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Author: Aviv Regev

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  • All-time downloads: 231,343 (rank: 61 out of 397,262)
  • Categories:
    • bioengineering: 9,107 (rank: 50 (tie) out of 11,739)
    • bioinformatics: 28,909 (rank: 82 out of 33,896)
    • cancer biology: 12,629 (rank: 112 out of 27,581)
    • cell biology: 15,899 (rank: 16 out of 29,799)
    • developmental biology: 5,313 (rank: 132 out of 15,438)
    • evolutionary biology: 748 (rank: 7,016 (tie) out of 20,295)
    • genetics: 894 (rank: 14,170 (tie) out of 36,448)
    • genomics: 96,162 (rank: 33 out of 42,202)
    • immunology: 9,276 (rank: 378 out of 22,417)
    • molecular biology: 23,931 (rank: 15 out of 20,979)
    • neuroscience: 25,240 (rank: 145 out of 66,490)
    • systems biology: 3,235 (rank: 817 (tie) out of 11,593)

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Preprints

Mapping multicellular programs from single-cell profiles

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LAMP-Seq: Population-Scale COVID-19 Diagnostics Using Combinatorial Barcoding

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The Human Cell Atlas

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Systematic comparative analysis of single cell RNA-sequencing methods

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Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

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Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming.

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DNA microscopy: Optics-free spatio-genetic imaging by a stand-alone chemical reaction

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STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

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DroNc-Seq: Deciphering cell types in human archived brain tissues by massively-parallel single nucleus RNA-seq

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A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

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High-density spatial transcriptomics arrays for in situ tissue profiling

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Deciphering eukaryotic cis-regulatory logic with 100 million random promoters

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Expansion Sequencing: Spatially Precise In Situ Transcriptomics in Intact Biological Systems

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The enteric nervous system of the human and mouse colon at a single-cell resolution

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Chromatin potential identified by shared single cell profiling of RNA and chromatin

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Genetic determinants of co-accessible chromatin regions in T cell activation across humans

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C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

molecular biology more details view paper
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In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with Autism risk genes

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Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces

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Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

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A single cell-based atlas of human microglial states reveals associations with neurological disorders and histopathological features of the aging brain

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High-resolution interrogation of functional elements in the noncoding genome

molecular biology more details view paper
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Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

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Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

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Div-Seq: A single nucleus RNA-Seq method reveals dynamics of rare adult newborn neurons in the CNS

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Pan-cancer single cell RNA-seq uncovers recurring programs of cellular heterogeneity

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Composite measurements and molecular compressed sensing for highly efficient transcriptomics

systems biology more details view paper
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Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

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An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

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A cellular and spatial map of the choroid plexus across brain ventricles and ages

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Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

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Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

immunology more details view paper
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Single-cell profiles of retinal neurons differing in resilience to injury reveal neuroprotective genes

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Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

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Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

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Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

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T helper cells modulate intestinal stem cell renewal and differentiation

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Molecular Logic of Cellular Diversification in the Mammalian Cerebral Cortex

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Landscape of X chromosome inactivation across human tissues

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Longitudinal single cell profiling of regulatory T cells identifies IL-33 as a driver of tumor immunosuppression

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A transcriptomic atlas of the mouse cerebellum reveals regional specializations and novel cell types

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A quantitative model for characterizing the evolutionary history of mammalian gene expression

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Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics

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Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

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Combinatorial prediction of marker panels from single-cell transcriptomic data

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Multiplexed single-cell profiling of post-perturbation transcriptional responses to define cancer vulnerabilities and therapeutic mechanism of action

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GeNets: A unified web platform for network-based analyses of genomic data

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Compressed sensing for imaging transcriptomics

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scSVA: an interactive tool for big data visualization and exploration in single-cell omics

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Acquired FGFR and FGF alterations confer resistance to estrogen receptor (ER) targeted therapy in ER+ metastatic breast cancer

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Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

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BROCKMAN: Deciphering variance in epigenomic regulators by k-mer factorization

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Single-nucleus RNA-Seq reveals a new type of brown adipocyte regulating thermogenesis

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Opposing immune and genetic forces shape oncogenic programs in synovial sarcoma

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In Silico Modeling of Metabolic State in Single Th17 Cells Reveals Novel Regulators of Inflammation and Autoimmunity

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CELL ATLAS OF THE HUMAN FOVEA AND PERIPHERAL RETINA

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Metabolic and Epigenomic Regulation of Th17/Treg Balance by the Polyamine Pathway

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Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

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Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

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Single cell profiling of immature human postnatal thymocytes resolves the complexity of intra-thymic lineage differentiation and thymus seeding precursors.

immunology more details view paper
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Conservation and divergence in modules of the transcriptional programs of the human and mouse immune systems

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Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs

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An endogenous glucocorticoid-cytokine signaling circuit promotes CD8+ T cell dysfunction in the tumor microenvironment

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Shuffle-Seq: En masse combinatorial encoding for n-way genetic interaction screens

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Cell Atlas of Aqueous Humor Outflow Pathways in Eyes of Humans and Four Model Species Provides Insights into Glaucoma Pathogenesis

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Regulatory network controlling tumor-promoting inflammation in human cancers

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MAUDE: Inferring expression changes in sorting-based CRISPR screens

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Transcriptional mediators of treatment resistance in lethal prostate cancer

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RAAS blockade, kidney disease, and expression of ACE2, the entry receptor for SARS-CoV-2, in kidney epithelial and endothelial cells

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Cycling cancer persister cells arise from lineages with distinct transcriptional and metabolic programs

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