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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 65,085 bioRxiv papers from 288,450 authors.

Author: Aviv Regev

Rankings

  • All-time downloads: 143,382 (rank: 37 out of 288,450)
  • Categories:
    • bioengineering: 8,276 (rank: 19 (tie) out of 7,203)
    • bioinformatics: 20,691 (rank: 81 out of 25,155)
    • cancer biology: 4,849 (rank: 222 out of 17,961)
    • cell biology: 14,526 (rank: 15 out of 19,305)
    • developmental biology: 2,344 (rank: 297 (tie) out of 10,821)
    • evolutionary biology: 684 (rank: 5,224 (tie) out of 15,751)
    • genetics: 386 (rank: 18,655 (tie) out of 28,694)
    • genomics: 59,265 (rank: 100 out of 32,805)
    • immunology: 5,826 (rank: 87 out of 13,250)
    • molecular biology: 9,118 (rank: 41 out of 13,569)
    • neuroscience: 14,315 (rank: 181 out of 47,986)
    • systems biology: 3,102 (rank: 407 (tie) out of 8,739)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,746 times
  • Download rankings, all-time:
    • Site-wide: 80 out of 65,085
    • In cell biology: 3 out of 3,134
  • Year to date:
    • Site-wide: 4,875 out of 65,085
  • Since beginning of last month:
    • Site-wide: 6,467 out of 65,085

Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming.

bioinformatics more details view paper
  • Downloaded 10,665 times
  • Download rankings, all-time:
    • Site-wide: 97 out of 65,085
    • In bioinformatics: 17 out of 6,446
  • Year to date:
    • Site-wide: 307 out of 65,085
  • Since beginning of last month:
    • Site-wide: 888 out of 65,085

DNA microscopy: Optics-free spatio-genetic imaging by a stand-alone chemical reaction

bioengineering more details view paper
  • Downloaded 8,276 times
  • Download rankings, all-time:
    • Site-wide: 163 out of 65,085
    • In bioengineering: 3 out of 1,312
  • Year to date:
    • Site-wide: 117 out of 65,085
  • Since beginning of last month:
    • Site-wide: 957 out of 65,085

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 7,991 times
  • Download rankings, all-time:
    • Site-wide: 178 out of 65,085
    • In genomics: 52 out of 4,449
  • Year to date:
    • Site-wide: 37 out of 65,085
  • Since beginning of last month:
    • Site-wide: 139 out of 65,085

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper
  • Downloaded 7,213 times
  • Download rankings, all-time:
    • Site-wide: 213 out of 65,085
    • In genomics: 61 out of 4,449
  • Year to date:
    • Site-wide: 48 out of 65,085
  • Since beginning of last month:
    • Site-wide: 102 out of 65,085

DroNc-Seq: Deciphering cell types in human archived brain tissues by massively-parallel single nucleus RNA-seq

genomics more details view paper
  • Downloaded 6,532 times
  • Download rankings, all-time:
    • Site-wide: 263 out of 65,085
    • In genomics: 75 out of 4,449
  • Year to date:
    • Site-wide: 7,741 out of 65,085
  • Since beginning of last month:
    • Site-wide: 11,793 out of 65,085

STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

bioinformatics more details view paper
  • Downloaded 6,011 times
  • Download rankings, all-time:
    • Site-wide: 309 out of 65,085
    • In bioinformatics: 56 out of 6,446
  • Year to date:
    • Site-wide: 787 out of 65,085
  • Since beginning of last month:
    • Site-wide: 1,955 out of 65,085

High-density spatial transcriptomics arrays for in situ tissue profiling

genomics more details view paper
  • Downloaded 5,151 times
  • Download rankings, all-time:
    • Site-wide: 398 out of 65,085
    • In genomics: 105 out of 4,449
  • Year to date:
    • Site-wide: 79 out of 65,085
  • Since beginning of last month:
    • Site-wide: 332 out of 65,085

Deciphering eukaryotic cis-regulatory logic with 100 million random promoters

genomics more details view paper
  • Downloaded 5,009 times
  • Download rankings, all-time:
    • Site-wide: 418 out of 65,085
    • In genomics: 109 out of 4,449
  • Year to date:
    • Site-wide: 2,162 out of 65,085
  • Since beginning of last month:
    • Site-wide: 6,623 out of 65,085

Genetic determinants of co-accessible chromatin regions in T cell activation across humans

genomics more details view paper
  • Downloaded 4,620 times
  • Download rankings, all-time:
    • Site-wide: 490 out of 65,085
    • In genomics: 126 out of 4,449
  • Year to date:
    • Site-wide: 11,146 out of 65,085
  • Since beginning of last month:
    • Site-wide: 13,949 out of 65,085

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

molecular biology more details view paper
  • Downloaded 4,426 times
  • Download rankings, all-time:
    • Site-wide: 540 out of 65,085
    • In molecular biology: 13 out of 2,059
  • Year to date:
    • Site-wide: 15,299 out of 65,085
  • Since beginning of last month:
    • Site-wide: 6,998 out of 65,085

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

genomics more details view paper
  • Downloaded 4,232 times
  • Download rankings, all-time:
    • Site-wide: 592 out of 65,085
    • In genomics: 155 out of 4,449
  • Year to date:
    • Site-wide: 228 out of 65,085
  • Since beginning of last month:
    • Site-wide: None out of 65,085

High-resolution interrogation of functional elements in the noncoding genome

molecular biology more details view paper
  • Downloaded 3,759 times
  • Download rankings, all-time:
    • Site-wide: 744 out of 65,085
    • In molecular biology: 19 out of 2,059
  • Year to date:
    • Site-wide: 38,908 out of 65,085
  • Since beginning of last month:
    • Site-wide: 44,248 out of 65,085

Div-Seq: A single nucleus RNA-Seq method reveals dynamics of rare adult newborn neurons in the CNS

neuroscience more details view paper
  • Downloaded 3,525 times
  • Download rankings, all-time:
    • Site-wide: 841 out of 65,085
    • In neuroscience: 112 out of 11,658
  • Year to date:
    • Site-wide: 30,437 out of 65,085
  • Since beginning of last month:
    • Site-wide: 28,001 out of 65,085

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

genomics more details view paper
  • Downloaded 3,409 times
  • Download rankings, all-time:
    • Site-wide: 890 out of 65,085
    • In genomics: 231 out of 4,449
  • Year to date:
    • Site-wide: 329 out of 65,085
  • Since beginning of last month:
    • Site-wide: 2,170 out of 65,085

Composite measurements and molecular compressed sensing for highly efficient transcriptomics

systems biology more details view paper
  • Downloaded 3,102 times
  • Download rankings, all-time:
    • Site-wide: 1,057 out of 65,085
    • In systems biology: 20 out of 1,833
  • Year to date:
    • Site-wide: 20,634 out of 65,085
  • Since beginning of last month:
    • Site-wide: 14,329 out of 65,085

Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

neuroscience more details view paper
  • Downloaded 3,067 times
  • Download rankings, all-time:
    • Site-wide: 1,089 out of 65,085
    • In neuroscience: 153 out of 11,658
  • Year to date:
    • Site-wide: 428 out of 65,085
  • Since beginning of last month:
    • Site-wide: 1,590 out of 65,085

A single cell-based atlas of human microglial states reveals associations with neurological disorders and histopathological features of the aging brain

neuroscience more details view paper
  • Downloaded 3,054 times
  • Download rankings, all-time:
    • Site-wide: 1,097 out of 65,085
    • In neuroscience: 155 out of 11,658
  • Year to date:
    • Site-wide: 692 out of 65,085
  • Since beginning of last month:
    • Site-wide: 1,609 out of 65,085

The enteric nervous system of the human and mouse colon at a single-cell resolution

genomics more details view paper
  • Downloaded 2,452 times
  • Download rankings, all-time:
    • Site-wide: 1,625 out of 65,085
    • In genomics: 362 out of 4,449
  • Year to date:
    • Site-wide: 298 out of 65,085
  • Since beginning of last month:
    • Site-wide: 191 out of 65,085

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 2,344 times
  • Download rankings, all-time:
    • Site-wide: 1,765 out of 65,085
    • In developmental biology: 22 out of 1,931
  • Year to date:
    • Site-wide: 344 out of 65,085
  • Since beginning of last month:
    • Site-wide: 351 out of 65,085

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

genomics more details view paper
  • Downloaded 2,244 times
  • Download rankings, all-time:
    • Site-wide: 1,913 out of 65,085
    • In genomics: 419 out of 4,449
  • Year to date:
    • Site-wide: 381 out of 65,085
  • Since beginning of last month:
    • Site-wide: 85 out of 65,085

Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

immunology more details view paper
  • Downloaded 2,068 times
  • Download rankings, all-time:
    • Site-wide: 2,213 out of 65,085
    • In immunology: 29 out of 1,648
  • Year to date:
    • Site-wide: 22,400 out of 65,085
  • Since beginning of last month:
    • Site-wide: 28,186 out of 65,085

In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with Autism risk genes

genomics more details view paper
  • Downloaded 2,023 times
  • Download rankings, all-time:
    • Site-wide: 2,299 out of 65,085
    • In genomics: 484 out of 4,449
  • Year to date:
    • Site-wide: 462 out of 65,085
  • Since beginning of last month:
    • Site-wide: 18 out of 65,085

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

neuroscience more details view paper
  • Downloaded 1,974 times
  • Download rankings, all-time:
    • Site-wide: 2,399 out of 65,085
    • In neuroscience: 349 out of 11,658
  • Year to date:
    • Site-wide: 1,600 out of 65,085
  • Since beginning of last month:
    • Site-wide: 7,101 out of 65,085

T helper cells modulate intestinal stem cell renewal and differentiation

immunology more details view paper
  • Downloaded 1,971 times
  • Download rankings, all-time:
    • Site-wide: 2,408 out of 65,085
    • In immunology: 31 out of 1,648
  • Year to date:
    • Site-wide: 6,485 out of 65,085
  • Since beginning of last month:
    • Site-wide: 4,797 out of 65,085

Landscape of X chromosome inactivation across human tissues

genomics more details view paper
  • Downloaded 1,850 times
  • Download rankings, all-time:
    • Site-wide: 2,659 out of 65,085
    • In genomics: 539 out of 4,449
  • Year to date:
    • Site-wide: 39,271 out of 65,085
  • Since beginning of last month:
    • Site-wide: 44,346 out of 65,085

A quantitative model for characterizing the evolutionary history of mammalian gene expression

genomics more details view paper
  • Downloaded 1,717 times
  • Download rankings, all-time:
    • Site-wide: 3,044 out of 65,085
    • In genomics: 597 out of 4,449
  • Year to date:
    • Site-wide: 13,315 out of 65,085
  • Since beginning of last month:
    • Site-wide: 33,164 out of 65,085

A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia demonstrates cancer-crosstalk with stroma to impair normal tissue function

cell biology more details view paper
  • Downloaded 1,692 times
  • Download rankings, all-time:
    • Site-wide: 3,117 out of 65,085
    • In cell biology: 84 out of 3,134
  • Year to date:
    • Site-wide: 655 out of 65,085
  • Since beginning of last month:
    • Site-wide: 7,220 out of 65,085

Pan-cancer single cell RNA-seq uncovers recurring programs of cellular heterogeneity

cancer biology more details view paper
  • Downloaded 1,609 times
  • Download rankings, all-time:
    • Site-wide: 3,381 out of 65,085
    • In cancer biology: 84 out of 2,168
  • Year to date:
    • Site-wide: 722 out of 65,085
  • Since beginning of last month:
    • Site-wide: 28 out of 65,085

Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

immunology more details view paper
  • Downloaded 1,519 times
  • Download rankings, all-time:
    • Site-wide: 3,719 out of 65,085
    • In immunology: 51 out of 1,648
  • Year to date:
    • Site-wide: 1,801 out of 65,085
  • Since beginning of last month:
    • Site-wide: 2,532 out of 65,085

Combinatorial prediction of marker panels from single-cell transcriptomic data

bioinformatics more details view paper
  • Downloaded 1,491 times
  • Download rankings, all-time:
    • Site-wide: 3,845 out of 65,085
    • In bioinformatics: 768 out of 6,446
  • Year to date:
    • Site-wide: 818 out of 65,085
  • Since beginning of last month:
    • Site-wide: 1,369 out of 65,085

GeNets: A unified web platform for network-based analyses of genomic data

genomics more details view paper
  • Downloaded 1,489 times
  • Download rankings, all-time:
    • Site-wide: 3,855 out of 65,085
    • In genomics: 706 out of 4,449
  • Year to date:
    • Site-wide: 46,520 out of 65,085
  • Since beginning of last month:
    • Site-wide: 36,610 out of 65,085

Longitudinal single cell profiling of regulatory T cells identifies IL-33 as a driver of tumor immunosuppression

cancer biology more details view paper
  • Downloaded 1,465 times
  • Download rankings, all-time:
    • Site-wide: 3,964 out of 65,085
    • In cancer biology: 102 out of 2,168
  • Year to date:
    • Site-wide: 853 out of 65,085
  • Since beginning of last month:
    • Site-wide: 4,992 out of 65,085

A cellular and spatial map of the choroid plexus across brain ventricles and ages

neuroscience more details view paper
  • Downloaded 1,458 times
  • Download rankings, all-time:
    • Site-wide: 3,991 out of 65,085
    • In neuroscience: 621 out of 11,658
  • Year to date:
    • Site-wide: 859 out of 65,085
  • Since beginning of last month:
    • Site-wide: 1,148 out of 65,085

Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics

genomics more details view paper
  • Downloaded 1,390 times
  • Download rankings, all-time:
    • Site-wide: 4,332 out of 65,085
    • In genomics: 778 out of 4,449
  • Year to date:
    • Site-wide: 948 out of 65,085
  • Since beginning of last month:
    • Site-wide: 7,457 out of 65,085

scSVA: an interactive tool for big data visualization and exploration in single-cell omics

bioinformatics more details view paper
  • Downloaded 1,244 times
  • Download rankings, all-time:
    • Site-wide: 5,176 out of 65,085
    • In bioinformatics: 1,001 out of 6,446
  • Year to date:
    • Site-wide: 1,181 out of 65,085
  • Since beginning of last month:
    • Site-wide: 9,940 out of 65,085

Single-cell profiles of retinal neurons differing in resilience to injury reveal neuroprotective genes

neuroscience more details view paper
  • Downloaded 1,237 times
  • Download rankings, all-time:
    • Site-wide: 5,220 out of 65,085
    • In neuroscience: 814 out of 11,658
  • Year to date:
    • Site-wide: 1,195 out of 65,085
  • Since beginning of last month:
    • Site-wide: 461 out of 65,085

BROCKMAN: Deciphering variance in epigenomic regulators by k-mer factorization

genomics more details view paper
  • Downloaded 1,157 times
  • Download rankings, all-time:
    • Site-wide: 5,852 out of 65,085
    • In genomics: 984 out of 4,449
  • Year to date:
    • Site-wide: 34,481 out of 65,085
  • Since beginning of last month:
    • Site-wide: 34,610 out of 65,085

Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper
  • Downloaded 1,088 times
  • Download rankings, all-time:
    • Site-wide: 6,504 out of 65,085
    • In cell biology: 207 out of 3,134
  • Year to date:
    • Site-wide: 1,496 out of 65,085
  • Since beginning of last month:
    • Site-wide: 496 out of 65,085

Compressed sensing for imaging transcriptomics

molecular biology more details view paper
  • Downloaded 933 times
  • Download rankings, all-time:
    • Site-wide: 8,338 out of 65,085
    • In molecular biology: 255 out of 2,059
  • Year to date:
    • Site-wide: 1,941 out of 65,085
  • Since beginning of last month:
    • Site-wide: 2,931 out of 65,085

Acquired FGFR and FGF alterations confer resistance to estrogen receptor (ER) targeted therapy in ER+ metastatic breast cancer

cancer biology more details view paper
  • Downloaded 789 times
  • Download rankings, all-time:
    • Site-wide: 10,768 out of 65,085
    • In cancer biology: 310 out of 2,168
  • Year to date:
    • Site-wide: 2,599 out of 65,085
  • Since beginning of last month:
    • Site-wide: 2,440 out of 65,085

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

genomics more details view paper
  • Downloaded 786 times
  • Download rankings, all-time:
    • Site-wide: 10,830 out of 65,085
    • In genomics: 1,557 out of 4,449
  • Year to date:
    • Site-wide: 38,819 out of 65,085
  • Since beginning of last month:
    • Site-wide: 37,814 out of 65,085

Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs

evolutionary biology more details view paper
  • Downloaded 684 times
  • Download rankings, all-time:
    • Site-wide: 13,317 out of 65,085
    • In evolutionary biology: 925 out of 4,349
  • Year to date:
    • Site-wide: 56,811 out of 65,085
  • Since beginning of last month:
    • Site-wide: 55,104 out of 65,085

Conservation and divergence in modules of the transcriptional programs of the human and mouse immune systems

bioinformatics more details view paper
  • Downloaded 629 times
  • Download rankings, all-time:
    • Site-wide: 14,891 out of 65,085
    • In bioinformatics: 2,352 out of 6,446
  • Year to date:
    • Site-wide: 24,233 out of 65,085
  • Since beginning of last month:
    • Site-wide: 26,442 out of 65,085

Opposing immune and genetic forces shape oncogenic programs in synovial sarcoma

cancer biology more details view paper
  • Downloaded 524 times
  • Download rankings, all-time:
    • Site-wide: 19,096 out of 65,085
    • In cancer biology: 576 out of 2,168
  • Year to date:
    • Site-wide: 5,321 out of 65,085
  • Since beginning of last month:
    • Site-wide: 3,803 out of 65,085

Regulatory network controlling tumor-promoting inflammation in human cancers

cancer biology more details view paper
  • Downloaded 462 times
  • Download rankings, all-time:
    • Site-wide: 22,268 out of 65,085
    • In cancer biology: 680 out of 2,168
  • Year to date:
    • Site-wide: 24,597 out of 65,085
  • Since beginning of last month:
    • Site-wide: 38,018 out of 65,085

Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

bioinformatics more details view paper
  • Downloaded 392 times
  • Download rankings, all-time:
    • Site-wide: 26,764 out of 65,085
    • In bioinformatics: 3,621 out of 6,446
  • Year to date:
    • Site-wide: 8,569 out of 65,085
  • Since beginning of last month:
    • Site-wide: 389 out of 65,085

Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

genetics more details view paper
  • Downloaded 386 times
  • Download rankings, all-time:
    • Site-wide: 27,193 out of 65,085
    • In genetics: 1,760 out of 3,690
  • Year to date:
    • Site-wide: 8,806 out of 65,085
  • Since beginning of last month:
    • Site-wide: 396 out of 65,085

An endogenous glucocorticoid-cytokine signaling circuit promotes CD8+ T cell dysfunction in the tumor microenvironment

immunology more details view paper
  • Downloaded 268 times
  • Download rankings, all-time:
    • Site-wide: 37,975 out of 65,085
    • In immunology: 789 out of 1,648
  • Year to date:
    • Site-wide: 15,377 out of 65,085
  • Since beginning of last month:
    • Site-wide: 731 out of 65,085

MAUDE: Inferring expression changes in sorting-based CRISPR screens

bioinformatics more details view paper
  • Downloaded 259 times
  • Download rankings, all-time:
    • Site-wide: 39,066 out of 65,085
    • In bioinformatics: 4,671 out of 6,446
  • Year to date:
    • Site-wide: 16,210 out of 65,085
  • Since beginning of last month:
    • Site-wide: 781 out of 65,085

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