Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 60,222 bioRxiv papers from 267,720 authors.

Author: Aviv Regev

Rankings

  • All-time downloads: 125,220 (rank: 45 out of 267,720)
  • Categories:
    • bioengineering: 7,960 (rank: 18 (tie) out of 6,528)
    • bioinformatics: 19,038 (rank: 83 out of 23,839)
    • cancer biology: 2,154 (rank: 800 (tie) out of 16,249)
    • cell biology: 13,253 (rank: 16 (tie) out of 17,570)
    • developmental biology: 1,732 (rank: 478 (tie) out of 10,008)
    • evolutionary biology: 673 (rank: 4,987 (tie) out of 14,790)
    • genomics: 50,381 (rank: 103 out of 31,222)
    • immunology: 5,284 (rank: 92 out of 11,863)
    • molecular biology: 8,831 (rank: 30 out of 12,047)
    • neuroscience: 12,853 (rank: 196 out of 43,948)
    • systems biology: 3,061 (rank: 388 (tie) out of 8,141)

Downloads per author, site-wide

Preprints

Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper

No bioRxiv download data for this paper yet.

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,645 times
  • Download rankings, all-time:
    • Site-wide: 77 out of 60,222
    • In cell biology: 2 out of 2,865
  • Year to date:
    • Site-wide: 5,100 out of 60,222
  • Since beginning of last month:
    • Site-wide: 7,930 out of 60,222

Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming.

bioinformatics more details view paper
  • Downloaded 10,356 times
  • Download rankings, all-time:
    • Site-wide: 96 out of 60,222
    • In bioinformatics: 17 out of 6,078
  • Year to date:
    • Site-wide: 293 out of 60,222
  • Since beginning of last month:
    • Site-wide: 896 out of 60,222

DNA microscopy: Optics-free spatio-genetic imaging by a stand-alone chemical reaction

bioengineering more details view paper
  • Downloaded 7,960 times
  • Download rankings, all-time:
    • Site-wide: 159 out of 60,222
    • In bioengineering: 3 out of 1,172
  • Year to date:
    • Site-wide: 101 out of 60,222
  • Since beginning of last month:
    • Site-wide: 811 out of 60,222

Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

genomics more details view paper
  • Downloaded 6,767 times
  • Download rankings, all-time:
    • Site-wide: 221 out of 60,222
    • In genomics: 63 out of 4,168
  • Year to date:
    • Site-wide: 36 out of 60,222
  • Since beginning of last month:
    • Site-wide: 95 out of 60,222

DroNc-Seq: Deciphering cell types in human archived brain tissues by massively-parallel single nucleus RNA-seq

genomics more details view paper
  • Downloaded 6,460 times
  • Download rankings, all-time:
    • Site-wide: 241 out of 60,222
    • In genomics: 69 out of 4,168
  • Year to date:
    • Site-wide: 7,905 out of 60,222
  • Since beginning of last month:
    • Site-wide: 9,091 out of 60,222

STAR-Fusion: Fast and Accurate Fusion Transcript Detection from RNA-Seq

bioinformatics more details view paper
  • Downloaded 5,763 times
  • Download rankings, all-time:
    • Site-wide: 306 out of 60,222
    • In bioinformatics: 58 out of 6,078
  • Year to date:
    • Site-wide: 804 out of 60,222
  • Since beginning of last month:
    • Site-wide: 1,352 out of 60,222

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper
  • Downloaded 5,707 times
  • Download rankings, all-time:
    • Site-wide: 310 out of 60,222
    • In genomics: 83 out of 4,168
  • Year to date:
    • Site-wide: 51 out of 60,222
  • Since beginning of last month:
    • Site-wide: 62 out of 60,222

Deciphering eukaryotic cis-regulatory logic with 100 million random promoters

genomics more details view paper
  • Downloaded 4,923 times
  • Download rankings, all-time:
    • Site-wide: 392 out of 60,222
    • In genomics: 103 out of 4,168
  • Year to date:
    • Site-wide: 1,936 out of 60,222
  • Since beginning of last month:
    • Site-wide: 1,835 out of 60,222

Genetic determinants of co-accessible chromatin regions in T cell activation across humans

genomics more details view paper
  • Downloaded 4,576 times
  • Download rankings, all-time:
    • Site-wide: 452 out of 60,222
    • In genomics: 120 out of 4,168
  • Year to date:
    • Site-wide: 10,441 out of 60,222
  • Since beginning of last month:
    • Site-wide: 13,064 out of 60,222

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector

molecular biology more details view paper
  • Downloaded 4,360 times
  • Download rankings, all-time:
    • Site-wide: 511 out of 60,222
    • In molecular biology: 11 out of 1,850
  • Year to date:
    • Site-wide: 17,364 out of 60,222
  • Since beginning of last month:
    • Site-wide: 17,345 out of 60,222

High-density spatial transcriptomics arrays for in situ tissue profiling

genomics more details view paper
  • Downloaded 4,358 times
  • Download rankings, all-time:
    • Site-wide: 512 out of 60,222
    • In genomics: 133 out of 4,168
  • Year to date:
    • Site-wide: 76 out of 60,222
  • Since beginning of last month:
    • Site-wide: 146 out of 60,222

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

genomics more details view paper
  • Downloaded 4,232 times
  • Download rankings, all-time:
    • Site-wide: 539 out of 60,222
    • In genomics: 142 out of 4,168
  • Year to date:
    • Site-wide: 166 out of 60,222
  • Since beginning of last month:
    • Site-wide: 2,611 out of 60,222

High-resolution interrogation of functional elements in the noncoding genome

molecular biology more details view paper
  • Downloaded 3,742 times
  • Download rankings, all-time:
    • Site-wide: 691 out of 60,222
    • In molecular biology: 16 out of 1,850
  • Year to date:
    • Site-wide: 35,676 out of 60,222
  • Since beginning of last month:
    • Site-wide: 23,880 out of 60,222

Div-Seq: A single nucleus RNA-Seq method reveals dynamics of rare adult newborn neurons in the CNS

neuroscience more details view paper
  • Downloaded 3,502 times
  • Download rankings, all-time:
    • Site-wide: 788 out of 60,222
    • In neuroscience: 104 out of 10,621
  • Year to date:
    • Site-wide: 28,408 out of 60,222
  • Since beginning of last month:
    • Site-wide: 33,755 out of 60,222

Nuclei multiplexing with barcoded antibodies for single-nucleus genomics

genomics more details view paper
  • Downloaded 3,227 times
  • Download rankings, all-time:
    • Site-wide: 906 out of 60,222
    • In genomics: 231 out of 4,168
  • Year to date:
    • Site-wide: 275 out of 60,222
  • Since beginning of last month:
    • Site-wide: 953 out of 60,222

Composite measurements and molecular compressed sensing for highly efficient transcriptomics

systems biology more details view paper
  • Downloaded 3,061 times
  • Download rankings, all-time:
    • Site-wide: 992 out of 60,222
    • In systems biology: 20 out of 1,707
  • Year to date:
    • Site-wide: 20,725 out of 60,222
  • Since beginning of last month:
    • Site-wide: 24,960 out of 60,222

A single cell-based atlas of human microglial states reveals associations with neurological disorders and histopathological features of the aging brain

neuroscience more details view paper
  • Downloaded 2,815 times
  • Download rankings, all-time:
    • Site-wide: 1,175 out of 60,222
    • In neuroscience: 163 out of 10,621
  • Year to date:
    • Site-wide: 678 out of 60,222
  • Since beginning of last month:
    • Site-wide: 1,798 out of 60,222

Single-cell transcriptomics of the aged mouse brain reveals convergent, divergent and unique aging signatures

neuroscience more details view paper
  • Downloaded 2,739 times
  • Download rankings, all-time:
    • Site-wide: 1,245 out of 60,222
    • In neuroscience: 172 out of 10,621
  • Year to date:
    • Site-wide: 425 out of 60,222
  • Since beginning of last month:
    • Site-wide: 688 out of 60,222

Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli are Altered with Age

immunology more details view paper
  • Downloaded 2,043 times
  • Download rankings, all-time:
    • Site-wide: 2,055 out of 60,222
    • In immunology: 26 out of 1,466
  • Year to date:
    • Site-wide: 20,411 out of 60,222
  • Since beginning of last month:
    • Site-wide: 19,147 out of 60,222

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

neuroscience more details view paper
  • Downloaded 1,887 times
  • Download rankings, all-time:
    • Site-wide: 2,373 out of 60,222
    • In neuroscience: 345 out of 10,621
  • Year to date:
    • Site-wide: 1,399 out of 60,222
  • Since beginning of last month:
    • Site-wide: 5,893 out of 60,222

T helper cells modulate intestinal stem cell renewal and differentiation

immunology more details view paper
  • Downloaded 1,879 times
  • Download rankings, all-time:
    • Site-wide: 2,392 out of 60,222
    • In immunology: 30 out of 1,466
  • Year to date:
    • Site-wide: 7,023 out of 60,222
  • Since beginning of last month:
    • Site-wide: 11,106 out of 60,222

Landscape of X chromosome inactivation across human tissues

genomics more details view paper
  • Downloaded 1,836 times
  • Download rankings, all-time:
    • Site-wide: 2,482 out of 60,222
    • In genomics: 511 out of 4,168
  • Year to date:
    • Site-wide: 35,143 out of 60,222
  • Since beginning of last month:
    • Site-wide: 41,849 out of 60,222

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 1,732 times
  • Download rankings, all-time:
    • Site-wide: 2,756 out of 60,222
    • In developmental biology: 42 out of 1,790
  • Year to date:
    • Site-wide: 450 out of 60,222
  • Since beginning of last month:
    • Site-wide: 563 out of 60,222

The enteric nervous system of the human and mouse colon at a single-cell resolution

genomics more details view paper
  • Downloaded 1,711 times
  • Download rankings, all-time:
    • Site-wide: 2,812 out of 60,222
    • In genomics: 562 out of 4,168
  • Year to date:
    • Site-wide: 458 out of 60,222
  • Since beginning of last month:
    • Site-wide: 25 out of 60,222

A quantitative model for characterizing the evolutionary history of mammalian gene expression

genomics more details view paper
  • Downloaded 1,692 times
  • Download rankings, all-time:
    • Site-wide: 2,868 out of 60,222
    • In genomics: 576 out of 4,168
  • Year to date:
    • Site-wide: 11,532 out of 60,222
  • Since beginning of last month:
    • Site-wide: 19,087 out of 60,222

A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia demonstrates cancer-crosstalk with stroma to impair normal tissue function

cell biology more details view paper
  • Downloaded 1,608 times
  • Download rankings, all-time:
    • Site-wide: 3,104 out of 60,222
    • In cell biology: 78 out of 2,865
  • Year to date:
    • Site-wide: 522 out of 60,222
  • Since beginning of last month:
    • Site-wide: 6,861 out of 60,222

GeNets: A unified web platform for network-based analyses of genomic data

genomics more details view paper
  • Downloaded 1,469 times
  • Download rankings, all-time:
    • Site-wide: 3,621 out of 60,222
    • In genomics: 679 out of 4,168
  • Year to date:
    • Site-wide: 44,612 out of 60,222
  • Since beginning of last month:
    • Site-wide: 53,920 out of 60,222

Skin inflammation driven by differentiation of quiescent tissue-resident ILCs into a spectrum of pathogenic effectors

immunology more details view paper
  • Downloaded 1,362 times
  • Download rankings, all-time:
    • Site-wide: 4,123 out of 60,222
    • In immunology: 48 out of 1,466
  • Year to date:
    • Site-wide: 1,840 out of 60,222
  • Since beginning of last month:
    • Site-wide: 4,541 out of 60,222

Longitudinal single cell profiling of regulatory T cells identifies IL-33 as a driver of tumor immunosuppression

cancer biology more details view paper
  • Downloaded 1,336 times
  • Download rankings, all-time:
    • Site-wide: 4,234 out of 60,222
    • In cancer biology: 109 out of 1,975
  • Year to date:
    • Site-wide: 751 out of 60,222
  • Since beginning of last month:
    • Site-wide: 2,607 out of 60,222

Kidney organoid reproducibility across multiple human iPSC lines and diminished off target cells after transplantation revealed by single cell transcriptomics

genomics more details view paper
  • Downloaded 1,273 times
  • Download rankings, all-time:
    • Site-wide: 4,567 out of 60,222
    • In genomics: 818 out of 4,168
  • Year to date:
    • Site-wide: 815 out of 60,222
  • Since beginning of last month:
    • Site-wide: 4,983 out of 60,222

A cellular and spatial map of the choroid plexus across brain ventricles and ages

neuroscience more details view paper
  • Downloaded 1,204 times
  • Download rankings, all-time:
    • Site-wide: 4,988 out of 60,222
    • In neuroscience: 772 out of 10,621
  • Year to date:
    • Site-wide: 915 out of 60,222
  • Since beginning of last month:
    • Site-wide: 677 out of 60,222

scSVA: an interactive tool for big data visualization and exploration in single-cell omics

bioinformatics more details view paper
  • Downloaded 1,176 times
  • Download rankings, all-time:
    • Site-wide: 5,201 out of 60,222
    • In bioinformatics: 1,005 out of 6,078
  • Year to date:
    • Site-wide: 974 out of 60,222
  • Since beginning of last month:
    • Site-wide: 4,928 out of 60,222

Combinatorial prediction of gene-marker panels from single-cell transcriptomic data.

bioinformatics more details view paper
  • Downloaded 1,146 times
  • Download rankings, all-time:
    • Site-wide: 5,446 out of 60,222
    • In bioinformatics: 1,043 out of 6,078
  • Year to date:
    • Site-wide: 1,026 out of 60,222
  • Since beginning of last month:
    • Site-wide: 1,889 out of 60,222

BROCKMAN: Deciphering variance in epigenomic regulators by k-mer factorization

genomics more details view paper
  • Downloaded 1,140 times
  • Download rankings, all-time:
    • Site-wide: 5,497 out of 60,222
    • In genomics: 935 out of 4,168
  • Year to date:
    • Site-wide: 31,307 out of 60,222
  • Since beginning of last month:
    • Site-wide: 26,676 out of 60,222

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

genomics more details view paper
  • Downloaded 768 times
  • Download rankings, all-time:
    • Site-wide: 10,259 out of 60,222
    • In genomics: 1,484 out of 4,168
  • Year to date:
    • Site-wide: 35,863 out of 60,222
  • Since beginning of last month:
    • Site-wide: 38,546 out of 60,222

Compressed sensing for imaging transcriptomics

molecular biology more details view paper
  • Downloaded 729 times
  • Download rankings, all-time:
    • Site-wide: 11,042 out of 60,222
    • In molecular biology: 311 out of 1,850
  • Year to date:
    • Site-wide: 2,239 out of 60,222
  • Since beginning of last month:
    • Site-wide: 113 out of 60,222

Single-cell profiles of retinal neurons differing in resilience to injury reveal neuroprotective genes

neuroscience more details view paper
  • Downloaded 706 times
  • Download rankings, all-time:
    • Site-wide: 11,547 out of 60,222
    • In neuroscience: 1,842 out of 10,621
  • Year to date:
    • Site-wide: 2,352 out of 60,222
  • Since beginning of last month:
    • Site-wide: 424 out of 60,222

Evolutionary analysis across mammals reveals distinct classes of long noncoding RNAs

evolutionary biology more details view paper
  • Downloaded 673 times
  • Download rankings, all-time:
    • Site-wide: 12,396 out of 60,222
    • In evolutionary biology: 887 out of 4,111
  • Year to date:
    • Site-wide: 52,147 out of 60,222
  • Since beginning of last month:
    • Site-wide: 52,378 out of 60,222

Conservation and divergence in modules of the transcriptional programs of the human and mouse immune systems

bioinformatics more details view paper
  • Downloaded 597 times
  • Download rankings, all-time:
    • Site-wide: 14,640 out of 60,222
    • In bioinformatics: 2,328 out of 6,078
  • Year to date:
    • Site-wide: 23,585 out of 60,222
  • Since beginning of last month:
    • Site-wide: 36,073 out of 60,222

Regulatory network controlling tumor-promoting inflammation in human cancers

cancer biology more details view paper
  • Downloaded 440 times
  • Download rankings, all-time:
    • Site-wide: 21,402 out of 60,222
    • In cancer biology: 649 out of 1,975
  • Year to date:
    • Site-wide: 22,196 out of 60,222
  • Since beginning of last month:
    • Site-wide: 21,668 out of 60,222

Opposing immune and genetic forces shape oncogenic programs in synovial sarcoma

cancer biology more details view paper
  • Downloaded 378 times
  • Download rankings, all-time:
    • Site-wide: 25,282 out of 60,222
    • In cancer biology: 773 out of 1,975
  • Year to date:
    • Site-wide: 6,808 out of 60,222
  • Since beginning of last month:
    • Site-wide: 374 out of 60,222

A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors

genomics more details view paper
  • Downloaded 242 times
  • Download rankings, all-time:
    • Site-wide: 37,342 out of 60,222
    • In genomics: 3,317 out of 4,168
  • Year to date:
    • Site-wide: 13,684 out of 60,222
  • Since beginning of last month:
    • Site-wide: 876 out of 60,222

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News