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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 73,741 bioRxiv papers from 320,833 authors.

Author: Aviv Regev

Rankings

  • All-time downloads: 164,975 (rank: 58 out of 320,833)
  • Categories:
    • bioengineering: 8,666 (rank: 20 (tie) out of 8,473)
    • bioinformatics: 25,267 (rank: 77 out of 27,792)
    • cancer biology: 7,508 (rank: 157 out of 21,183)
    • cell biology: 14,016 (rank: 20 out of 22,637)
    • developmental biology: 2,701 (rank: 287 (tie) out of 12,371)
    • evolutionary biology: 700 (rank: 5,896 (tie) out of 17,029)
    • genetics: 600 (rank: 16,110 (tie) out of 31,577)
    • genomics: 69,775 (rank: 98 out of 35,770)
    • immunology: 6,899 (rank: 76 out of 15,558)
    • molecular biology: 9,603 (rank: 71 out of 15,792)
    • neuroscience: 16,095 (rank: 190 out of 54,238)
    • systems biology: 3,145 (rank: 518 (tie) out of 9,670)

Downloads per author, site-wide

Preprints

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

cancer biology more details view paper

No bioRxiv download data for this paper yet.

CELL ATLAS OF THE HUMAN FOVEA AND PERIPHERAL RETINA

neuroscience more details view paper

No bioRxiv download data for this paper yet.

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,890 times
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    • Site-wide: 100 out of 73,741
    • In cell biology: 3 out of 3,640
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    • Site-wide: 10,570 out of 73,741
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    • Site-wide: 10,570 out of 73,741

Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming.

bioinformatics more details view paper
  • Downloaded 10,991 times
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    • In bioinformatics: 19 out of 7,172
  • Year to date:
    • Site-wide: 2,748 out of 73,741
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    • Site-wide: 2,748 out of 73,741

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 9,799 times
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    • Site-wide: 154 out of 73,741
    • In genomics: 41 out of 4,889
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    • Site-wide: 194 out of 73,741
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    • Site-wide: 194 out of 73,741

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper
  • Downloaded 9,329 times
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    • In genomics: 46 out of 4,889
  • Year to date:
    • Site-wide: 123 out of 73,741
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    • Site-wide: 123 out of 73,741

DNA microscopy: Optics-free spatio-genetic imaging by a stand-alone chemical reaction

bioengineering more details view paper
  • Downloaded 8,666 times
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    • In bioengineering: 3 out of 1,534
  • Year to date:
    • Site-wide: 1,786 out of 73,741
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    • Site-wide: 1,786 out of 73,741

DroNc-Seq: Deciphering cell types in human archived brain tissues by massively-parallel single nucleus RNA-seq

genomics more details view paper
  • Downloaded 6,642 times
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    • In genomics: 77 out of 4,889
  • Year to date:
    • Site-wide: 13,217 out of 73,741
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    • Site-wide: 13,217 out of 73,741

STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

bioinformatics more details view paper
  • Downloaded 6,333 times
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    • In bioinformatics: 55 out of 7,172
  • Year to date:
    • Site-wide: 4,241 out of 73,741
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    • Site-wide: 4,241 out of 73,741

High-density spatial transcriptomics arrays for in situ tissue profiling

genomics more details view paper
  • Downloaded 5,795 times
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    • In genomics: 95 out of 4,889
  • Year to date:
    • Site-wide: 915 out of 73,741
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    • Site-wide: 915 out of 73,741

Deciphering eukaryotic cis-regulatory logic with 100 million random promoters

genomics more details view paper
  • Downloaded 5,281 times
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    • In genomics: 113 out of 4,889
  • Year to date:
    • Site-wide: 4,900 out of 73,741
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    • Site-wide: 4,900 out of 73,741

Genetic determinants of co-accessible chromatin regions in T cell activation across humans

genomics more details view paper
  • Downloaded 4,696 times
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    • In genomics: 138 out of 4,889
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    • Site-wide: 14,359 out of 73,741
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    • Site-wide: 14,359 out of 73,741

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

molecular biology more details view paper
  • Downloaded 4,508 times
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    • In molecular biology: 15 out of 2,402
  • Year to date:
    • Site-wide: 15,002 out of 73,741
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    • Site-wide: 15,002 out of 73,741

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

genomics more details view paper
  • Downloaded 4,232 times
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    • Site-wide: 699 out of 73,741
    • In genomics: 169 out of 4,889
  • Year to date:
    • Site-wide: None out of 73,741
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A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

genomics more details view paper
  • Downloaded 3,975 times
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    • In genomics: 192 out of 4,889
  • Year to date:
    • Site-wide: 160 out of 73,741
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    • Site-wide: 160 out of 73,741

High-resolution interrogation of functional elements in the noncoding genome

molecular biology more details view paper
  • Downloaded 3,804 times
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    • In molecular biology: 22 out of 2,402
  • Year to date:
    • Site-wide: 39,270 out of 73,741
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    • Site-wide: 39,270 out of 73,741

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

genomics more details view paper
  • Downloaded 3,610 times
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    • Site-wide: 951 out of 73,741
    • In genomics: 232 out of 4,889
  • Year to date:
    • Site-wide: 5,992 out of 73,741
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    • Site-wide: 5,992 out of 73,741

Div-Seq: A single nucleus RNA-Seq method reveals dynamics of rare adult newborn neurons in the CNS

neuroscience more details view paper
  • Downloaded 3,561 times
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    • In neuroscience: 129 out of 13,252
  • Year to date:
    • Site-wide: 50,484 out of 73,741
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    • Site-wide: 50,484 out of 73,741

The enteric nervous system of the human and mouse colon at a single-cell resolution

genomics more details view paper
  • Downloaded 3,497 times
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    • Site-wide: 1,004 out of 73,741
    • In genomics: 244 out of 4,889
  • Year to date:
    • Site-wide: 247 out of 73,741
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    • Site-wide: 247 out of 73,741

Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

neuroscience more details view paper
  • Downloaded 3,464 times
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    • Site-wide: 1,020 out of 73,741
    • In neuroscience: 138 out of 13,252
  • Year to date:
    • Site-wide: 3,479 out of 73,741
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    • Site-wide: 3,479 out of 73,741

A single cell-based atlas of human microglial states reveals associations with neurological disorders and histopathological features of the aging brain

neuroscience more details view paper
  • Downloaded 3,318 times
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    • In neuroscience: 155 out of 13,252
  • Year to date:
    • Site-wide: 5,310 out of 73,741
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    • Site-wide: 5,310 out of 73,741

In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with Autism risk genes

genomics more details view paper
  • Downloaded 3,227 times
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    • Site-wide: 1,171 out of 73,741
    • In genomics: 269 out of 4,889
  • Year to date:
    • Site-wide: 404 out of 73,741
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    • Site-wide: 404 out of 73,741

Composite measurements and molecular compressed sensing for highly efficient transcriptomics

systems biology more details view paper
  • Downloaded 3,145 times
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    • Site-wide: 1,222 out of 73,741
    • In systems biology: 29 out of 2,016
  • Year to date:
    • Site-wide: 49,983 out of 73,741
  • Since beginning of last month:
    • Site-wide: 49,983 out of 73,741

Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces

bioinformatics more details view paper
  • Downloaded 3,129 times
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    • Site-wide: 1,239 out of 73,741
    • In bioinformatics: 244 out of 7,172
  • Year to date:
    • Site-wide: 367 out of 73,741
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    • Site-wide: 367 out of 73,741

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 2,701 times
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    • Site-wide: 1,591 out of 73,741
    • In developmental biology: 20 out of 2,212
  • Year to date:
    • Site-wide: 2,098 out of 73,741
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    • Site-wide: 2,098 out of 73,741

Pan-cancer single cell RNA-seq uncovers recurring programs of cellular heterogeneity

cancer biology more details view paper
  • Downloaded 2,402 times
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    • In cancer biology: 53 out of 2,525
  • Year to date:
    • Site-wide: 1,751 out of 73,741
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    • Site-wide: 1,751 out of 73,741

Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

immunology more details view paper
  • Downloaded 2,172 times
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    • In immunology: 37 out of 1,925
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    • Site-wide: 10,315 out of 73,741
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    • Site-wide: 10,315 out of 73,741

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

neuroscience more details view paper
  • Downloaded 2,141 times
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    • Site-wide: 2,425 out of 73,741
    • In neuroscience: 362 out of 13,252
  • Year to date:
    • Site-wide: 8,629 out of 73,741
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    • Site-wide: 8,629 out of 73,741

T helper cells modulate intestinal stem cell renewal and differentiation

immunology more details view paper
  • Downloaded 2,053 times
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    • Site-wide: 2,613 out of 73,741
    • In immunology: 44 out of 1,925
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    • Site-wide: 16,078 out of 73,741
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    • Site-wide: 16,078 out of 73,741

Landscape of X chromosome inactivation across human tissues

genomics more details view paper
  • Downloaded 1,876 times
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    • Site-wide: 3,042 out of 73,741
    • In genomics: 597 out of 4,889
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A cellular and spatial map of the choroid plexus across brain ventricles and ages

neuroscience more details view paper
  • Downloaded 1,844 times
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    • In neuroscience: 480 out of 13,252
  • Year to date:
    • Site-wide: 2,280 out of 73,741
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    • Site-wide: 2,280 out of 73,741

Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

immunology more details view paper
  • Downloaded 1,797 times
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    • In immunology: 51 out of 1,925
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    • Site-wide: 2,203 out of 73,741
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    • Site-wide: 2,203 out of 73,741

Single-cell profiles of retinal neurons differing in resilience to injury reveal neuroprotective genes

neuroscience more details view paper
  • Downloaded 1,767 times
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    • In neuroscience: 522 out of 13,252
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    • Site-wide: 2,431 out of 73,741
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    • Site-wide: 2,431 out of 73,741

A quantitative model for characterizing the evolutionary history of mammalian gene expression

genomics more details view paper
  • Downloaded 1,763 times
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    • In genomics: 646 out of 4,889
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Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics

genomics more details view paper
  • Downloaded 1,618 times
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Longitudinal single cell profiling of regulatory T cells identifies IL-33 as a driver of tumor immunosuppression

cancer biology more details view paper
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    • Site-wide: 12,806 out of 73,741

Combinatorial prediction of marker panels from single-cell transcriptomic data

bioinformatics more details view paper
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    • Site-wide: 4,073 out of 73,741
    • In bioinformatics: 803 out of 7,172
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GeNets: A unified web platform for network-based analyses of genomic data

genomics more details view paper
  • Downloaded 1,525 times
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    • In genomics: 776 out of 4,889
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Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper
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    • In cell biology: 153 out of 3,640
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    • Site-wide: 3,408 out of 73,741

scSVA: an interactive tool for big data visualization and exploration in single-cell omics

bioinformatics more details view paper
  • Downloaded 1,334 times
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    • In bioinformatics: 1,021 out of 7,172
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    • Site-wide: 11,850 out of 73,741

Compressed sensing for imaging transcriptomics

molecular biology more details view paper
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    • In molecular biology: 179 out of 2,402
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    • Site-wide: 3,409 out of 73,741

BROCKMAN: Deciphering variance in epigenomic regulators by k-mer factorization

genomics more details view paper
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    • In genomics: 1,068 out of 4,889
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Acquired FGFR and FGF alterations confer resistance to estrogen receptor (ER) targeted therapy in ER+ metastatic breast cancer

cancer biology more details view paper
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Multiplexed single-cell profiling of post-perturbation transcriptional responses to define cancer vulnerabilities and therapeutic mechanism of action

cancer biology more details view paper
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    • Site-wide: 1,719 out of 73,741

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

genomics more details view paper
  • Downloaded 830 times
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    • Site-wide: 11,811 out of 73,741
    • In genomics: 1,665 out of 4,889
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Opposing immune and genetic forces shape oncogenic programs in synovial sarcoma

cancer biology more details view paper
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Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

bioinformatics more details view paper
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    • In bioinformatics: 2,152 out of 7,172
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Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs

evolutionary biology more details view paper
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Conservation and divergence in modules of the transcriptional programs of the human and mouse immune systems

bioinformatics more details view paper
  • Downloaded 684 times
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    • In bioinformatics: 2,440 out of 7,172
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Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

genetics more details view paper
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Shuffle-Seq: En masse combinatorial encoding for n-way genetic interaction screens

genomics more details view paper
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Regulatory network controlling tumor-promoting inflammation in human cancers

cancer biology more details view paper
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Single-nucleus RNA-Seq reveals a new type of brown adipocyte regulating thermogenesis

cell biology more details view paper
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An endogenous glucocorticoid-cytokine signaling circuit promotes CD8+ T cell dysfunction in the tumor microenvironment

immunology more details view paper
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MAUDE: Inferring expression changes in sorting-based CRISPR screens

bioinformatics more details view paper
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Metabolic and Epigenomic Regulation of Th17/Treg Balance by the Polyamine Pathway

immunology more details view paper
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In Silico Modeling of Metabolic State in Single Th17 Cells Reveals Novel Regulators of Inflammation and Autoimmunity

genomics more details view paper
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Cell Atlas of Aqueous Humor Outflow Pathways in Eyes of Humans and Four Model Species Provides Insights into Glaucoma Pathogenesis

cell biology more details view paper
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