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Author: Aviv Regev

  • ORCiD: http://orcid.org/0000-0003-3293-3158
  • Most recently observed institution: Klarman Cell Observatory, Broad Institute of Harvard and MIT; Howard Hughes Medical Institute; Koch Institute for Integrative Cancer Research, Department of Biology, Massachusetts Institute of Technology

Rankings

  • All-time downloads: 336,257 (rank: 63 )
  • Categories:
    • bioengineering: 10,463 (rank: 55 )
    • bioinformatics: 33,737 (rank: 82 )
    • cancer biology: 20,000 (rank: 41 )
    • cell biology: 18,787 (rank: 15 )
    • developmental biology: 9,135 (rank: 60 )
    • epidemiology: 3,888 (rank: 3,042 (tie) )
    • evolutionary biology: 804 (rank: 8,587 (tie) )
    • gastroenterology: 501 (rank: 671 (tie) )
    • genetic and genomic medicine: 2,653 (rank: 491 (tie) )
    • genetics: 1,235 (rank: 13,561 (tie) )
    • genomics: 150,026 (rank: 5 )
    • immunology: 11,805 (rank: 581 )
    • molecular biology: 28,566 (rank: 23 )
    • neuroscience: 39,237 (rank: 76 )
    • systems biology: 5,420 (rank: 614 )

Downloads per author, site-wide

Preprints

LAMP-Seq: Population-Scale COVID-19 Diagnostics Using Combinatorial Barcoding

molecular biology more details view paper
  • Downloaded 17,306 times
  • Download rankings, all-time:
    • Site-wide: 403
    • In molecular biology: 7
  • Year to date:
    • Site-wide: 1,057
  • Since beginning of last month:
    • Site-wide: 1,533

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper
  • Downloaded 14,270 times
  • Download rankings, all-time:
    • Site-wide: 505
    • In genomics: 30
  • Year to date:
    • Site-wide: 1,612
  • Since beginning of last month:
    • Site-wide: 1,941

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 12,816 times
  • Download rankings, all-time:
    • Site-wide: 588
    • In genomics: 40
  • Year to date:
    • Site-wide: 3,394
  • Since beginning of last month:
    • Site-wide: 8,770

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 12,637 times
  • Download rankings, all-time:
    • Site-wide: 604
    • In cell biology: 4
  • Year to date:
    • Site-wide: 21,198
  • Since beginning of last month:
    • Site-wide: 18,953

Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming.

bioinformatics more details view paper
  • Downloaded 11,817 times
  • Download rankings, all-time:
    • Site-wide: 657
    • In bioinformatics: 26
  • Year to date:
    • Site-wide: 13,501
  • Since beginning of last month:
    • Site-wide: 13,418

DNA microscopy: Optics-free spatio-genetic imaging by a stand-alone chemical reaction

bioengineering more details view paper
  • Downloaded 9,298 times
  • Download rankings, all-time:
    • Site-wide: 907
    • In bioengineering: 7
  • Year to date:
    • Site-wide: 55,203
  • Since beginning of last month:
    • Site-wide: 57,397

Chromatin potential identified by shared single cell profiling of RNA and chromatin

genomics more details view paper
  • Downloaded 9,031 times
  • Download rankings, all-time:
    • Site-wide: 949
    • In genomics: 75
  • Year to date:
    • Site-wide: 1,285
  • Since beginning of last month:
    • Site-wide: 1,720

Expansion Sequencing: Spatially Precise In Situ Transcriptomics in Intact Biological Systems

genomics more details view paper
  • Downloaded 8,302 times
  • Download rankings, all-time:
    • Site-wide: 1,051
    • In genomics: 92
  • Year to date:
    • Site-wide: 1,110
  • Since beginning of last month:
    • Site-wide: 7,009

STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

bioinformatics more details view paper
  • Downloaded 8,267 times
  • Download rankings, all-time:
    • Site-wide: 1,057
    • In bioinformatics: 63
  • Year to date:
    • Site-wide: 3,458
  • Since beginning of last month:
    • Site-wide: 5,772

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

genomics more details view paper
  • Downloaded 7,506 times
  • Download rankings, all-time:
    • Site-wide: 1,191
    • In genomics: 107
  • Year to date:
    • Site-wide: 7,111
  • Since beginning of last month:
    • Site-wide: 12,401

High-density spatial transcriptomics arrays for in situ tissue profiling

genomics more details view paper
  • Downloaded 7,222 times
  • Download rankings, all-time:
    • Site-wide: 1,254
    • In genomics: 114
  • Year to date:
    • Site-wide: 10,650
  • Since beginning of last month:
    • Site-wide: 8,039

DroNc-Seq: Deciphering cell types in human archived brain tissues by massively-parallel single nucleus RNA-seq

genomics more details view paper
  • Downloaded 7,010 times
  • Download rankings, all-time:
    • Site-wide: 1,299
    • In genomics: 117
  • Year to date:
    • Site-wide: 42,644
  • Since beginning of last month:
    • Site-wide: 28,726

The enteric nervous system of the human and mouse colon at a single-cell resolution

genomics more details view paper
  • Downloaded 6,778 times
  • Download rankings, all-time:
    • Site-wide: 1,338
    • In genomics: 120
  • Year to date:
    • Site-wide: 3,442
  • Since beginning of last month:
    • Site-wide: 3,806

In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with Autism risk genes

genomics more details view paper
  • Downloaded 6,368 times
  • Download rankings, all-time:
    • Site-wide: 1,471
    • In genomics: 132
  • Year to date:
    • Site-wide: 3,402
  • Since beginning of last month:
    • Site-wide: 4,225

Deciphering eukaryotic cis-regulatory logic with 100 million random promoters

genomics more details view paper
  • Downloaded 5,685 times
  • Download rankings, all-time:
    • Site-wide: 1,731
    • In genomics: 157
  • Year to date:
    • Site-wide: 50,649
  • Since beginning of last month:
    • Site-wide: 55,689

Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces

bioinformatics more details view paper
  • Downloaded 5,575 times
  • Download rankings, all-time:
    • Site-wide: 1,772
    • In bioinformatics: 136
  • Year to date:
    • Site-wide: 3,207
  • Since beginning of last month:
    • Site-wide: 3,307

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

neuroscience more details view paper
  • Downloaded 5,314 times
  • Download rankings, all-time:
    • Site-wide: 1,890
    • In neuroscience: 102
  • Year to date:
    • Site-wide: 1,471
  • Since beginning of last month:
    • Site-wide: 3,391

Simultaneous single cell measurements of intranuclear proteins and gene expression

genomics more details view paper
  • Downloaded 5,073 times
  • Download rankings, all-time:
    • Site-wide: 2,007
    • In genomics: 194
  • Year to date:
    • Site-wide: 194
  • Since beginning of last month:
    • Site-wide: 993

Genetic determinants of co-accessible chromatin regions in T cell activation across humans

genomics more details view paper
  • Downloaded 5,034 times
  • Download rankings, all-time:
    • Site-wide: 2,027
    • In genomics: 199
  • Year to date:
    • Site-wide: 59,374
  • Since beginning of last month:
    • Site-wide: 71,739

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

neuroscience more details view paper
  • Downloaded 4,902 times
  • Download rankings, all-time:
    • Site-wide: 2,112
    • In neuroscience: 122
  • Year to date:
    • Site-wide: 1,331
  • Since beginning of last month:
    • Site-wide: 1,480

A cellular and spatial map of the choroid plexus across brain ventricles and ages

neuroscience more details view paper
  • Downloaded 4,783 times
  • Download rankings, all-time:
    • Site-wide: 2,198
    • In neuroscience: 134
  • Year to date:
    • Site-wide: 1,321
  • Since beginning of last month:
    • Site-wide: 1,587

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

molecular biology more details view paper
  • Downloaded 4,759 times
  • Download rankings, all-time:
    • Site-wide: 2,211
    • In molecular biology: 44
  • Year to date:
    • Site-wide: 74,886
  • Since beginning of last month:
    • Site-wide: 81,789

Scalable, multimodal profiling of chromatin accessibility and protein levels in single cells

genomics more details view paper
  • Downloaded 4,630 times
  • Download rankings, all-time:
    • Site-wide: 2,292
    • In genomics: 243
  • Year to date:
    • Site-wide: 1,074
  • Since beginning of last month:
    • Site-wide: 1,068

A single cell-based atlas of human microglial states reveals associations with neurological disorders and histopathological features of the aging brain

neuroscience more details view paper
  • Downloaded 4,393 times
  • Download rankings, all-time:
    • Site-wide: 2,474
    • In neuroscience: 160
  • Year to date:
    • Site-wide: 22,865
  • Since beginning of last month:
    • Site-wide: 15,868

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

genomics more details view paper
  • Downloaded 4,279 times
  • Download rankings, all-time:
    • Site-wide: 2,559
    • In genomics: 278
  • Year to date:
    • Site-wide: 17,053
  • Since beginning of last month:
    • Site-wide: 15,865

Pan-cancer single cell RNA-seq uncovers recurring programs of cellular heterogeneity

cancer biology more details view paper
  • Downloaded 4,254 times
  • Download rankings, all-time:
    • Site-wide: 2,577
    • In cancer biology: 36
  • Year to date:
    • Site-wide: 8,753
  • Since beginning of last month:
    • Site-wide: 13,269

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

genomics more details view paper
  • Downloaded 4,232 times
  • Download rankings, all-time:
    • Site-wide: 2,603
    • In genomics: 285
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

neuroscience more details view paper
  • Downloaded 4,210 times
  • Download rankings, all-time:
    • Site-wide: 2,619
    • In neuroscience: 173
  • Year to date:
    • Site-wide: 14,017
  • Since beginning of last month:
    • Site-wide: 13,439

High-resolution interrogation of functional elements in the noncoding genome

molecular biology more details view paper
  • Downloaded 4,032 times
  • Download rankings, all-time:
    • Site-wide: 2,780
    • In molecular biology: 58
  • Year to date:
    • Site-wide: 73,272
  • Since beginning of last month:
    • Site-wide: 55,877

Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram

genomics more details view paper
  • Downloaded 3,963 times
  • Download rankings, all-time:
    • Site-wide: 2,863
    • In genomics: 316
  • Year to date:
    • Site-wide: 880
  • Since beginning of last month:
    • Site-wide: 1,464

Using viral load and epidemic dynamics to optimize pooled testing in resource constrained settings

epidemiology more details view paper
  • Downloaded 3,888 times
  • Download rankings, all-time:
    • Site-wide: 2,936
    • In epidemiology: 304
  • Year to date:
    • Site-wide: 6,891
  • Since beginning of last month:
    • Site-wide: 19,267

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

cancer biology more details view paper
  • Downloaded 3,869 times
  • Download rankings, all-time:
    • Site-wide: 2,962
    • In cancer biology: 43
  • Year to date:
    • Site-wide: 2,165
  • Since beginning of last month:
    • Site-wide: 2,488

Molecular Logic of Cellular Diversification in the Mammalian Cerebral Cortex

developmental biology more details view paper
  • Downloaded 3,781 times
  • Download rankings, all-time:
    • Site-wide: 3,056
    • In developmental biology: 26
  • Year to date:
    • Site-wide: 3,139
  • Since beginning of last month:
    • Site-wide: 5,983

Div-Seq: A single nucleus RNA-Seq method reveals dynamics of rare adult newborn neurons in the CNS

neuroscience more details view paper
  • Downloaded 3,763 times
  • Download rankings, all-time:
    • Site-wide: 3,086
    • In neuroscience: 226
  • Year to date:
    • Site-wide: 42,609
  • Since beginning of last month:
    • Site-wide: 63,010

A transcriptomic atlas of the mouse cerebellum reveals regional specializations and novel cell types

genomics more details view paper
  • Downloaded 3,656 times
  • Download rankings, all-time:
    • Site-wide: 3,218
    • In genomics: 361
  • Year to date:
    • Site-wide: 1,662
  • Since beginning of last month:
    • Site-wide: 2,636

A multimodal cell census and atlas of the mammalian primary motor cortex

neuroscience more details view paper
  • Downloaded 3,652 times
  • Download rankings, all-time:
    • Site-wide: 3,228
    • In neuroscience: 244
  • Year to date:
    • Site-wide: 1,838
  • Since beginning of last month:
    • Site-wide: 5,824

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 3,605 times
  • Download rankings, all-time:
    • Site-wide: 3,291
    • In developmental biology: 27
  • Year to date:
    • Site-wide: 19,172
  • Since beginning of last month:
    • Site-wide: 27,368

Single-nucleus and spatial transcriptomics of archival pancreatic cancer reveals multi-compartment reprogramming after neoadjuvant treatment

genomics more details view paper
  • Downloaded 3,586 times
  • Download rankings, all-time:
    • Site-wide: 3,313
    • In genomics: 371
  • Year to date:
    • Site-wide: 1,393
  • Since beginning of last month:
    • Site-wide: 1,170

Composite measurements and molecular compressed sensing for highly efficient transcriptomics

systems biology more details view paper
  • Downloaded 3,322 times
  • Download rankings, all-time:
    • Site-wide: 3,691
    • In systems biology: 57
  • Year to date:
    • Site-wide: 79,294
  • Since beginning of last month:
    • Site-wide: 46,345

A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2

genomics more details view paper
  • Downloaded 3,180 times
  • Download rankings, all-time:
    • Site-wide: 3,930
    • In genomics: 436
  • Year to date:
    • Site-wide: 344
  • Since beginning of last month:
    • Site-wide: 307

Single-cell profiles of retinal neurons differing in resilience to injury reveal neuroprotective genes

neuroscience more details view paper
  • Downloaded 3,020 times
  • Download rankings, all-time:
    • Site-wide: 4,222
    • In neuroscience: 362
  • Year to date:
    • Site-wide: 8,564
  • Since beginning of last month:
    • Site-wide: 11,632

Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

immunology more details view paper
  • Downloaded 2,846 times
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    • Site-wide: 4,572
    • In immunology: 134
  • Year to date:
    • Site-wide: 9,564
  • Since beginning of last month:
    • Site-wide: 14,619

Leveraging polygenic enrichments of gene features to predict genes underlying complex traits and diseases

genetic and genomic medicine more details view paper
  • Downloaded 2,653 times
  • Download rankings, all-time:
    • Site-wide: 5,070
    • In genetic and genomic medicine: 18
  • Year to date:
    • Site-wide: 1,690
  • Since beginning of last month:
    • Site-wide: 1,158

Compressed sensing for imaging transcriptomics

molecular biology more details view paper
  • Downloaded 2,469 times
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    • Site-wide: 5,665
    • In molecular biology: 126
  • Year to date:
    • Site-wide: 4,585
  • Since beginning of last month:
    • Site-wide: 4,460

Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

immunology more details view paper
  • Downloaded 2,421 times
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    • Site-wide: 5,828
    • In immunology: 179
  • Year to date:
    • Site-wide: 57,579
  • Since beginning of last month:
    • Site-wide: 71,214

In Silico Modeling of Metabolic State in Single Th17 Cells Reveals Novel Regulators of Inflammation and Autoimmunity

genomics more details view paper
  • Downloaded 2,409 times
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    • Site-wide: 5,865
    • In genomics: 657
  • Year to date:
    • Site-wide: 2,465
  • Since beginning of last month:
    • Site-wide: 2,721

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

neuroscience more details view paper
  • Downloaded 2,394 times
  • Download rankings, all-time:
    • Site-wide: 5,915
    • In neuroscience: 551
  • Year to date:
    • Site-wide: 101,710
  • Since beginning of last month:
    • Site-wide: 122,252

Identifying disease-critical cell types and cellular processes across the human body by integration of single-cell profiles and human genetics

genomics more details view paper
  • Downloaded 2,323 times
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    • Site-wide: 6,196
    • In genomics: 696
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    • Site-wide: 496
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    • Site-wide: 486

Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper
  • Downloaded 2,273 times
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    • Site-wide: 6,391
    • In cell biology: 132
  • Year to date:
    • Site-wide: 14,742
  • Since beginning of last month:
    • Site-wide: 16,230

T helper cells modulate intestinal stem cell renewal and differentiation

immunology more details view paper
  • Downloaded 2,270 times
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    • Site-wide: 6,398
    • In immunology: 194
  • Year to date:
    • Site-wide: 65,104
  • Since beginning of last month:
    • Site-wide: 88,575

Multiplexed single-cell profiling of post-perturbation transcriptional responses to define cancer vulnerabilities and therapeutic mechanism of action

cancer biology more details view paper
  • Downloaded 2,149 times
  • Download rankings, all-time:
    • Site-wide: 6,931
    • In cancer biology: 105
  • Year to date:
    • Site-wide: 27,797
  • Since beginning of last month:
    • Site-wide: 35,056

Mapping multicellular programs from single-cell profiles

systems biology more details view paper
  • Downloaded 2,098 times
  • Download rankings, all-time:
    • Site-wide: 7,176
    • In systems biology: 128
  • Year to date:
    • Site-wide: 4,126
  • Since beginning of last month:
    • Site-wide: 3,720

Longitudinal single cell profiling of regulatory T cells identifies IL-33 as a driver of tumor immunosuppression

cancer biology more details view paper
  • Downloaded 2,087 times
  • Download rankings, all-time:
    • Site-wide: 7,228
    • In cancer biology: 114
  • Year to date:
    • Site-wide: 26,434
  • Since beginning of last month:
    • Site-wide: 25,695

Landscape of X chromosome inactivation across human tissues

genomics more details view paper
  • Downloaded 2,065 times
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    • Site-wide: 7,336
    • In genomics: 799
  • Year to date:
    • Site-wide: 72,509
  • Since beginning of last month:
    • Site-wide: 55,086

Massively parallel phenotyping of variant impact in cancer with Perturb-seq reveals a shift in the spectrum of cell states induced by somatic mutations

genomics more details view paper
  • Downloaded 2,035 times
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    • Site-wide: 7,494
    • In genomics: 808
  • Year to date:
    • Site-wide: 3,454
  • Since beginning of last month:
    • Site-wide: 11,913

Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics

genomics more details view paper
  • Downloaded 1,983 times
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    • Site-wide: 7,791
    • In genomics: 845
  • Year to date:
    • Site-wide: 49,588
  • Since beginning of last month:
    • Site-wide: 56,777

A quantitative model for characterizing the evolutionary history of mammalian gene expression

genomics more details view paper
  • Downloaded 1,924 times
  • Download rankings, all-time:
    • Site-wide: 8,148
    • In genomics: 878
  • Year to date:
    • Site-wide: 100,503
  • Since beginning of last month:
    • Site-wide: 120,440

SM-Omics: An automated platform for high-throughput spatial multi-omics

genomics more details view paper
  • Downloaded 1,919 times
  • Download rankings, all-time:
    • Site-wide: 8,176
    • In genomics: 881
  • Year to date:
    • Site-wide: 4,633
  • Since beginning of last month:
    • Site-wide: 8,173

Single-nucleus RNA-Seq reveals a new type of brown adipocyte regulating thermogenesis

cell biology more details view paper
  • Downloaded 1,881 times
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    • Site-wide: 8,436
    • In cell biology: 204
  • Year to date:
    • Site-wide: 12,016
  • Since beginning of last month:
    • Site-wide: 12,859

Combinatorial prediction of marker panels from single-cell transcriptomic data

bioinformatics more details view paper
  • Downloaded 1,855 times
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    • Site-wide: 8,607
    • In bioinformatics: 1,031
  • Year to date:
    • Site-wide: 65,710
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    • Site-wide: 71,242

A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis-regulatory DNA sequences

genomics more details view paper
  • Downloaded 1,842 times
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    • Site-wide: 8,703
    • In genomics: 941
  • Year to date:
    • Site-wide: 665
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    • Site-wide: 1,743

Multicellular immune hubs and their organization in MMRd and MMRp colorectal cancer

cancer biology more details view paper
  • Downloaded 1,839 times
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    • Site-wide: 8,725
    • In cancer biology: 152
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    • Site-wide: 666
  • Since beginning of last month:
    • Site-wide: 1,042

Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

bioinformatics more details view paper
  • Downloaded 1,827 times
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    • Site-wide: 8,805
    • In bioinformatics: 1,062
  • Year to date:
    • Site-wide: 17,139
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    • Site-wide: 17,121

Multi-modal pooled Perturb-CITE-Seq screens in patient models define novel mechanisms of cancer immune evasion

genomics more details view paper
  • Downloaded 1,751 times
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    • Site-wide: 9,398
    • In genomics: 1,019
  • Year to date:
    • Site-wide: 3,769
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    • Site-wide: 12,471

Human brain organoids reveal accelerated development of cortical neuron classes as a shared feature of autism risk genes

developmental biology more details view paper
  • Downloaded 1,749 times
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    • Site-wide: 9,410
    • In developmental biology: 124
  • Year to date:
    • Site-wide: 2,329
  • Since beginning of last month:
    • Site-wide: 3,303

Acquired FGFR and FGF alterations confer resistance to estrogen receptor (ER) targeted therapy in ER+ metastatic breast cancer

cancer biology more details view paper
  • Downloaded 1,736 times
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    • Site-wide: 9,521
    • In cancer biology: 172
  • Year to date:
    • Site-wide: 18,979
  • Since beginning of last month:
    • Site-wide: 16,506

scSVA: an interactive tool for big data visualization and exploration in single-cell omics

bioinformatics more details view paper
  • Downloaded 1,733 times
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    • Site-wide: 9,557
    • In bioinformatics: 1,143
  • Year to date:
    • Site-wide: 42,513
  • Since beginning of last month:
    • Site-wide: 46,995

GeNets: A unified web platform for network-based analyses of genomic data

genomics more details view paper
  • Downloaded 1,697 times
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    • Site-wide: 9,856
    • In genomics: 1,067
  • Year to date:
    • Site-wide: 48,636
  • Since beginning of last month:
    • Site-wide: 45,249

Metabolic and Epigenomic Regulation of Th17/Treg Balance by the Polyamine Pathway

immunology more details view paper
  • Downloaded 1,633 times
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    • Site-wide: 10,402
    • In immunology: 306
  • Year to date:
    • Site-wide: 4,976
  • Since beginning of last month:
    • Site-wide: 6,974

Single-cell multimodal profiling of proteins and chromatin accessibility using PHAGE-ATAC

genomics more details view paper
  • Downloaded 1,561 times
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    • Site-wide: 11,113
    • In genomics: 1,191
  • Year to date:
    • Site-wide: 5,788
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    • Site-wide: 8,958

Opposing immune and genetic forces shape oncogenic programs in synovial sarcoma

cancer biology more details view paper
  • Downloaded 1,495 times
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    • Site-wide: 11,810
    • In cancer biology: 243
  • Year to date:
    • Site-wide: 15,792
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    • Site-wide: 46,209

BROCKMAN: Deciphering variance in epigenomic regulators by k-mer factorization

genomics more details view paper
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Cycling cancer persister cells arise from lineages with distinct transcriptional and metabolic programs

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Genetic predisposition to myeloproliferative neoplasms implicates hematopoietic stem cell biology

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Single cell profiling of immature human postnatal thymocytes resolves the complexity of intra-thymic lineage differentiation and thymus seeding precursors.

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An endogenous glucocorticoid-cytokine signaling circuit promotes CD8+ T cell dysfunction in the tumor microenvironment

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A cell-free antibody engineering platform rapidly generates SARS-CoV-2 neutralizing antibodies

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CELL ATLAS OF THE HUMAN FOVEA AND PERIPHERAL RETINA

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MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging

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Single Cell, Single Nucleus and Spatial RNA Sequencing of the Human Liver Identifies Hepatic Stellate Cell and Cholangiocyte Heterogeneity

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Shuffle-Seq: En masse combinatorial encoding for n-way genetic interaction screens

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Three-dimensional spatial transcriptomics uncovers cell type dynamics in the rheumatoid arthritis synovium

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Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

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Conservation and divergence in modules of the transcriptional programs of the human and mouse immune systems

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Cell Atlas of Aqueous Humor Outflow Pathways in Eyes of Humans and Four Model Species Provides Insights into Glaucoma Pathogenesis

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Multi-cellular communities are perturbed in the aging human brain and with Alzheimer's disease

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L1CAM is not Associated with Extracellular Vesicles in Human Cerebrospinal Fluid or Plasma

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Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs

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Transcriptional mediators of treatment resistance in lethal prostate cancer

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RAAS blockade, kidney disease, and expression of ACE2, the entry receptor for SARS-CoV-2, in kidney epithelial and endothelial cells

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Regulatory network controlling tumor-promoting inflammation in human cancers

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MAUDE: Inferring expression changes in sorting-based CRISPR screens

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Dietary suppression of MHC-II expression in intestinal stem cells enhances intestinal tumorigenesis

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GWAS of stool frequency reveals genes, pathways, and cell types relevant to human gastrointestinal motility and irritable bowel syndrome

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Parental-fetal interplay of immune genes leads to intrauterine growth restriction

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