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Author: Timothy G Vaughan

Rankings

  • All-time downloads: 91,470 (rank: 1,459 )
  • Categories:
    • bioinformatics: 716 (rank: 20,282 (tie) )
    • epidemiology: 82,757 (rank: 163 )
    • evolutionary biology: 6,050 (rank: 440 )
    • infectious diseases: 1,947 (rank: 15,920 (tie) )

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Preprints

Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020

epidemiology more details view paper
  • Downloaded 80,662 times
  • Download rankings, all-time:
    • Site-wide: 63
    • In epidemiology: 13
  • Year to date:
    • Site-wide: 127
  • Since beginning of last month:
    • Site-wide: 259

The origin and early spread of SARS-CoV-2 in Europe

infectious diseases more details view paper
  • Downloaded 1,947 times
  • Download rankings, all-time:
    • Site-wide: 8,529
    • In infectious diseases: 1,188
  • Year to date:
    • Site-wide: 29,466
  • Since beginning of last month:
    • Site-wide: 50,190

Estimating epidemic incidence and prevalence from genomic data

epidemiology more details view paper
  • Downloaded 1,388 times
  • Download rankings, all-time:
    • Site-wide: 14,101
    • In epidemiology: 954
  • Year to date:
    • Site-wide: 60,476
  • Since beginning of last month:
    • Site-wide: 58,637

BEAST 2.5: An Advanced Software Platform for Bayesian Evolutionary Analysis

evolutionary biology more details view paper
  • Downloaded 1,336 times
  • Download rankings, all-time:
    • Site-wide: 14,928
    • In evolutionary biology: 530
  • Year to date:
    • Site-wide: 52,195
  • Since beginning of last month:
    • Site-wide: 51,693

Novel Integrative Modeling of Molecules and Morphology across Evolutionary Timescales

evolutionary biology more details view paper
  • Downloaded 1,335 times
  • Download rankings, all-time:
    • Site-wide: 14,937
    • In evolutionary biology: 531
  • Year to date:
    • Site-wide: 18,381
  • Since beginning of last month:
    • Site-wide: 22,308

Infectious disease phylodynamics with occurrence data

evolutionary biology more details view paper
  • Downloaded 799 times
  • Download rankings, all-time:
    • Site-wide: 31,535
    • In evolutionary biology: 1,466
  • Year to date:
    • Site-wide: 35,908
  • Since beginning of last month:
    • Site-wide: 40,729

A Multi-State Birth-Death model for Bayesian inference of lineage-specific birth and death rates

evolutionary biology more details view paper
  • Downloaded 789 times
  • Download rankings, all-time:
    • Site-wide: 32,070
    • In evolutionary biology: 1,500
  • Year to date:
    • Site-wide: 100,008
  • Since beginning of last month:
    • Site-wide: 76,311

IcyTree: Rapid browser-based visualization for phylogenetic trees and networks

bioinformatics more details view paper
  • Downloaded 716 times
  • Download rankings, all-time:
    • Site-wide: 36,690
    • In bioinformatics: 4,017
  • Year to date:
    • Site-wide: 119,417
  • Since beginning of last month:
    • Site-wide: 128,161

Bayesian inference of ancestral recombination graphs for bacterial populations

evolutionary biology more details view paper
  • Downloaded 585 times
  • Download rankings, all-time:
    • Site-wide: 47,571
    • In evolutionary biology: 2,440
  • Year to date:
    • Site-wide: 125,190
  • Since beginning of last month:
    • Site-wide: 98,861

Improved multi-type birth-death phylodynamic inference in BEAST 2

evolutionary biology more details view paper
  • Downloaded 562 times
  • Download rankings, all-time:
    • Site-wide: 49,964
    • In evolutionary biology: 2,575
  • Year to date:
    • Site-wide: 44,694
  • Since beginning of last month:
    • Site-wide: 41,971

Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses

evolutionary biology more details view paper
  • Downloaded 526 times
  • Download rankings, all-time:
    • Site-wide: 54,144
    • In evolutionary biology: 2,859
  • Year to date:
    • Site-wide: 112,985
  • Since beginning of last month:
    • Site-wide: 91,126

Estimates of outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data

epidemiology more details view paper
  • Downloaded 430 times
  • Download rankings, all-time:
    • Site-wide: 67,464
    • In epidemiology: 2,914
  • Year to date:
    • Site-wide: 31,253
  • Since beginning of last month:
    • Site-wide: 33,210

Investigation of the validity of two Bayesian ancestral state reconstruction models for estimating Salmonella transmission during outbreaks

epidemiology more details view paper
  • Downloaded 277 times
  • Download rankings, all-time:
    • Site-wide: 97,356
    • In epidemiology: 4,024
  • Year to date:
    • Site-wide: 139,712
  • Since beginning of last month:
    • Site-wide: 113,440

Joint inference of migration and reassortment patterns for viruses with segment genomes

evolutionary biology more details view paper
  • Downloaded 118 times
  • Download rankings, all-time:
    • Site-wide: 133,302
    • In evolutionary biology: 6,641
  • Year to date:
    • Site-wide: 39,759
  • Since beginning of last month:
    • Site-wide: 6,779

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