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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,519 bioRxiv papers from 243,473 authors.

Author: Aviv Regev

Rankings

  • All-time downloads: 104,975 (rank: 50 out of 243,473)
  • Categories:
    • bioengineering: 5,994 (rank: 28 (tie) out of 5,437)
    • bioinformatics: 17,514 (rank: 82 out of 21,552)
    • cancer biology: 1,444 (rank: 1,244 out of 13,599)
    • cell biology: 12,928 (rank: 11 (tie) out of 15,243)
    • evolutionary biology: 653 (rank: 4,543 (tie) out of 13,528)
    • genomics: 39,723 (rank: 116 out of 28,107)
    • immunology: 4,894 (rank: 83 out of 9,701)
    • molecular biology: 7,974 (rank: 32 out of 10,300)
    • neuroscience: 10,320 (rank: 246 (tie) out of 37,452)
    • systems biology: 3,531 (rank: 230 out of 7,239)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,515 times
  • Download rankings, all-time:
    • Site-wide: 68 out of 52,519
    • In cell biology: 2 out of 2,472
  • Year to date:
    • Site-wide: 4,664 out of 52,519
  • Since beginning of last month:
    • Site-wide: 5,785 out of 52,519

Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming.

bioinformatics more details view paper
  • Downloaded 9,900 times
  • Download rankings, all-time:
    • Site-wide: 92 out of 52,519
    • In bioinformatics: 16 out of 5,498
  • Year to date:
    • Site-wide: 231 out of 52,519
  • Since beginning of last month:
    • Site-wide: 984 out of 52,519

DroNc-Seq: Deciphering cell types in human archived brain tissues by massively-parallel single nucleus RNA-seq

genomics more details view paper
  • Downloaded 6,335 times
  • Download rankings, all-time:
    • Site-wide: 207 out of 52,519
    • In genomics: 61 out of 3,756
  • Year to date:
    • Site-wide: 8,303 out of 52,519
  • Since beginning of last month:
    • Site-wide: 7,782 out of 52,519

DNA microscopy: Optics-free spatio-genetic imaging by a stand-alone chemical reaction

bioengineering more details view paper
  • Downloaded 5,994 times
  • Download rankings, all-time:
    • Site-wide: 227 out of 52,519
    • In bioengineering: 4 out of 976
  • Year to date:
    • Site-wide: 200 out of 52,519
  • Since beginning of last month:
    • Site-wide: 694 out of 52,519

STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

bioinformatics more details view paper
  • Downloaded 5,345 times
  • Download rankings, all-time:
    • Site-wide: 297 out of 52,519
    • In bioinformatics: 59 out of 5,498
  • Year to date:
    • Site-wide: 848 out of 52,519
  • Since beginning of last month:
    • Site-wide: 1,292 out of 52,519

Deciphering eukaryotic cis-regulatory logic with 100 million random promoters

genomics more details view paper
  • Downloaded 4,650 times
  • Download rankings, all-time:
    • Site-wide: 379 out of 52,519
    • In genomics: 102 out of 3,756
  • Year to date:
    • Site-wide: 2,101 out of 52,519
  • Since beginning of last month:
    • Site-wide: 5,216 out of 52,519

Genetic determinants of co-accessible chromatin regions in T cell activation across humans

genomics more details view paper
  • Downloaded 4,475 times
  • Download rankings, all-time:
    • Site-wide: 406 out of 52,519
    • In genomics: 110 out of 3,756
  • Year to date:
    • Site-wide: 10,414 out of 52,519
  • Since beginning of last month:
    • Site-wide: 13,683 out of 52,519

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 4,288 times
  • Download rankings, all-time:
    • Site-wide: 447 out of 52,519
    • In genomics: 123 out of 3,756
  • Year to date:
    • Site-wide: 39 out of 52,519
  • Since beginning of last month:
    • Site-wide: 1 out of 52,519

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

molecular biology more details view paper
  • Downloaded 4,275 times
  • Download rankings, all-time:
    • Site-wide: 454 out of 52,519
    • In molecular biology: 9 out of 1,586
  • Year to date:
    • Site-wide: 18,520 out of 52,519
  • Since beginning of last month:
    • Site-wide: 10,949 out of 52,519

High-resolution interrogation of functional elements in the noncoding genome

molecular biology more details view paper
  • Downloaded 3,699 times
  • Download rankings, all-time:
    • Site-wide: 607 out of 52,519
    • In molecular biology: 11 out of 1,586
  • Year to date:
    • Site-wide: 32,829 out of 52,519
  • Since beginning of last month:
    • Site-wide: 27,149 out of 52,519

Div-Seq: A single nucleus RNA-Seq method reveals dynamics of rare adult newborn neurons in the CNS

neuroscience more details view paper
  • Downloaded 3,463 times
  • Download rankings, all-time:
    • Site-wide: 679 out of 52,519
    • In neuroscience: 81 out of 9,207
  • Year to date:
    • Site-wide: 23,197 out of 52,519
  • Since beginning of last month:
    • Site-wide: 20,404 out of 52,519

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

genomics more details view paper
  • Downloaded 3,443 times
  • Download rankings, all-time:
    • Site-wide: 690 out of 52,519
    • In genomics: 183 out of 3,756
  • Year to date:
    • Site-wide: 153 out of 52,519
  • Since beginning of last month:
    • Site-wide: 190 out of 52,519

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper
  • Downloaded 3,231 times
  • Download rankings, all-time:
    • Site-wide: 778 out of 52,519
    • In genomics: 204 out of 3,756
  • Year to date:
    • Site-wide: 64 out of 52,519
  • Since beginning of last month:
    • Site-wide: 7 out of 52,519

High-density spatial transcriptomics arrays for in situ tissue profiling

genomics more details view paper
  • Downloaded 3,084 times
  • Download rankings, all-time:
    • Site-wide: 841 out of 52,519
    • In genomics: 221 out of 3,756
  • Year to date:
    • Site-wide: 74 out of 52,519
  • Since beginning of last month:
    • Site-wide: 148 out of 52,519

Composite measurements and molecular compressed sensing for highly efficient transcriptomics

systems biology more details view paper
  • Downloaded 2,994 times
  • Download rankings, all-time:
    • Site-wide: 896 out of 52,519
    • In systems biology: 18 out of 1,534
  • Year to date:
    • Site-wide: 20,216 out of 52,519
  • Since beginning of last month:
    • Site-wide: 16,867 out of 52,519

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

genomics more details view paper
  • Downloaded 2,565 times
  • Download rankings, all-time:
    • Site-wide: 1,180 out of 52,519
    • In genomics: 280 out of 3,756
  • Year to date:
    • Site-wide: 274 out of 52,519
  • Since beginning of last month:
    • Site-wide: 389 out of 52,519

A single cell-based atlas of human microglial states reveals associations with neurological disorders and histopathological features of the aging brain

neuroscience more details view paper
  • Downloaded 2,406 times
  • Download rankings, all-time:
    • Site-wide: 1,328 out of 52,519
    • In neuroscience: 184 out of 9,207
  • Year to date:
    • Site-wide: 643 out of 52,519
  • Since beginning of last month:
    • Site-wide: 1,126 out of 52,519

Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

neuroscience more details view paper
  • Downloaded 2,177 times
  • Download rankings, all-time:
    • Site-wide: 1,595 out of 52,519
    • In neuroscience: 219 out of 9,207
  • Year to date:
    • Site-wide: 429 out of 52,519
  • Since beginning of last month:
    • Site-wide: 605 out of 52,519

Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

immunology more details view paper
  • Downloaded 1,987 times
  • Download rankings, all-time:
    • Site-wide: 1,866 out of 52,519
    • In immunology: 19 out of 1,212
  • Year to date:
    • Site-wide: 17,939 out of 52,519
  • Since beginning of last month:
    • Site-wide: 17,401 out of 52,519

Landscape of X chromosome inactivation across human tissues

genomics more details view paper
  • Downloaded 1,802 times
  • Download rankings, all-time:
    • Site-wide: 2,197 out of 52,519
    • In genomics: 472 out of 3,756
  • Year to date:
    • Site-wide: 29,136 out of 52,519
  • Since beginning of last month:
    • Site-wide: 25,003 out of 52,519

T helper cells modulate intestinal stem cell renewal and differentiation

immunology more details view paper
  • Downloaded 1,775 times
  • Download rankings, all-time:
    • Site-wide: 2,254 out of 52,519
    • In immunology: 25 out of 1,212
  • Year to date:
    • Site-wide: 6,211 out of 52,519
  • Since beginning of last month:
    • Site-wide: 10,630 out of 52,519

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

neuroscience more details view paper
  • Downloaded 1,674 times
  • Download rankings, all-time:
    • Site-wide: 2,500 out of 52,519
    • In neuroscience: 368 out of 9,207
  • Year to date:
    • Site-wide: 1,143 out of 52,519
  • Since beginning of last month:
    • Site-wide: 4,988 out of 52,519

A quantitative model for characterizing the evolutionary history of mammalian gene expression

genomics more details view paper
  • Downloaded 1,621 times
  • Download rankings, all-time:
    • Site-wide: 2,637 out of 52,519
    • In genomics: 541 out of 3,756
  • Year to date:
    • Site-wide: 9,538 out of 52,519
  • Since beginning of last month:
    • Site-wide: 9,841 out of 52,519

GeNets: A unified web platform for network-based analyses of genomic data

genomics more details view paper
  • Downloaded 1,449 times
  • Download rankings, all-time:
    • Site-wide: 3,144 out of 52,519
    • In genomics: 617 out of 3,756
  • Year to date:
    • Site-wide: 34,470 out of 52,519
  • Since beginning of last month:
    • Site-wide: 26,443 out of 52,519

A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia demonstrates cancer-crosstalk with stroma to impair normal tissue function

cell biology more details view paper
  • Downloaded 1,413 times
  • Download rankings, all-time:
    • Site-wide: 3,287 out of 52,519
    • In cell biology: 81 out of 2,472
  • Year to date:
    • Site-wide: 328 out of 52,519
  • Since beginning of last month:
    • Site-wide: 401 out of 52,519

Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

immunology more details view paper
  • Downloaded 1,132 times
  • Download rankings, all-time:
    • Site-wide: 4,697 out of 52,519
    • In immunology: 46 out of 1,212
  • Year to date:
    • Site-wide: 1,696 out of 52,519
  • Since beginning of last month:
    • Site-wide: 2,438 out of 52,519

BROCKMAN: Deciphering variance in epigenomic regulators by k-mer factorization

genomics more details view paper
  • Downloaded 1,090 times
  • Download rankings, all-time:
    • Site-wide: 4,986 out of 52,519
    • In genomics: 869 out of 3,756
  • Year to date:
    • Site-wide: 29,543 out of 52,519
  • Since beginning of last month:
    • Site-wide: 22,770 out of 52,519

Longitudinal single cell profiling of regulatory T cells identifies IL-33 as a driver of tumor immunosuppression

cancer biology more details view paper
  • Downloaded 1,055 times
  • Download rankings, all-time:
    • Site-wide: 5,253 out of 52,519
    • In cancer biology: 136 out of 1,676
  • Year to date:
    • Site-wide: 573 out of 52,519
  • Since beginning of last month:
    • Site-wide: 2,957 out of 52,519

scSVA: an interactive tool for big data visualization and exploration in single-cell omics

bioinformatics more details view paper
  • Downloaded 1,019 times
  • Download rankings, all-time:
    • Site-wide: 5,571 out of 52,519
    • In bioinformatics: 1,065 out of 5,498
  • Year to date:
    • Site-wide: 617 out of 52,519
  • Since beginning of last month:
    • Site-wide: 2,752 out of 52,519

Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics

genomics more details view paper
  • Downloaded 971 times
  • Download rankings, all-time:
    • Site-wide: 6,014 out of 52,519
    • In genomics: 1,007 out of 3,756
  • Year to date:
    • Site-wide: 684 out of 52,519
  • Since beginning of last month:
    • Site-wide: 2,185 out of 52,519

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

genomics more details view paper
  • Downloaded 719 times
  • Download rankings, all-time:
    • Site-wide: 9,518 out of 52,519
    • In genomics: 1,408 out of 3,756
  • Year to date:
    • Site-wide: 35,423 out of 52,519
  • Since beginning of last month:
    • Site-wide: 38,375 out of 52,519

Combinatorial prediction of gene-marker panels from single-cell transcriptomic data.

bioinformatics more details view paper
  • Downloaded 693 times
  • Download rankings, all-time:
    • Site-wide: 10,019 out of 52,519
    • In bioinformatics: 1,737 out of 5,498
  • Year to date:
    • Site-wide: 1,284 out of 52,519
  • Since beginning of last month:
    • Site-wide: 143 out of 52,519

Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs

evolutionary biology more details view paper
  • Downloaded 653 times
  • Download rankings, all-time:
    • Site-wide: 10,890 out of 52,519
    • In evolutionary biology: 809 out of 3,671
  • Year to date:
    • Site-wide: 42,866 out of 52,519
  • Since beginning of last month:
    • Site-wide: 40,924 out of 52,519

A cellular and spatial map of the choroid plexus across brain ventricles and ages

neuroscience more details view paper
  • Downloaded 600 times
  • Download rankings, all-time:
    • Site-wide: 12,202 out of 52,519
    • In neuroscience: 1,965 out of 9,207
  • Year to date:
    • Site-wide: 1,628 out of 52,519
  • Since beginning of last month:
    • Site-wide: 184 out of 52,519

Conservation and divergence in modules of the transcriptional programs of the human and mouse immune systems

bioinformatics more details view paper
  • Downloaded 557 times
  • Download rankings, all-time:
    • Site-wide: 13,401 out of 52,519
    • In bioinformatics: 2,187 out of 5,498
  • Year to date:
    • Site-wide: 18,485 out of 52,519
  • Since beginning of last month:
    • Site-wide: 19,137 out of 52,519

A molecular network of the aging brain implicates INPPL1 and PLXNB1 in Alzheimer's disease

systems biology more details view paper
  • Downloaded 537 times
  • Download rankings, all-time:
    • Site-wide: 14,080 out of 52,519
    • In systems biology: 429 out of 1,534
  • Year to date:
    • Site-wide: 24,567 out of 52,519
  • Since beginning of last month:
    • Site-wide: 25,231 out of 52,519

Regulatory network controlling tumor-promoting inflammation in human cancers

cancer biology more details view paper
  • Downloaded 389 times
  • Download rankings, all-time:
    • Site-wide: 20,434 out of 52,519
    • In cancer biology: 598 out of 1,676
  • Year to date:
    • Site-wide: 19,000 out of 52,519
  • Since beginning of last month:
    • Site-wide: 18,759 out of 52,519

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