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Author: Jens Nielsen

Rankings

  • All-time downloads: 36,179 (rank: 4,065 )
  • Categories:
    • biochemistry: 134 (rank: 22,391 (tie) )
    • bioengineering: 1,686 (rank: 1,666 (tie) )
    • bioinformatics: 4,399 (rank: 2,709 (tie) )
    • cancer biology: 1,224 (rank: 5,841 (tie) )
    • epidemiology: 10,247 (rank: 1,230 (tie) )
    • infectious diseases: 2,781 (rank: 11,212 (tie) )
    • microbiology: 477 (rank: 27,702 (tie) )
    • molecular biology: 2,915 (rank: 1,221 (tie) )
    • pharmacology and therapeutics: 415 (rank: 467 (tie) )
    • physiology: 500 (rank: 2,791 (tie) )
    • systems biology: 11,401 (rank: 193 )

Downloads per author, site-wide

Preprints

Vaccine effectiveness after 1st and 2nd dose of the BNT162b2 mRNA Covid-19 Vaccine in long-term care facility residents and healthcare workers - a Danish cohort study

epidemiology more details view paper
  • Downloaded 10,247 times
  • Download rankings, all-time:
    • Site-wide: 773
    • In epidemiology: 110
  • Year to date:
    • Site-wide: 64
  • Since beginning of last month:
    • Site-wide: 9

The human secretome – the proteins secreted from human cells

molecular biology more details view paper
  • Downloaded 2,915 times
  • Download rankings, all-time:
    • Site-wide: 4,262
    • In molecular biology: 94
  • Year to date:
    • Site-wide: 10,076
  • Since beginning of last month:
    • Site-wide: 11,290

Combined metabolic cofactor supplementation accelerates recovery in mild-to-moderate COVID-19

infectious diseases more details view paper
  • Downloaded 2,781 times
  • Download rankings, all-time:
    • Site-wide: 4,546
    • In infectious diseases: 768
  • Year to date:
    • Site-wide: 468
  • Since beginning of last month:
    • Site-wide: 579

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

systems biology more details view paper
  • Downloaded 2,109 times
  • Download rankings, all-time:
    • Site-wide: 6,846
    • In systems biology: 122
  • Year to date:
    • Site-wide: 28,445
  • Since beginning of last month:
    • Site-wide: 30,544

Evolution from adherent to suspension – systems biology of HEK293 cell line development

systems biology more details view paper
  • Downloaded 2,048 times
  • Download rankings, all-time:
    • Site-wide: 7,134
    • In systems biology: 129
  • Year to date:
    • Site-wide: 3,679
  • Since beginning of last month:
    • Site-wide: 4,521

Predictive engineering and optimization of tryptophan metabolism in yeast through a combination of mechanistic and machine learning models

bioengineering more details view paper
  • Downloaded 1,686 times
  • Download rankings, all-time:
    • Site-wide: 9,581
    • In bioengineering: 158
  • Year to date:
    • Site-wide: 35,380
  • Since beginning of last month:
    • Site-wide: 39,925

Machine learning applied to predicting microorganism growth temperatures and enzyme catalytic optima

bioinformatics more details view paper
  • Downloaded 1,333 times
  • Download rankings, all-time:
    • Site-wide: 13,567
    • In bioinformatics: 1,653
  • Year to date:
    • Site-wide: 37,808
  • Since beginning of last month:
    • Site-wide: 38,694

Pan-cancer analysis of the metabolic reaction network

cancer biology more details view paper
  • Downloaded 1,224 times
  • Download rankings, all-time:
    • Site-wide: 15,467
    • In cancer biology: 336
  • Year to date:
    • Site-wide: 89,296
  • Since beginning of last month:
    • Site-wide: 79,539

iNetModels 2.0: an interactive visualization and database of multi-omics data

bioinformatics more details view paper
  • Downloaded 1,185 times
  • Download rankings, all-time:
    • Site-wide: 16,211
    • In bioinformatics: 1,958
  • Year to date:
    • Site-wide: 7,804
  • Since beginning of last month:
    • Site-wide: 23,865

RAVEN 2.0: a versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

systems biology more details view paper
  • Downloaded 1,150 times
  • Download rankings, all-time:
    • Site-wide: 16,960
    • In systems biology: 343
  • Year to date:
    • Site-wide: 51,182
  • Since beginning of last month:
    • Site-wide: 62,128

Genome-scale model of Rhodotorula toruloides metabolism

systems biology more details view paper
  • Downloaded 982 times
  • Download rankings, all-time:
    • Site-wide: 21,322
    • In systems biology: 443
  • Year to date:
    • Site-wide: 40,399
  • Since beginning of last month:
    • Site-wide: 62,552

Benchmarking accuracy and precision of intensity-based absolute quantification of protein abundances in Saccharomyces cerevisiae

bioinformatics more details view paper
  • Downloaded 783 times
  • Download rankings, all-time:
    • Site-wide: 29,413
    • In bioinformatics: 3,378
  • Year to date:
    • Site-wide: 9,591
  • Since beginning of last month:
    • Site-wide: 16,943

Addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq

bioinformatics more details view paper
  • Downloaded 695 times
  • Download rankings, all-time:
    • Site-wide: 34,746
    • In bioinformatics: 3,888
  • Year to date:
    • Site-wide: 40,620
  • Since beginning of last month:
    • Site-wide: 54,954

Deciphering the tissue specificity of the protein secretory pathway in humans

systems biology more details view paper
  • Downloaded 626 times
  • Download rankings, all-time:
    • Site-wide: 39,869
    • In systems biology: 911
  • Year to date:
    • Site-wide: 110,859
  • Since beginning of last month:
    • Site-wide: 90,133

Stress-Induced Expression is Enriched for Evolutionarily Young Genes in Diverse Budding Yeasts

systems biology more details view paper
  • Downloaded 578 times
  • Download rankings, all-time:
    • Site-wide: 44,024
    • In systems biology: 1,013
  • Year to date:
    • Site-wide: 105,797
  • Since beginning of last month:
    • Site-wide: 123,034

Discovery of functional alternatively spliced PKM transcripts in human cancers

systems biology more details view paper
  • Downloaded 573 times
  • Download rankings, all-time:
    • Site-wide: 44,442
    • In systems biology: 1,029
  • Year to date:
    • Site-wide: 41,398
  • Since beginning of last month:
    • Site-wide: 42,205

SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework

systems biology more details view paper
  • Downloaded 542 times
  • Download rankings, all-time:
    • Site-wide: 47,682
    • In systems biology: 1,102
  • Year to date:
    • Site-wide: 91,664
  • Since beginning of last month:
    • Site-wide: 102,665

Fundamental Constraints In Synchronous Muscle Limit Superfast Motor Control In Vertebrates

physiology more details view paper
  • Downloaded 500 times
  • Download rankings, all-time:
    • Site-wide: 52,429
    • In physiology: 297
  • Year to date:
    • Site-wide: 75,510
  • Since beginning of last month:
    • Site-wide: 79,175

Proteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production

microbiology more details view paper
  • Downloaded 477 times
  • Download rankings, all-time:
    • Site-wide: 55,272
    • In microbiology: 3,567
  • Year to date:
    • Site-wide: 33,289
  • Since beginning of last month:
    • Site-wide: 13,171

Reconstruction and Analysis of a Kluyveromyces marxianus Genome-scale Metabolic Model

systems biology more details view paper
  • Downloaded 458 times
  • Download rankings, all-time:
    • Site-wide: 57,791
    • In systems biology: 1,382
  • Year to date:
    • Site-wide: 115,510
  • Since beginning of last month:
    • Site-wide: 114,833

Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments

systems biology more details view paper
  • Downloaded 427 times
  • Download rankings, all-time:
    • Site-wide: 62,056
    • In systems biology: 1,493
  • Year to date:
    • Site-wide: 16,345
  • Since beginning of last month:
    • Site-wide: 12,255

Informing Pharmacokinetic Models with Physiological Data: Oral Population Modeling of L-Serine in Humans

pharmacology and therapeutics more details view paper
  • Downloaded 415 times
  • Download rankings, all-time:
    • Site-wide: 63,909
    • In pharmacology and therapeutics: 58
  • Year to date:
    • Site-wide: 49,588
  • Since beginning of last month:
    • Site-wide: 46,206

RMetD2: a tool for integration of relative transcriptomics data into Genome-scale metabolic models

bioinformatics more details view paper
  • Downloaded 403 times
  • Download rankings, all-time:
    • Site-wide: 65,852
    • In bioinformatics: 6,398
  • Year to date:
    • Site-wide: 61,607
  • Since beginning of last month:
    • Site-wide: 51,866

Saccharomyces cerevisiae displays a stable transcription start site landscape in multiple conditions

systems biology more details view paper
  • Downloaded 371 times
  • Download rankings, all-time:
    • Site-wide: 71,158
    • In systems biology: 1,716
  • Year to date:
    • Site-wide: 121,429
  • Since beginning of last month:
    • Site-wide: 122,254

The Reactobiome Unravels a New Paradigm in Human Gut Microbiome Metabolism

systems biology more details view paper
  • Downloaded 311 times
  • Download rankings, all-time:
    • Site-wide: 82,410
    • In systems biology: 1,972
  • Year to date:
    • Site-wide: 5,349
  • Since beginning of last month:
    • Site-wide: 14,164

A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism

systems biology more details view paper
  • Downloaded 264 times
  • Download rankings, all-time:
    • Site-wide: 92,435
    • In systems biology: 2,171
  • Year to date:
    • Site-wide: 30,273
  • Since beginning of last month:
    • Site-wide: 16,986

Transcriptome analysis of EPO and GFP HEK293 Cell-lines Reveal Shifts in Energy and ER Capacity Support Improved Erythropoietin Production in HEK293F Cells

systems biology more details view paper
  • Downloaded 214 times
  • Download rankings, all-time:
    • Site-wide: 103,321
    • In systems biology: 2,387
  • Year to date:
    • Site-wide: 39,937
  • Since beginning of last month:
    • Site-wide: 26,044

A Single Chromosome Strain of S. cerevisiae Exhibits Diminished Ethanol Metabolism and Tolerance.

systems biology more details view paper
  • Downloaded 170 times
  • Download rankings, all-time:
    • Site-wide: 112,896
    • In systems biology: 2,557
  • Year to date:
    • Site-wide: 77,822
  • Since beginning of last month:
    • Site-wide: 67,710

Integrated metabolic modeling, culturing and transcriptomics explains enhanced virulence of V. cholerae during co-infection with ETEC

systems biology more details view paper
  • Downloaded 168 times
  • Download rankings, all-time:
    • Site-wide: 113,406
    • In systems biology: 2,565
  • Year to date:
    • Site-wide: 104,058
  • Since beginning of last month:
    • Site-wide: 110,565

Quantifying absolute gene expression profiles reveals distinct regulation of central carbon metabolism genes in yeast

systems biology more details view paper
  • Downloaded 165 times
  • Download rankings, all-time:
    • Site-wide: 113,872
    • In systems biology: 2,576
  • Year to date:
    • Site-wide: 28,729
  • Since beginning of last month:
    • Site-wide: 34,810

Analytical Performance of a Standardized Kit for Mass Spectrometry-based Measurements of Human Glycosaminoglycans

biochemistry more details view paper
  • Downloaded 134 times
  • Download rankings, all-time:
    • Site-wide: 120,285
    • In biochemistry: 3,605
  • Year to date:
    • Site-wide: 16,919
  • Since beginning of last month:
    • Site-wide: 21,244

Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0

systems biology more details view paper
  • Downloaded 124 times
  • Download rankings, all-time:
    • Site-wide: 122,183
    • In systems biology: 2,698
  • Year to date:
    • Site-wide: 18,655
  • Since beginning of last month:
    • Site-wide: 4,672

Machine learning-based investigation of the cancer protein secretory pathway

systems biology more details view paper
  • Downloaded 121 times
  • Download rankings, all-time:
    • Site-wide: 122,622
    • In systems biology: 2,704
  • Year to date:
    • Site-wide: 94,749
  • Since beginning of last month:
    • Site-wide: 85,790

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