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Author: Timothy G Vaughan

Rankings

  • All-time downloads: 92,998 (rank: 1,513 )
  • Categories:
    • bioinformatics: 721 (rank: 21,152 (tie) )
    • epidemiology: 83,984 (rank: 164 )
    • evolutionary biology: 6,309 (rank: 433 )
    • infectious diseases: 1,984 (rank: 17,196 (tie) )

Downloads per author, site-wide

Preprints

Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020

epidemiology more details view paper
  • Downloaded 81,832 times
  • Download rankings, all-time:
    • Site-wide: 67
    • In epidemiology: 14
  • Year to date:
    • Site-wide: 157
  • Since beginning of last month:
    • Site-wide: 1,105

The origin and early spread of SARS-CoV-2 in Europe

infectious diseases more details view paper
  • Downloaded 1,984 times
  • Download rankings, all-time:
    • Site-wide: 8,856
    • In infectious diseases: 1,270
  • Year to date:
    • Site-wide: 31,902
  • Since beginning of last month:
    • Site-wide: 105,759

Estimating epidemic incidence and prevalence from genomic data

epidemiology more details view paper
  • Downloaded 1,403 times
  • Download rankings, all-time:
    • Site-wide: 14,770
    • In epidemiology: 1,005
  • Year to date:
    • Site-wide: 68,396
  • Since beginning of last month:
    • Site-wide: 58,964

Novel Integrative Modeling of Molecules and Morphology across Evolutionary Timescales

evolutionary biology more details view paper
  • Downloaded 1,381 times
  • Download rankings, all-time:
    • Site-wide: 15,120
    • In evolutionary biology: 517
  • Year to date:
    • Site-wide: 20,284
  • Since beginning of last month:
    • Site-wide: 29,593

BEAST 2.5: An Advanced Software Platform for Bayesian Evolutionary Analysis

evolutionary biology more details view paper
  • Downloaded 1,369 times
  • Download rankings, all-time:
    • Site-wide: 15,336
    • In evolutionary biology: 525
  • Year to date:
    • Site-wide: 52,549
  • Since beginning of last month:
    • Site-wide: 82,195

Infectious disease phylodynamics with occurrence data

evolutionary biology more details view paper
  • Downloaded 823 times
  • Download rankings, all-time:
    • Site-wide: 32,156
    • In evolutionary biology: 1,445
  • Year to date:
    • Site-wide: 40,760
  • Since beginning of last month:
    • Site-wide: None

A Multi-State Birth-Death model for Bayesian inference of lineage-specific birth and death rates

evolutionary biology more details view paper
  • Downloaded 813 times
  • Download rankings, all-time:
    • Site-wide: 32,722
    • In evolutionary biology: 1,477
  • Year to date:
    • Site-wide: 93,082
  • Since beginning of last month:
    • Site-wide: None

IcyTree: Rapid browser-based visualization for phylogenetic trees and networks

bioinformatics more details view paper
  • Downloaded 721 times
  • Download rankings, all-time:
    • Site-wide: 38,682
    • In bioinformatics: 4,198
  • Year to date:
    • Site-wide: 131,666
  • Since beginning of last month:
    • Site-wide: None

Improved multi-type birth-death phylodynamic inference in BEAST 2

evolutionary biology more details view paper
  • Downloaded 617 times
  • Download rankings, all-time:
    • Site-wide: 47,336
    • In evolutionary biology: 2,344
  • Year to date:
    • Site-wide: 39,199
  • Since beginning of last month:
    • Site-wide: 62,318

Bayesian inference of ancestral recombination graphs for bacterial populations

evolutionary biology more details view paper
  • Downloaded 600 times
  • Download rankings, all-time:
    • Site-wide: 49,009
    • In evolutionary biology: 2,451
  • Year to date:
    • Site-wide: 121,801
  • Since beginning of last month:
    • Site-wide: None

Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses

evolutionary biology more details view paper
  • Downloaded 539 times
  • Download rankings, all-time:
    • Site-wide: 55,985
    • In evolutionary biology: 2,891
  • Year to date:
    • Site-wide: 116,039
  • Since beginning of last month:
    • Site-wide: 57,920

Estimates of outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data

epidemiology more details view paper
  • Downloaded 470 times
  • Download rankings, all-time:
    • Site-wide: 65,331
    • In epidemiology: 2,876
  • Year to date:
    • Site-wide: 32,834
  • Since beginning of last month:
    • Site-wide: 51,908

Investigation of the validity of two Bayesian ancestral state reconstruction models for estimating Salmonella transmission during outbreaks

epidemiology more details view paper
  • Downloaded 279 times
  • Download rankings, all-time:
    • Site-wide: 102,513
    • In epidemiology: 4,297
  • Year to date:
    • Site-wide: 150,209
  • Since beginning of last month:
    • Site-wide: None

Joint inference of migration and reassortment patterns for viruses with segment genomes

evolutionary biology more details view paper
  • Downloaded 167 times
  • Download rankings, all-time:
    • Site-wide: 129,709
    • In evolutionary biology: 6,446
  • Year to date:
    • Site-wide: 37,417
  • Since beginning of last month:
    • Site-wide: None

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