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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,232 bioRxiv papers from 276,305 authors.

Author: Martin Hemberg

Rankings

  • All-time downloads: 35,922 (rank: 419 out of 276,305)
  • Categories:
    • bioinformatics: 16,576 (rank: 100 out of 24,292)
    • cell biology: 11,691 (rank: 47 (tie) out of 18,173)
    • developmental biology: 205 (rank: 7,673 (tie) out of 10,225)
    • genomics: 3,620 (rank: 3,830 (tie) out of 31,848)
    • molecular biology: 3,830 (rank: 178 out of 12,507)

Downloads per author, site-wide

Preprints

Obstacles to Studying Alternative Splicing Using scRNA-seq

bioinformatics more details view paper

No bioRxiv download data for this paper yet.

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,691 times
  • Download rankings, all-time:
    • Site-wide: 76 out of 62,232
    • In cell biology: 2 out of 2,971
  • Year to date:
    • Site-wide: 4,738 out of 62,232
  • Since beginning of last month:
    • Site-wide: 4,485 out of 62,232

SC3 - consensus clustering of single-cell RNA-Seq data

bioinformatics more details view paper
  • Downloaded 4,798 times
  • Download rankings, all-time:
    • Site-wide: 426 out of 62,232
    • In bioinformatics: 84 out of 6,212
  • Year to date:
    • Site-wide: 5,431 out of 62,232
  • Since beginning of last month:
    • Site-wide: 13,765 out of 62,232

Dropout-based feature selection for scRNASeq

bioinformatics more details view paper
  • Downloaded 4,220 times
  • Download rankings, all-time:
    • Site-wide: 557 out of 62,232
    • In bioinformatics: 109 out of 6,212
  • Year to date:
    • Site-wide: 2,000 out of 62,232
  • Since beginning of last month:
    • Site-wide: 2,545 out of 62,232

scmap - A tool for unsupervised projection of single cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 3,254 times
  • Download rankings, all-time:
    • Site-wide: 909 out of 62,232
    • In bioinformatics: 183 out of 6,212
  • Year to date:
    • Site-wide: 4,700 out of 62,232
  • Since beginning of last month:
    • Site-wide: 4,347 out of 62,232

Genomic positional conservation identifies topological anchor point (tap)RNAs linked to developmental loci

molecular biology more details view paper
  • Downloaded 2,435 times
  • Download rankings, all-time:
    • Site-wide: 1,548 out of 62,232
    • In molecular biology: 39 out of 1,946
  • Year to date:
    • Site-wide: 47,191 out of 62,232
  • Since beginning of last month:
    • Site-wide: 30,817 out of 62,232

The Malaria Cell Atlas: a comprehensive reference of single parasite transcriptomes across the complete Plasmodium life cycle

genomics more details view paper
  • Downloaded 2,197 times
  • Download rankings, all-time:
    • Site-wide: 1,856 out of 62,232
    • In genomics: 413 out of 4,277
  • Year to date:
    • Site-wide: 307 out of 62,232
  • Since beginning of last month:
    • Site-wide: 855 out of 62,232

Discrete Distributional Differential Expression (D3E) - A Tool for Gene Expression Analysis of Single-cell RNA-seq Data

bioinformatics more details view paper
  • Downloaded 1,624 times
  • Download rankings, all-time:
    • Site-wide: 3,131 out of 62,232
    • In bioinformatics: 635 out of 6,212
  • Year to date:
    • Site-wide: 28,194 out of 62,232
  • Since beginning of last month:
    • Site-wide: 33,067 out of 62,232

The Aquarius/EMB-4 helicase licenses co-transcriptional gene silencing

molecular biology more details view paper
  • Downloaded 1,395 times
  • Download rankings, all-time:
    • Site-wide: 4,050 out of 62,232
    • In molecular biology: 115 out of 1,946
  • Year to date:
    • Site-wide: 47,354 out of 62,232
  • Since beginning of last month:
    • Site-wide: 42,046 out of 62,232

Simulation based benchmarking of isoform quantification in single-cell RNA-seq

bioinformatics more details view paper
  • Downloaded 1,089 times
  • Download rankings, all-time:
    • Site-wide: 6,091 out of 62,232
    • In bioinformatics: 1,152 out of 6,212
  • Year to date:
    • Site-wide: 16,466 out of 62,232
  • Since beginning of last month:
    • Site-wide: 32,323 out of 62,232

souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes

bioinformatics more details view paper
  • Downloaded 997 times
  • Download rankings, all-time:
    • Site-wide: 6,990 out of 62,232
    • In bioinformatics: 1,274 out of 6,212
  • Year to date:
    • Site-wide: 1,402 out of 62,232
  • Since beginning of last month:
    • Site-wide: 810 out of 62,232

Non-canonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis

genomics more details view paper
  • Downloaded 744 times
  • Download rankings, all-time:
    • Site-wide: 10,971 out of 62,232
    • In genomics: 1,580 out of 4,277
  • Year to date:
    • Site-wide: 40,572 out of 62,232
  • Since beginning of last month:
    • Site-wide: 32,814 out of 62,232

MPRAnator: a web-based tool for the design of Massively Parallel Reporter Assay experiments.

bioinformatics more details view paper
  • Downloaded 415 times
  • Download rankings, all-time:
    • Site-wide: 23,420 out of 62,232
    • In bioinformatics: 3,330 out of 6,212
  • Year to date:
    • Site-wide: 55,647 out of 62,232
  • Since beginning of last month:
    • Site-wide: 46,858 out of 62,232

Alternative splicing modulation by G-quadruplexes

genomics more details view paper
  • Downloaded 346 times
  • Download rankings, all-time:
    • Site-wide: 28,312 out of 62,232
    • In genomics: 2,872 out of 4,277
  • Year to date:
    • Site-wide: 8,590 out of 62,232
  • Since beginning of last month:
    • Site-wide: 5,074 out of 62,232

Transcription-coupled repair and mismatch repair contribute towards preserving genome integrity at mononucleotide repeat tracts

genomics more details view paper
  • Downloaded 333 times
  • Download rankings, all-time:
    • Site-wide: 29,341 out of 62,232
    • In genomics: 2,935 out of 4,277
  • Year to date:
    • Site-wide: 9,115 out of 62,232
  • Since beginning of last month:
    • Site-wide: 11,200 out of 62,232

Sandwich cortical lamination and single-cell analysis decodes the developing spatial processing system.

developmental biology more details view paper
  • Downloaded 205 times
  • Download rankings, all-time:
    • Site-wide: 42,734 out of 62,232
    • In developmental biology: 1,303 out of 1,854
  • Year to date:
    • Site-wide: 18,484 out of 62,232
  • Since beginning of last month:
    • Site-wide: 4,034 out of 62,232

Fast searches of large collections of single cell data using scfind

bioinformatics more details view paper
  • Downloaded 179 times
  • Download rankings, all-time:
    • Site-wide: 45,921 out of 62,232
    • In bioinformatics: 5,181 out of 6,212
  • Year to date:
    • Site-wide: 21,789 out of 62,232
  • Since beginning of last month:
    • Site-wide: 901 out of 62,232

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