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Author: Yatish Turakhia

Rankings

  • All-time downloads: 14,556 (rank: 16,981 (tie) )
  • Categories:
    • bioinformatics: 877 (rank: 20,045 (tie) )
    • evolutionary biology: 3,495 (rank: 1,318 )
    • genomics: 10,184 (rank: 2,184 (tie) )

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Preprints

Darwin: A Hardware-acceleration Framework for Genomic Sequence Alignment

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    • Site-wide: 3,069
    • In genomics: 298
  • Year to date:
    • Site-wide: 19,109
  • Since beginning of last month:
    • Site-wide: 20,511

Stability of SARS-CoV-2 Phylogenies

genomics more details view paper
  • Downloaded 1,593 times
  • Download rankings, all-time:
    • Site-wide: 13,913
    • In genomics: 1,369
  • Year to date:
    • Site-wide: 43,679
  • Since beginning of last month:
    • Site-wide: 139,678

A novel unbiased test for molecular convergent evolution and discoveries in echolocating, aquatic and high-altitude mammals

evolutionary biology more details view paper
  • Downloaded 1,368 times
  • Download rankings, all-time:
    • Site-wide: 17,738
    • In evolutionary biology: 595
  • Year to date:
    • Site-wide: 102,999
  • Since beginning of last month:
    • Site-wide: 138,962

A phylogeny-based metric for estimating changes in transmissibility from recurrent mutations in SARS-CoV-2

genomics more details view paper
  • Downloaded 1,279 times
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    • Site-wide: 19,614
    • In genomics: 1,833
  • Year to date:
    • Site-wide: 3,672
  • Since beginning of last month:
    • Site-wide: 6,320

Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic

genomics more details view paper
  • Downloaded 1,190 times
  • Download rankings, all-time:
    • Site-wide: 21,873
    • In genomics: 2,041
  • Year to date:
    • Site-wide: 8,501
  • Since beginning of last month:
    • Site-wide: 61,857

Mutation rates and selection on synonymous mutations in SARS-CoV-2

evolutionary biology more details view paper
  • Downloaded 1,062 times
  • Download rankings, all-time:
    • Site-wide: 26,028
    • In evolutionary biology: 1,040
  • Year to date:
    • Site-wide: 4,844
  • Since beginning of last month:
    • Site-wide: 22,226

A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

genomics more details view paper
  • Downloaded 1,000 times
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    • Site-wide: 28,398
    • In genomics: 2,504
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    • Site-wide: 5,297
  • Since beginning of last month:
    • Site-wide: 24,772

Loss of critical developmental and human disease-causing genes in 58 mammals

genomics more details view paper
  • Downloaded 603 times
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    • Site-wide: 58,139
    • In genomics: 4,246
  • Year to date:
    • Site-wide: 99,739
  • Since beginning of last month:
    • Site-wide: 115,032

Pandemic-Scale Phylogenomics Reveals Elevated Recombination Rates in the SARS-CoV-2 Spike Region

evolutionary biology more details view paper
  • Downloaded 555 times
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    • Site-wide: 64,356
    • In evolutionary biology: 3,185
  • Year to date:
    • Site-wide: 13,356
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    • Site-wide: 5,678

Champagne: Whole-genome phylogenomic character matrix method places Myomorpha basal in Rodentia

evolutionary biology more details view paper
  • Downloaded 510 times
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    • Site-wide: 71,225
    • In evolutionary biology: 3,570
  • Year to date:
    • Site-wide: 97,770
  • Since beginning of last month:
    • Site-wide: 61,383

phastSim: efficient simulation of sequence evolution for pandemic-scale datasets

bioinformatics more details view paper
  • Downloaded 445 times
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    • Site-wide: 82,590
    • In bioinformatics: 7,439
  • Year to date:
    • Site-wide: 18,797
  • Since beginning of last month:
    • Site-wide: 32,273

A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees

bioinformatics more details view paper
  • Downloaded 432 times
  • Download rankings, all-time:
    • Site-wide: 85,319
    • In bioinformatics: 7,653
  • Year to date:
    • Site-wide: 19,698
  • Since beginning of last month:
    • Site-wide: 59,529

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