide: 27,681

Fast searches of large collections of single cell data using scfind

bioinformatics more details view paper
  • Downloaded 866 times
  • Download rankings, all-time:
    • Site-wide: 24,082
    • In bioinformatics: 2,879
  • Year to date:
    • Site-wide: 27,696
  • Since beginning of last month:
    • Site-wide: 27,696

Sandwich cortical lamination and single-cell analysis decodes the developing spatial processing system.

developmental biology more details view paper
  • Downloaded 705 times
  • Download rankings, all-time:
    • Site-wide: 32,025
    • In developmental biology: 674
  • Year to date:
    • Site-wide: 36,374
  • Since beginning of last month:
    • Site-wide: 36,374

Alternative splicing modulation by G-quadruplexes

genomics more details view paper
  • Downloaded 685 times
  • Download rankings, all-time:
    • Site-wide: 33,330
    • In genomics: 2,954
  • Year to date:
    • Site-wide: 35,260
  • Since beginning of last month:
    • Site-wide: 35,260

MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development

genomics more details view paper
  • Downloaded 658 times
  • Download rankings, all-time:
    • Site-wide: 35,163
    • In genomics: 3,072
  • Year to date:
    • Site-wide: 25,342
  • Since beginning of last month:
    • Site-wide: 25,342

Predicting the impact of sequence motifs on gene regulation using single-cell data

bioinformatics more details view paper
  • Downloaded 645 times
  • Download rankings, all-time:
    • Site-wide: 36,055
    • In bioinformatics: 4,022
  • Year to date:
    • Site-wide: 8,002
  • Since beginning of last month:
    • Site-wide: 8,002

Transcription-coupled repair and mismatch repair contribute towards preserving genome integrity at mononucleotide repeat tracts

genomics more details view paper
  • Downloaded 551 times
  • Download rankings, all-time:
    • Site-wide: 44,029
    • In genomics: 3,601
  • Year to date:
    • Site-wide: 84,460
  • Since beginning of last month:
    • Site-wide: 84,460

Obstacles to Studying Alternative Splicing Using scRNA-seq

bioinformatics more details view paper
  • Downloaded 536 times
  • Download rankings, all-time:
    • Site-wide: 45,564
    • In bioinformatics: 4,818
  • Year to date:
    • Site-wide: 92,994
  • Since beginning of last month:
    • Site-wide: 92,994

Molecular and cellular pathology of monogenic Alzheimer's disease at single cell resolution

neuroscience more details view paper
  • Downloaded 531 times
  • Download rankings, all-time:
    • Site-wide: 46,104
    • In neuroscience: 6,749
  • Year to date:
    • Site-wide: 9,970
  • Since beginning of last month:
    • Site-wide: 9,970

MPRAnator: a web-based tool for the design of Massively Parallel Reporter Assay experiments.

bioinformatics more details view paper
  • Downloaded 509 times
  • Download rankings, all-time:
    • Site-wide: 48,331
    • In bioinformatics: 5,051
  • Year to date:
    • Site-wide: 116,810
  • Since beginning of last month:
    • Site-wide: 116,810

Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution

genomics more details view paper
  • Downloaded 378 times
  • Download rankings, all-time:
    • Site-wide: 66,232
    • In genomics: 4,714
  • Year to date:
    • Site-wide: 45,694
  • Since beginning of last month:
    • Site-wide: 45,694

Single paternal Dexamethasone challenge programs offspring metabolism and reveals circRNAs as novel candidates in RNA-mediated inheritance

developmental biology more details view paper
  • Downloaded 28 times
  • Download rankings, all-time:
    • Site-wide: 127,216
    • In developmental biology: 3,336
  • Year to date:
    • Site-wide: 41,838
  • Since beginning of last month:
    • Site-wide: 41,838

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