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Author: Mauricio Barahona

Rankings

  • All-time downloads: 15,699 (rank: 20,596 (tie) )
  • Categories:
    • bioinformatics: 2,730 (rank: 7,457 (tie) )
    • biophysics: 2,349 (rank: 3,019 (tie) )
    • epidemiology: 1,810 (rank: 9,937 (tie) )
    • health informatics: 424 (rank: 3,571 (tie) )
    • infectious diseases: 338 (rank: 60,028 (tie) )
    • neuroscience: 3,035 (rank: 11,187 (tie) )
    • pathology: 337 (rank: 6,867 (tie) )
    • public and global health: 132 (rank: 18,880 (tie) )
    • synthetic biology: 1,048 (rank: 3,092 (tie) )
    • systems biology: 2,619 (rank: 2,264 (tie) )

Downloads per author, site-wide

Preprints

Long-term, layer-specific reverberant activity in the mouse somatosensory cortex following sensory stimulation

neuroscience more details view paper
  • Downloaded 1,261 times
  • Download rankings, all-time:
    • Site-wide: 26,811
    • In neuroscience: 3,209
  • Year to date:
    • Site-wide: 123,211
  • Since beginning of last month:
    • Site-wide: 85,325

Computational Re-Design of Synthetic Genetic Oscillators for Independent Amplitude and Frequency Modulation

synthetic biology more details view paper
  • Downloaded 1,060 times
  • Download rankings, all-time:
    • Site-wide: 35,072
    • In synthetic biology: 423
  • Year to date:
    • Site-wide: 203,738
  • Since beginning of last month:
    • Site-wide: 173,071

Modelling the Dynamics of Biological Systems with the Geometric Hidden Markov Model

bioinformatics more details view paper
  • Downloaded 1,030 times
  • Download rankings, all-time:
    • Site-wide: 36,687
    • In bioinformatics: 3,769
  • Year to date:
    • Site-wide: 154,564
  • Since beginning of last month:
    • Site-wide: 98,824

Defining Hospital Catchment Areas Using Multiscale Community Detection: A Case Study for Planned Orthopaedic Care in England

epidemiology more details view paper
  • Downloaded 993 times
  • Download rankings, all-time:
    • Site-wide: 38,755
    • In epidemiology: 2,078
  • Year to date:
    • Site-wide: 74,045
  • Since beginning of last month:
    • Site-wide: 65,978

Allosteric hotspots in the main protease of SARS-CoV-2

bioinformatics more details view paper
  • Downloaded 804 times
  • Download rankings, all-time:
    • Site-wide: 53,511
    • In bioinformatics: 5,222
  • Year to date:
    • Site-wide: 63,475
  • Since beginning of last month:
    • Site-wide: 104,540

Non-invasive Amelioration of Essential Tremor via Phase-Locked Disruption of its Temporal Coherence

neuroscience more details view paper
  • Downloaded 719 times
  • Download rankings, all-time:
    • Site-wide: 62,888
    • In neuroscience: 8,744
  • Year to date:
    • Site-wide: 90,722
  • Since beginning of last month:
    • Site-wide: 119,024

Flux-dependent graphs for metabolic networks

systems biology more details view paper
  • Downloaded 710 times
  • Download rankings, all-time:
    • Site-wide: 64,105
    • In systems biology: 1,262
  • Year to date:
    • Site-wide: 123,892
  • Since beginning of last month:
    • Site-wide: 115,560

Characterising contact in disease outbreaks via a network model of spatial-temporal proximity

epidemiology more details view paper
  • Downloaded 640 times
  • Download rankings, all-time:
    • Site-wide: 74,004
    • In epidemiology: 3,357
  • Year to date:
    • Site-wide: 27,563
  • Since beginning of last month:
    • Site-wide: 110,225

Unsupervised graph-based learning predicts mutations that alter protein dynamics

biophysics more details view paper
  • Downloaded 607 times
  • Download rankings, all-time:
    • Site-wide: 79,133
    • In biophysics: 2,751
  • Year to date:
    • Site-wide: 114,588
  • Since beginning of last month:
    • Site-wide: 122,781

Stochastic modelling reveals mechanisms of metabolic heterogeneity

systems biology more details view paper
  • Downloaded 603 times
  • Download rankings, all-time:
    • Site-wide: 79,794
    • In systems biology: 1,573
  • Year to date:
    • Site-wide: 208,300
  • Since beginning of last month:
    • Site-wide: 136,575

Learning compositional sequences with multiple time scales through a hierarchical network of spiking neurons

neuroscience more details view paper
  • Downloaded 580 times
  • Download rankings, all-time:
    • Site-wide: 83,843
    • In neuroscience: 11,637
  • Year to date:
    • Site-wide: 179,712
  • Since beginning of last month:
    • Site-wide: 160,872

Stochastic models of gene transcription with upstream drives: exact solution and sample path characterization

biophysics more details view paper
  • Downloaded 527 times
  • Download rankings, all-time:
    • Site-wide: 94,281
    • In biophysics: 3,349
  • Year to date:
    • Site-wide: 175,912
  • Since beginning of last month:
    • Site-wide: 136,085

hcga: Highly Comparative Graph Analysis for network phenotyping

systems biology more details view paper
  • Downloaded 506 times
  • Download rankings, all-time:
    • Site-wide: 98,760
    • In systems biology: 1,982
  • Year to date:
    • Site-wide: 176,529
  • Since beginning of last month:
    • Site-wide: 165,245

Allostery and cooperativity in multimeric proteins: bond-to-bond propensities in ATCase

biophysics more details view paper
  • Downloaded 490 times
  • Download rankings, all-time:
    • Site-wide: 102,517
    • In biophysics: 3,676
  • Year to date:
    • Site-wide: 191,068
  • Since beginning of last month:
    • Site-wide: 138,080

Predicting hospital-onset COVID-19 infections using dynamic networks of patient contacts: an observational study

health informatics more details view paper
  • Downloaded 466 times
  • Download rankings, all-time:
    • Site-wide: 108,131
    • In health informatics: 488
  • Year to date:
    • Site-wide: 45,330
  • Since beginning of last month:
    • Site-wide: 42,290

Inferring high-dimensional pathways of trait acquisition in evolution and disease

bioinformatics more details view paper
  • Downloaded 445 times
  • Download rankings, all-time:
    • Site-wide: 113,177
    • In bioinformatics: 9,212
  • Year to date:
    • Site-wide: 205,918
  • Since beginning of last month:
    • Site-wide: 157,713

Learning spatiotemporal signals using a recurrent spiking network that discretizes time

neuroscience more details view paper
  • Downloaded 418 times
  • Download rankings, all-time:
    • Site-wide: 120,162
    • In neuroscience: 17,072
  • Year to date:
    • Site-wide: 185,389
  • Since beginning of last month:
    • Site-wide: 157,388

Dimensionality reduction and data integration for scRNA-seq data based on integrative hierarchical Poisson factorisation

bioinformatics more details view paper
  • Downloaded 411 times
  • Download rankings, all-time:
    • Site-wide: 122,073
    • In bioinformatics: 12,005
  • Year to date:
    • Site-wide: 55,571
  • Since beginning of last month:
    • Site-wide: 71,391

Prediction of gene essentiality using machine learning and genome-scale metabolic models

systems biology more details view paper
  • Downloaded 382 times
  • Download rankings, all-time:
    • Site-wide: 130,033
    • In systems biology: 2,912
  • Year to date:
    • Site-wide: 16,904
  • Since beginning of last month:
    • Site-wide: 25,068

Integrated patient network and genomic plasmid analysis reveal a regional, multi-species outbreak of carbapenemase-producing Enterobacterales carrying both blaIMP and mcr-9 genes

infectious diseases more details view paper
  • Downloaded 380 times
  • Download rankings, all-time:
    • Site-wide: 130,657
    • In infectious diseases: 6,382
  • Year to date:
    • Site-wide: 42,888
  • Since beginning of last month:
    • Site-wide: 43,230

Cellular memory enhances bacterial chemotactic navigation in rugged environments

biophysics more details view paper
  • Downloaded 372 times
  • Download rankings, all-time:
    • Site-wide: 132,949
    • In biophysics: 4,938
  • Year to date:
    • Site-wide: 175,296
  • Since beginning of last month:
    • Site-wide: 172,188

Precision identification and prediction of high mortality phenotypes and disease progression pathways in severe malaria without requiring longitudinal data

pathology more details view paper
  • Downloaded 358 times
  • Download rankings, all-time:
    • Site-wide: 137,274
    • In pathology: 737
  • Year to date:
    • Site-wide: 195,618
  • Since beginning of last month:
    • Site-wide: 140,695

GlnK facilitates the dynamic regulation of bacterial nitrogen assimilation

systems biology more details view paper
  • Downloaded 329 times
  • Download rankings, all-time:
    • Site-wide: 145,894
    • In systems biology: 2,890
  • Year to date:
    • Site-wide: 205,953
  • Since beginning of last month:
    • Site-wide: 158,178

Collective search with finite perception: transient dynamics and search efficiency

biophysics more details view paper
  • Downloaded 291 times
  • Download rankings, all-time:
    • Site-wide: 156,945
    • In biophysics: 5,795
  • Year to date:
    • Site-wide: 205,448
  • Since beginning of last month:
    • Site-wide: 200,164

Similarity Measure for Sparse Time Course Data Based on Gaussian Processes

bioinformatics more details view paper
  • Downloaded 281 times
  • Download rankings, all-time:
    • Site-wide: 160,062
    • In bioinformatics: 12,010
  • Year to date:
    • Site-wide: 84,568
  • Since beginning of last month:
    • Site-wide: 186,741

Guiding Interoperable Electronic Health Records Through Patient Sharing Networks

epidemiology more details view paper
  • Downloaded 275 times
  • Download rankings, all-time:
    • Site-wide: 161,883
    • In epidemiology: 6,523
  • Year to date:
    • Site-wide: 191,773
  • Since beginning of last month:
    • Site-wide: 85,148

Computation of single-cell metabolite distributions using mixture models

systems biology more details view paper
  • Downloaded 238 times
  • Download rankings, all-time:
    • Site-wide: 172,193
    • In systems biology: 3,333
  • Year to date:
    • Site-wide: 190,355
  • Since beginning of last month:
    • Site-wide: 193,485

Long- and short-term history effects in a spiking network model of statistical learning

neuroscience more details view paper
  • Downloaded 184 times
  • Download rankings, all-time:
    • Site-wide: 185,562
    • In neuroscience: 26,712
  • Year to date:
    • Site-wide: 102,495
  • Since beginning of last month:
    • Site-wide: 151,729

An edge-based formulation of elastic network models

biophysics more details view paper
  • Downloaded 181 times
  • Download rankings, all-time:
    • Site-wide: 186,061
    • In biophysics: 6,970
  • Year to date:
    • Site-wide: 206,421
  • Since beginning of last month:
    • Site-wide: 192,986

Listening to mental health crisis needs at scale: using Natural Language Processing to understand and evaluate a mental health crisis text messaging service

public and global health more details view paper
  • Downloaded 158 times
  • Download rankings, all-time:
    • Site-wide: 190,874
    • In public and global health: 2,817
  • Year to date:
    • Site-wide: 108,933
  • Since beginning of last month:
    • Site-wide: 170,349

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