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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,230 bioRxiv papers from 306,630 authors.

Author: Iddo Friedberg

Rankings

  • All-time downloads: 7,038 (rank: 8,006 (tie) out of 306,630)
  • Categories:
    • bioinformatics: 4,787 (rank: 1,367 out of 26,738)
    • evolutionary biology: 570 (rank: 6,994 (tie) out of 16,504)
    • microbiology: 731 (rank: 6,129 (tie) out of 31,654)
    • neuroscience: 232 (rank: 37,875 (tie) out of 51,754)
    • plant biology: 718 (rank: 2,762 (tie) out of 11,184)

Downloads per author, site-wide

Preprints

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

bioinformatics more details view paper
  • Downloaded 1,126 times
  • Download rankings, all-time:
    • Site-wide: 6,748 out of 70,230
    • In bioinformatics: 1,239 out of 6,887
  • Year to date:
    • Site-wide: 5,275 out of 70,230
  • Since beginning of last month:
    • Site-wide: 3,410 out of 70,230

Identifying Antimicrobial Peptides using Word Embedding with Deep Recurrent Neural Networks

bioinformatics more details view paper
  • Downloaded 1,025 times
  • Download rankings, all-time:
    • Site-wide: 7,848 out of 70,230
    • In bioinformatics: 1,388 out of 6,887
  • Year to date:
    • Site-wide: 18,629 out of 70,230
  • Since beginning of last month:
    • Site-wide: 25,294 out of 70,230

Maize GO Annotation - Methods, Evaluation, and Review (maize-GAMER)

bioinformatics more details view paper
  • Downloaded 742 times
  • Download rankings, all-time:
    • Site-wide: 13,009 out of 70,230
    • In bioinformatics: 2,115 out of 6,887
  • Year to date:
    • Site-wide: 34,779 out of 70,230
  • Since beginning of last month:
    • Site-wide: 55,370 out of 70,230

Crowdsourcing Image Analysis for Plant Phenomics to Generate Ground Truth Data for Machine Learning

plant biology more details view paper
  • Downloaded 718 times
  • Download rankings, all-time:
    • Site-wide: 13,654 out of 70,230
    • In plant biology: 317 out of 2,062
  • Year to date:
    • Site-wide: 29,101 out of 70,230
  • Since beginning of last month:
    • Site-wide: 25,788 out of 70,230

MetaRiPPquest: A Peptidogenomics Approach for the Discovery of Ribosomally Synthesized and Post-translationally Modified Peptides

bioinformatics more details view paper
  • Downloaded 661 times
  • Download rankings, all-time:
    • Site-wide: 15,357 out of 70,230
    • In bioinformatics: 2,402 out of 6,887
  • Year to date:
    • Site-wide: 53,309 out of 70,230
  • Since beginning of last month:
    • Site-wide: 42,454 out of 70,230

Novel antimicrobial peptide discovery using machine learning and biophysical selection of minimal bacteriocin domains

microbiology more details view paper
  • Downloaded 651 times
  • Download rankings, all-time:
    • Site-wide: 15,661 out of 70,230
    • In microbiology: 792 out of 5,692
  • Year to date:
    • Site-wide: 47,480 out of 70,230
  • Since beginning of last month:
    • Site-wide: 40,551 out of 70,230

SwiftOrtho: a Fast, Memory-Efficient, Multiple Genome Orthology Classifier

bioinformatics more details view paper
  • Downloaded 621 times
  • Download rankings, all-time:
    • Site-wide: 16,764 out of 70,230
    • In bioinformatics: 2,577 out of 6,887
  • Year to date:
    • Site-wide: 3,687 out of 70,230
  • Since beginning of last month:
    • Site-wide: 23,263 out of 70,230

Tracing the Ancestry of Operons in Bacteria

evolutionary biology more details view paper
  • Downloaded 570 times
  • Download rankings, all-time:
    • Site-wide: 18,900 out of 70,230
    • In evolutionary biology: 1,343 out of 4,611
  • Year to date:
    • Site-wide: 45,759 out of 70,230
  • Since beginning of last month:
    • Site-wide: 10,867 out of 70,230

Self-Attention based model for de-novo antibiotic resistant gene classification with enhanced reliability for out of distribution data detection

bioinformatics more details view paper
  • Downloaded 334 times
  • Download rankings, all-time:
    • Site-wide: 34,922 out of 70,230
    • In bioinformatics: 4,347 out of 6,887
  • Year to date:
    • Site-wide: 56,412 out of 70,230
  • Since beginning of last month:
    • Site-wide: 44,989 out of 70,230

New Drosophila long-term memory genes revealed by assessing computational function prediction methods.

neuroscience more details view paper
  • Downloaded 232 times
  • Download rankings, all-time:
    • Site-wide: 46,697 out of 70,230
    • In neuroscience: 8,306 out of 12,633
  • Year to date:
    • Site-wide: 24,013 out of 70,230
  • Since beginning of last month:
    • Site-wide: 49,966 out of 70,230

Hierarchical Markov Random Field model captures spatial dependency in gene expression, demonstrating regulation via the 3D genome

bioinformatics more details view paper
  • Downloaded 148 times
  • Download rankings, all-time:
    • Site-wide: 58,922 out of 70,230
    • In bioinformatics: 6,182 out of 6,887
  • Year to date:
    • Site-wide: 4,324 out of 70,230
  • Since beginning of last month:
    • Site-wide: 1,582 out of 70,230

Identifying Core Operons in Metagenomic Data

bioinformatics more details view paper
  • Downloaded 130 times
  • Download rankings, all-time:
    • Site-wide: 61,474 out of 70,230
    • In bioinformatics: 6,361 out of 6,887
  • Year to date:
    • Site-wide: 39,500 out of 70,230
  • Since beginning of last month:
    • Site-wide: 1,600 out of 70,230

Unraveling a tangled skein: Evolutionary analysis of the bacterial gibberellin biosynthetic operon

microbiology more details view paper
  • Downloaded 80 times
  • Download rankings, all-time:
    • Site-wide: 67,421 out of 70,230
    • In microbiology: 5,341 out of 5,692
  • Year to date:
    • Site-wide: 60,023 out of 70,230
  • Since beginning of last month:
    • Site-wide: 3,439 out of 70,230

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