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Author: Aviv Regev

Rankings

  • All-time downloads: 306,442 (rank: 69 )
  • Categories:
    • bioengineering: 10,188 (rank: 51 )
    • bioinformatics: 31,538 (rank: 84 )
    • cancer biology: 17,812 (rank: 58 )
    • cell biology: 17,269 (rank: 17 )
    • developmental biology: 8,439 (rank: 75 )
    • epidemiology: 3,768 (rank: 2,798 (tie) )
    • evolutionary biology: 797 (rank: 8,121 (tie) )
    • gastroenterology: 430 (rank: 654 (tie) )
    • genetic and genomic medicine: 2,130 (rank: 548 (tie) )
    • genetics: 1,193 (rank: 13,405 (tie) )
    • genomics: 133,495 (rank: 7 )
    • immunology: 11,038 (rank: 567 )
    • molecular biology: 27,595 (rank: 13 )
    • neuroscience: 35,679 (rank: 85 )
    • systems biology: 5,071 (rank: 624 )

Downloads per author, site-wide

Preprints

A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis-regulatory DNA sequences

genomics more details view paper

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LAMP-Seq: Population-Scale COVID-19 Diagnostics Using Combinatorial Barcoding

molecular biology more details view paper
  • Downloaded 16,725 times
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    • Site-wide: 390
    • In molecular biology: 6
  • Year to date:
    • Site-wide: 794
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    • Site-wide: 794

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper
  • Downloaded 13,792 times
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    • Site-wide: 471
    • In genomics: 29
  • Year to date:
    • Site-wide: 1,430
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    • Site-wide: 1,430

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 12,553 times
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    • Site-wide: 542
    • In cell biology: 4
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    • Site-wide: 19,154
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    • Site-wide: 19,154

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 12,442 times
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    • Site-wide: 547
    • In genomics: 40
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    • Site-wide: 5,253
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Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming.

bioinformatics more details view paper
  • Downloaded 11,711 times
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    • Site-wide: 603
    • In bioinformatics: 24
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    • Site-wide: 10,711
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DNA microscopy: Optics-free spatio-genetic imaging by a stand-alone chemical reaction

bioengineering more details view paper
  • Downloaded 9,273 times
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    • Site-wide: 822
    • In bioengineering: 7
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    • Site-wide: 38,621
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Chromatin potential identified by shared single cell profiling of RNA and chromatin

genomics more details view paper
  • Downloaded 8,486 times
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    • Site-wide: 929
    • In genomics: 81
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    • Site-wide: 1,090
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Expansion Sequencing: Spatially Precise In Situ Transcriptomics in Intact Biological Systems

genomics more details view paper
  • Downloaded 8,070 times
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    • Site-wide: 983
    • In genomics: 91
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STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

bioinformatics more details view paper
  • Downloaded 7,970 times
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    • Site-wide: 996
    • In bioinformatics: 59
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    • Site-wide: 3,267

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

genomics more details view paper
  • Downloaded 7,333 times
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    • Site-wide: 1,111
    • In genomics: 107
  • Year to date:
    • Site-wide: 6,073
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High-density spatial transcriptomics arrays for in situ tissue profiling

genomics more details view paper
  • Downloaded 7,096 times
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    • Site-wide: 1,162
    • In genomics: 114
  • Year to date:
    • Site-wide: 8,596
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DroNc-Seq: Deciphering cell types in human archived brain tissues by massively-parallel single nucleus RNA-seq

genomics more details view paper
  • Downloaded 6,965 times
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    • Site-wide: 1,187
    • In genomics: 116
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    • Site-wide: 39,017
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The enteric nervous system of the human and mouse colon at a single-cell resolution

genomics more details view paper
  • Downloaded 6,442 times
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    • Site-wide: 1,301
    • In genomics: 126
  • Year to date:
    • Site-wide: 4,180
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In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with Autism risk genes

genomics more details view paper
  • Downloaded 6,098 times
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    • Site-wide: 1,406
    • In genomics: 135
  • Year to date:
    • Site-wide: 2,703
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    • Site-wide: 2,703

Deciphering eukaryotic cis-regulatory logic with 100 million random promoters

genomics more details view paper
  • Downloaded 5,662 times
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    • Site-wide: 1,580
    • In genomics: 150
  • Year to date:
    • Site-wide: 30,471
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Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces

bioinformatics more details view paper
  • Downloaded 5,228 times
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    • Site-wide: 1,745
    • In bioinformatics: 142
  • Year to date:
    • Site-wide: 3,724
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    • Site-wide: 3,724

Genetic determinants of co-accessible chromatin regions in T cell activation across humans

genomics more details view paper
  • Downloaded 5,011 times
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    • Site-wide: 1,844
    • In genomics: 191
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    • Site-wide: 42,410
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An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 4,808 times
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    • Site-wide: 1,954
    • In neuroscience: 112
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    • Site-wide: 1,305
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C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

molecular biology more details view paper
  • Downloaded 4,737 times
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    • Site-wide: 2,002
    • In molecular biology: 38
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Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

neuroscience more details view paper
  • Downloaded 4,316 times
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    • Site-wide: 2,280
    • In neuroscience: 150
  • Year to date:
    • Site-wide: 1,343
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A single cell-based atlas of human microglial states reveals associations with neurological disorders and histopathological features of the aging brain

neuroscience more details view paper
  • Downloaded 4,313 times
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    • Site-wide: 2,282
    • In neuroscience: 151
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    • Site-wide: 20,782
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Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

genomics more details view paper
  • Downloaded 4,232 times
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    • Site-wide: 2,342
    • In genomics: 266
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Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

genomics more details view paper
  • Downloaded 4,161 times
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    • Site-wide: 2,391
    • In genomics: 271
  • Year to date:
    • Site-wide: 21,856
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    • Site-wide: 21,856

Pan-cancer single cell RNA-seq uncovers recurring programs of cellular heterogeneity

cancer biology more details view paper
  • Downloaded 4,107 times
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    • Site-wide: 2,441
    • In cancer biology: 35
  • Year to date:
    • Site-wide: 7,206
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    • Site-wide: 7,206

High-resolution interrogation of functional elements in the noncoding genome

molecular biology more details view paper
  • Downloaded 4,012 times
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    • Site-wide: 2,511
    • In molecular biology: 53
  • Year to date:
    • Site-wide: 60,333
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    • Site-wide: 60,333

Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

neuroscience more details view paper
  • Downloaded 4,007 times
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    • Site-wide: 2,517
    • In neuroscience: 172
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Scalable, multimodal profiling of chromatin accessibility and protein levels in single cells

genomics more details view paper
  • Downloaded 3,931 times
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    • Site-wide: 2,604
    • In genomics: 304
  • Year to date:
    • Site-wide: 1,054
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    • Site-wide: 1,054

Using viral load and epidemic dynamics to optimize pooled testing in resource constrained settings

epidemiology more details view paper
  • Downloaded 3,768 times
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    • Site-wide: 2,765
    • In epidemiology: 283
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    • Site-wide: 3,848
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A cellular and spatial map of the choroid plexus across brain ventricles and ages

neuroscience more details view paper
  • Downloaded 3,728 times
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    • Site-wide: 2,811
    • In neuroscience: 211
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Div-Seq: A single nucleus RNA-Seq method reveals dynamics of rare adult newborn neurons in the CNS

neuroscience more details view paper
  • Downloaded 3,711 times
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    • Site-wide: 2,843
    • In neuroscience: 214
  • Year to date:
    • Site-wide: 51,107
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    • Site-wide: 51,107

Molecular Logic of Cellular Diversification in the Mammalian Cerebral Cortex

developmental biology more details view paper
  • Downloaded 3,548 times
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    • Site-wide: 3,029
    • In developmental biology: 26
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    • Site-wide: 1,997
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    • Site-wide: 1,997

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 3,485 times
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    • Site-wide: 3,122
    • In developmental biology: 27
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    • Site-wide: 31,741
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Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

cancer biology more details view paper
  • Downloaded 3,467 times
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    • Site-wide: 3,142
    • In cancer biology: 49
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Composite measurements and molecular compressed sensing for highly efficient transcriptomics

systems biology more details view paper
  • Downloaded 3,300 times
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    • Site-wide: 3,367
    • In systems biology: 54
  • Year to date:
    • Site-wide: 79,682
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Simultaneous single cell measurements of intranuclear proteins and gene expression

genomics more details view paper
  • Downloaded 3,269 times
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    • Site-wide: 3,420
    • In genomics: 392
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    • Site-wide: 127
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A multimodal cell census and atlas of the mammalian primary motor cortex

neuroscience more details view paper
  • Downloaded 3,265 times
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    • Site-wide: 3,426
    • In neuroscience: 279
  • Year to date:
    • Site-wide: 1,379
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    • Site-wide: 1,379

A transcriptomic atlas of the mouse cerebellum reveals regional specializations and novel cell types

genomics more details view paper
  • Downloaded 3,151 times
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    • Site-wide: 3,608
    • In genomics: 412
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    • Site-wide: 1,658
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    • Site-wide: 1,658

Single-nucleus and spatial transcriptomics of archival pancreatic cancer reveals multi-compartment reprogramming after neoadjuvant treatment

genomics more details view paper
  • Downloaded 3,011 times
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    • Site-wide: 3,825
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    • Site-wide: 1,420
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Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram

genomics more details view paper
  • Downloaded 2,920 times
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    • Site-wide: 3,973
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    • Site-wide: 1,510
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Single-cell profiles of retinal neurons differing in resilience to injury reveal neuroprotective genes

neuroscience more details view paper
  • Downloaded 2,862 times
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    • Site-wide: 4,094
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    • Site-wide: 7,580
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Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

immunology more details view paper
  • Downloaded 2,729 times
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    • Site-wide: 4,389
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Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

immunology more details view paper
  • Downloaded 2,386 times
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    • Site-wide: 5,388
    • In immunology: 145
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Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

neuroscience more details view paper
  • Downloaded 2,383 times
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    • Site-wide: 5,401
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T helper cells modulate intestinal stem cell renewal and differentiation

immunology more details view paper
  • Downloaded 2,244 times
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    • Site-wide: 5,882
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    • Site-wide: 57,629

Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper
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    • Site-wide: 6,153
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Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases

genetic and genomic medicine more details view paper
  • Downloaded 2,130 times
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    • Site-wide: 6,339
    • In genetic and genomic medicine: 18
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    • Site-wide: 1,849
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    • Site-wide: 1,849

Compressed sensing for imaging transcriptomics

molecular biology more details view paper
  • Downloaded 2,121 times
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    • Site-wide: 6,370
    • In molecular biology: 145
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    • Site-wide: 11,294

Multiplexed single-cell profiling of post-perturbation transcriptional responses to define cancer vulnerabilities and therapeutic mechanism of action

cancer biology more details view paper
  • Downloaded 2,089 times
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    • Site-wide: 6,501
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In Silico Modeling of Metabolic State in Single Th17 Cells Reveals Novel Regulators of Inflammation and Autoimmunity

genomics more details view paper
  • Downloaded 2,080 times
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    • Site-wide: 6,562
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    • Site-wide: 1,891
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Landscape of X chromosome inactivation across human tissues

genomics more details view paper
  • Downloaded 2,040 times
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    • Site-wide: 6,748
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    • Site-wide: 70,408
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Longitudinal single cell profiling of regulatory T cells identifies IL-33 as a driver of tumor immunosuppression

cancer biology more details view paper
  • Downloaded 2,007 times
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    • Site-wide: 6,881
    • In cancer biology: 111
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    • Site-wide: 29,455
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Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics

genomics more details view paper
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    • Site-wide: 7,216
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    • Site-wide: 41,221
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    • Site-wide: 41,221

A quantitative model for characterizing the evolutionary history of mammalian gene expression

genomics more details view paper
  • Downloaded 1,914 times
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    • Site-wide: 7,398
    • In genomics: 822
  • Year to date:
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Combinatorial prediction of marker panels from single-cell transcriptomic data

bioinformatics more details view paper
  • Downloaded 1,809 times
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    • Site-wide: 8,066
    • In bioinformatics: 993
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    • Site-wide: None
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Massively parallel phenotyping of variant impact in cancer with Perturb-seq reveals a shift in the spectrum of cell states induced by somatic mutations

genomics more details view paper
  • Downloaded 1,780 times
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    • Site-wide: 8,265
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  • Year to date:
    • Site-wide: 2,584
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Mapping multicellular programs from single-cell profiles

systems biology more details view paper
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    • Site-wide: 8,336
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    • Site-wide: 6,452
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    • Site-wide: 6,452

SM-Omics: An automated platform for high-throughput spatial multi-omics

genomics more details view paper
  • Downloaded 1,735 times
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    • Site-wide: 8,604
    • In genomics: 972
  • Year to date:
    • Site-wide: 3,033
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    • Site-wide: 3,033

Single-nucleus RNA-Seq reveals a new type of brown adipocyte regulating thermogenesis

cell biology more details view paper
  • Downloaded 1,716 times
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    • Site-wide: 19,357

scSVA: an interactive tool for big data visualization and exploration in single-cell omics

bioinformatics more details view paper
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    • Site-wide: 8,971
    • In bioinformatics: 1,100
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GeNets: A unified web platform for network-based analyses of genomic data

genomics more details view paper
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    • Site-wide: 9,120
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    • Site-wide: 28,125
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Acquired FGFR and FGF alterations confer resistance to estrogen receptor (ER) targeted therapy in ER+ metastatic breast cancer

cancer biology more details view paper
  • Downloaded 1,655 times
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Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

bioinformatics more details view paper
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Multi-modal pooled Perturb-CITE-Seq screens in patient models define novel mechanisms of cancer immune evasion

genomics more details view paper
  • Downloaded 1,516 times
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    • Site-wide: 10,529
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    • Site-wide: 2,779
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Opposing immune and genetic forces shape oncogenic programs in synovial sarcoma

cancer biology more details view paper
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Metabolic and Epigenomic Regulation of Th17/Treg Balance by the Polyamine Pathway

immunology more details view paper
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Human brain organoids reveal accelerated development of cortical neuron classes as a shared feature of autism risk genes

developmental biology more details view paper
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    • Site-wide: 11,754
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    • Site-wide: 1,781
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    • Site-wide: 1,781

Single-cell multimodal profiling of proteins and chromatin accessibility using PHAGE-ATAC

genomics more details view paper
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    • Site-wide: 12,437
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    • Site-wide: 5,341
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BROCKMAN: Deciphering variance in epigenomic regulators by k-mer factorization

genomics more details view paper
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    • Site-wide: 13,282
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    • Site-wide: 108,046
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Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

genetics more details view paper
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    • Site-wide: 15,070
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Single cell profiling of immature human postnatal thymocytes resolves the complexity of intra-thymic lineage differentiation and thymus seeding precursors.

immunology more details view paper
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    • Site-wide: 15,768
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CELL ATLAS OF THE HUMAN FOVEA AND PERIPHERAL RETINA

neuroscience more details view paper
  • Downloaded 1,121 times
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    • Site-wide: 16,554
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An endogenous glucocorticoid-cytokine signaling circuit promotes CD8+ T cell dysfunction in the tumor microenvironment

immunology more details view paper
  • Downloaded 1,097 times
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Cycling cancer persister cells arise from lineages with distinct transcriptional and metabolic programs

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Shuffle-Seq: En masse combinatorial encoding for n-way genetic interaction screens

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Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

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A cell-free antibody engineering platform rapidly generates SARS-CoV-2 neutralizing antibodies

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Multicellular immune hubs and their organization in MMRd and MMRp colorectal cancer

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Conservation and divergence in modules of the transcriptional programs of the human and mouse immune systems

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Cell Atlas of Aqueous Humor Outflow Pathways in Eyes of Humans and Four Model Species Provides Insights into Glaucoma Pathogenesis

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Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs

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Transcriptional mediators of treatment resistance in lethal prostate cancer

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Three-dimensional spatial transcriptomics uncovers cell type dynamics in the rheumatoid arthritis synovium

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Regulatory network controlling tumor-promoting inflammation in human cancers

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RAAS blockade, kidney disease, and expression of ACE2, the entry receptor for SARS-CoV-2, in kidney epithelial and endothelial cells

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L1CAM is not Associated with Extracellular Vesicles in Human Cerebrospinal Fluid or Plasma

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MAUDE: Inferring expression changes in sorting-based CRISPR screens

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Multi-cellular communities are perturbed in the aging human brain and with Alzheimer's disease

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GWAS of stool frequency reveals genes, pathways, and cell types relevant to human gastrointestinal motility and irritable bowel syndrome

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Dietary suppression of MHC-II expression in intestinal stem cells enhances intestinal tumorigenesis

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