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Author: Jens Nielsen

Rankings

  • All-time downloads: 49,845 (rank: 3,299 )
  • Categories:
    • biochemistry: 280 (rank: 19,528 (tie) )
    • bioengineering: 1,806 (rank: 1,744 (tie) )
    • bioinformatics: 4,851 (rank: 2,690 )
    • cancer biology: 1,243 (rank: 6,858 (tie) )
    • ecology: 27 (rank: 24,045 (tie) )
    • endocrinology: 304 (rank: 733 (tie) )
    • epidemiology: 17,494 (rank: 887 (tie) )
    • infectious diseases: 3,788 (rank: 10,893 (tie) )
    • microbiology: 535 (rank: 28,968 (tie) )
    • molecular biology: 3,199 (rank: 1,385 (tie) )
    • pharmacology and therapeutics: 477 (rank: 546 (tie) )
    • physiology: 517 (rank: 3,174 (tie) )
    • public and global health: 1,023 (rank: 3,948 (tie) )
    • synthetic biology: 580 (rank: 3,553 (tie) )
    • systems biology: 13,721 (rank: 180 )

Downloads per author, site-wide

Preprints

Vaccine effectiveness when combining the ChAdOx1 vaccine as the first dose with an mRNA COVID-19 vaccine as the second dose

epidemiology more details view paper

No download data for this paper yet.

A network-based approach reveals the dysregulated transcriptional regulation in non-alcohol fatty liver disease

systems biology more details view paper

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Vaccine effectiveness after 1st and 2nd dose of the BNT162b2 mRNA Covid-19 Vaccine in long-term care facility residents and healthcare workers - a Danish cohort study

epidemiology more details view paper
  • Downloaded 17,494 times
  • Download rankings, all-time:
    • Site-wide: 446
    • In epidemiology: 73
  • Year to date:
    • Site-wide: 84
  • Since beginning of last month:
    • Site-wide: 200

Combined metabolic cofactor supplementation accelerates recovery in mild-to-moderate COVID-19

infectious diseases more details view paper
  • Downloaded 3,788 times
  • Download rankings, all-time:
    • Site-wide: 3,445
    • In infectious diseases: 704
  • Year to date:
    • Site-wide: 714
  • Since beginning of last month:
    • Site-wide: 1,911

The human secretome – the proteins secreted from human cells

molecular biology more details view paper
  • Downloaded 3,199 times
  • Download rankings, all-time:
    • Site-wide: 4,376
    • In molecular biology: 97
  • Year to date:
    • Site-wide: 8,460
  • Since beginning of last month:
    • Site-wide: 7,074

Evolution from adherent to suspension – systems biology of HEK293 cell line development

systems biology more details view paper
  • Downloaded 2,414 times
  • Download rankings, all-time:
    • Site-wide: 6,557
    • In systems biology: 107
  • Year to date:
    • Site-wide: 4,297
  • Since beginning of last month:
    • Site-wide: 7,851

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

systems biology more details view paper
  • Downloaded 2,223 times
  • Download rankings, all-time:
    • Site-wide: 7,405
    • In systems biology: 124
  • Year to date:
    • Site-wide: 28,673
  • Since beginning of last month:
    • Site-wide: 15,112

Predictive engineering and optimization of tryptophan metabolism in yeast through a combination of mechanistic and machine learning models

bioengineering more details view paper
  • Downloaded 1,806 times
  • Download rankings, all-time:
    • Site-wide: 10,058
    • In bioengineering: 157
  • Year to date:
    • Site-wide: 30,594
  • Since beginning of last month:
    • Site-wide: 26,116

Machine learning applied to predicting microorganism growth temperatures and enzyme catalytic optima

bioinformatics more details view paper
  • Downloaded 1,418 times
  • Download rankings, all-time:
    • Site-wide: 14,352
    • In bioinformatics: 1,669
  • Year to date:
    • Site-wide: 40,026
  • Since beginning of last month:
    • Site-wide: 43,483

iNetModels 2.0: an interactive visualization and database of multi-omics data

bioinformatics more details view paper
  • Downloaded 1,272 times
  • Download rankings, all-time:
    • Site-wide: 16,929
    • In bioinformatics: 1,975
  • Year to date:
    • Site-wide: 14,823
  • Since beginning of last month:
    • Site-wide: 71,443

Pan-cancer analysis of the metabolic reaction network

cancer biology more details view paper
  • Downloaded 1,243 times
  • Download rankings, all-time:
    • Site-wide: 17,492
    • In cancer biology: 386
  • Year to date:
    • Site-wide: 112,999
  • Since beginning of last month:
    • Site-wide: 117,050

RAVEN 2.0: a versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

systems biology more details view paper
  • Downloaded 1,183 times
  • Download rankings, all-time:
    • Site-wide: 18,814
    • In systems biology: 364
  • Year to date:
    • Site-wide: 73,564
  • Since beginning of last month:
    • Site-wide: 93,022

Genome-scale model of Rhodotorula toruloides metabolism

systems biology more details view paper
  • Downloaded 1,034 times
  • Download rankings, all-time:
    • Site-wide: 23,009
    • In systems biology: 452
  • Year to date:
    • Site-wide: 54,020
  • Since beginning of last month:
    • Site-wide: 49,278

Vaccine effectiveness of the BNT162b2 mRNA COVID-19 vaccine against RT-PCR confirmed SARS-CoV-2 infections, hospitalisations and mortality in prioritised risk groups

public and global health more details view paper
  • Downloaded 1,023 times
  • Download rankings, all-time:
    • Site-wide: 23,336
    • In public and global health: 431
  • Year to date:
    • Site-wide: 2,841
  • Since beginning of last month:
    • Site-wide: 1,671

Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae

bioinformatics more details view paper
  • Downloaded 988 times
  • Download rankings, all-time:
    • Site-wide: 24,567
    • In bioinformatics: 2,808
  • Year to date:
    • Site-wide: 10,675
  • Since beginning of last month:
    • Site-wide: 11,535

Addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq

bioinformatics more details view paper
  • Downloaded 745 times
  • Download rankings, all-time:
    • Site-wide: 36,534
    • In bioinformatics: 3,983
  • Year to date:
    • Site-wide: 54,974
  • Since beginning of last month:
    • Site-wide: 78,826

Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies

systems biology more details view paper
  • Downloaded 635 times
  • Download rankings, all-time:
    • Site-wide: 45,148
    • In systems biology: 995
  • Year to date:
    • Site-wide: 5,666
  • Since beginning of last month:
    • Site-wide: 3,471

Deciphering the tissue specificity of the protein secretory pathway in humans

systems biology more details view paper
  • Downloaded 634 times
  • Download rankings, all-time:
    • Site-wide: 45,217
    • In systems biology: 998
  • Year to date:
    • Site-wide: 140,509
  • Since beginning of last month:
    • Site-wide: 136,222

Discovery of functional alternatively spliced PKM transcripts in human cancers

systems biology more details view paper
  • Downloaded 618 times
  • Download rankings, all-time:
    • Site-wide: 46,673
    • In systems biology: 1,028
  • Year to date:
    • Site-wide: 57,687
  • Since beginning of last month:
    • Site-wide: 44,059

Stress-Induced Expression is Enriched for Evolutionarily Young Genes in Diverse Budding Yeasts

systems biology more details view paper
  • Downloaded 596 times
  • Download rankings, all-time:
    • Site-wide: 48,840
    • In systems biology: 1,085
  • Year to date:
    • Site-wide: 122,428
  • Since beginning of last month:
    • Site-wide: 125,945

Supervised generative design of regulatory DNA forgene expression control

synthetic biology more details view paper
  • Downloaded 580 times
  • Download rankings, all-time:
    • Site-wide: 50,521
    • In synthetic biology: 624
  • Year to date:
    • Site-wide: 6,483
  • Since beginning of last month:
    • Site-wide: 340

SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

systems biology more details view paper
  • Downloaded 559 times
  • Download rankings, all-time:
    • Site-wide: 52,986
    • In systems biology: 1,175
  • Year to date:
    • Site-wide: 117,555
  • Since beginning of last month:
    • Site-wide: 142,976

Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production

microbiology more details view paper
  • Downloaded 535 times
  • Download rankings, all-time:
    • Site-wide: 55,781
    • In microbiology: 3,539
  • Year to date:
    • Site-wide: 46,044
  • Since beginning of last month:
    • Site-wide: 145,921

The Reactobiome Unravels a New Paradigm in Human Gut Microbiome Metabolism

systems biology more details view paper
  • Downloaded 528 times
  • Download rankings, all-time:
    • Site-wide: 56,671
    • In systems biology: 1,289
  • Year to date:
    • Site-wide: 7,472
  • Since beginning of last month:
    • Site-wide: 13,622

Fundamental Constraints In Synchronous Muscle Limit Superfast Motor Control In Vertebrates

physiology more details view paper
  • Downloaded 517 times
  • Download rankings, all-time:
    • Site-wide: 58,158
    • In physiology: 338
  • Year to date:
    • Site-wide: 107,537
  • Since beginning of last month:
    • Site-wide: 138,422

Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments

systems biology more details view paper
  • Downloaded 506 times
  • Download rankings, all-time:
    • Site-wide: 59,513
    • In systems biology: 1,370
  • Year to date:
    • Site-wide: 25,790
  • Since beginning of last month:
    • Site-wide: 132,722

Informing Pharmacokinetic Models with Physiological Data: Oral Population Modeling of L-Serine in Humans

pharmacology and therapeutics more details view paper
  • Downloaded 477 times
  • Download rankings, all-time:
    • Site-wide: 63,552
    • In pharmacology and therapeutics: 65
  • Year to date:
    • Site-wide: 55,093
  • Since beginning of last month:
    • Site-wide: 115,891

Reconstruction and Analysis of a Kluyveromyces marxianus Genome-scale Metabolic Model

systems biology more details view paper
  • Downloaded 466 times
  • Download rankings, all-time:
    • Site-wide: 65,175
    • In systems biology: 1,507
  • Year to date:
    • Site-wide: 141,683
  • Since beginning of last month:
    • Site-wide: 120,595

RMetD2: a tool for integration of relative transcriptomics data into Genome-scale metabolic models

bioinformatics more details view paper
  • Downloaded 428 times
  • Download rankings, all-time:
    • Site-wide: 71,269
    • In bioinformatics: 6,726
  • Year to date:
    • Site-wide: 88,087
  • Since beginning of last month:
    • Site-wide: 74,490

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

systems biology more details view paper
  • Downloaded 395 times
  • Download rankings, all-time:
    • Site-wide: 77,058
    • In systems biology: 1,792
  • Year to date:
    • Site-wide: 11,311
  • Since beginning of last month:
    • Site-wide: 11,240

Saccharomyces cerevisiae displays a stable transcription start site landscape in multiple conditions

systems biology more details view paper
  • Downloaded 394 times
  • Download rankings, all-time:
    • Site-wide: 77,206
    • In systems biology: 1,797
  • Year to date:
    • Site-wide: 122,677
  • Since beginning of last month:
    • Site-wide: 125,609

A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism

systems biology more details view paper
  • Downloaded 300 times
  • Download rankings, all-time:
    • Site-wide: 96,624
    • In systems biology: 2,199
  • Year to date:
    • Site-wide: 51,892
  • Since beginning of last month:
    • Site-wide: 106,306

Transcriptome analysis of EPO and GFP HEK293 Cell-lines Reveal Shifts in Energy and ER Capacity Support Improved Erythropoietin Production in HEK293F Cells

systems biology more details view paper
  • Downloaded 294 times
  • Download rankings, all-time:
    • Site-wide: 98,034
    • In systems biology: 2,228
  • Year to date:
    • Site-wide: 42,680
  • Since beginning of last month:
    • Site-wide: 60,959

Integrative functional analysis uncovers metabolic differences between Candida species

systems biology more details view paper
  • Downloaded 228 times
  • Download rankings, all-time:
    • Site-wide: 113,648
    • In systems biology: 2,534
  • Year to date:
    • Site-wide: 24,113
  • Since beginning of last month:
    • Site-wide: 17,460

Analytical Performance of a Standardized Kit for Mass Spectrometry-based Measurements of Human Glycosaminoglycans

biochemistry more details view paper
  • Downloaded 204 times
  • Download rankings, all-time:
    • Site-wide: 119,604
    • In biochemistry: 3,557
  • Year to date:
    • Site-wide: 27,833
  • Since beginning of last month:
    • Site-wide: 87,442

Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast

systems biology more details view paper
  • Downloaded 200 times
  • Download rankings, all-time:
    • Site-wide: 120,707
    • In systems biology: 2,661
  • Year to date:
    • Site-wide: 50,368
  • Since beginning of last month:
    • Site-wide: 50,180

Integrated metabolic modeling, culturing and transcriptomics explains enhanced virulence of V. cholerae during co-infection with ETEC

systems biology more details view paper
  • Downloaded 188 times
  • Download rankings, all-time:
    • Site-wide: 123,551
    • In systems biology: 2,716
  • Year to date:
    • Site-wide: 118,650
  • Since beginning of last month:
    • Site-wide: 114,063

A Single Chromosome Strain of S. cerevisiae Exhibits Diminished Ethanol Metabolism and Tolerance.

systems biology more details view paper
  • Downloaded 186 times
  • Download rankings, all-time:
    • Site-wide: 124,126
    • In systems biology: 2,723
  • Year to date:
    • Site-wide: 110,236
  • Since beginning of last month:
    • Site-wide: 62,545

Multi-omics analysis reveals the impact of microbiota on host metabolism in hepatic steatosis

endocrinology more details view paper
  • Downloaded 165 times
  • Download rankings, all-time:
    • Site-wide: 128,815
    • In endocrinology: 128
  • Year to date:
    • Site-wide: 35,751
  • Since beginning of last month:
    • Site-wide: 7,134

Machine learning-based investigation of the cancer protein secretory pathway

systems biology more details view paper
  • Downloaded 140 times
  • Download rankings, all-time:
    • Site-wide: 134,481
    • In systems biology: 2,862
  • Year to date:
    • Site-wide: 115,201
  • Since beginning of last month:
    • Site-wide: 102,292

Combined Metabolic Activators Reduces Liver Fat in Nonalcoholic Fatty Liver Disease Patients

endocrinology more details view paper
  • Downloaded 139 times
  • Download rankings, all-time:
    • Site-wide: 134,710
    • In endocrinology: 151
  • Year to date:
    • Site-wide: 43,421
  • Since beginning of last month:
    • Site-wide: 17,489

Analysis of Normal Levels of Urine and Plasma Free Glycosaminoglycans in Adults

biochemistry more details view paper
  • Downloaded 76 times
  • Download rankings, all-time:
    • Site-wide: 145,896
    • In biochemistry: 4,400
  • Year to date:
    • Site-wide: 76,149
  • Since beginning of last month:
    • Site-wide: 112,556

Amino acid and nucleotide metabolism shape the selection of trophic levels in animals

ecology more details view paper
  • Downloaded 27 times
  • Download rankings, all-time:
    • Site-wide: 149,246
    • In ecology: 5,648
  • Year to date:
    • Site-wide: 134,017
  • Since beginning of last month:
    • Site-wide: 20,055

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