Author: Ming Hu

ORCiD: http://orcid.org/0000-0003-0987-2916
Most recently observed institution: Department of Critical Care Medicine, Wuhan Pulmonary Hospital

Rankings

All-time downloads: 45,429 (rank: 2,580 out of 510,977)
Categories:
- bioinformatics: 7,242 (rank: 1,123 out of 36,842)
- cell biology: 98 (rank: 32,481 (tie) out of 33,919)
- genetics: 12,161 (rank: 1,129 out of 38,712)
- genomics: 10,345 (rank: 1,571 out of 45,704)
- infectious diseases: 10,626 (rank: 3,172 (tie) out of 32,278)
- molecular biology: 1,325 (rank: 3,174 (tie) out of 24,245)
- neuroscience: 3,112 (rank: 5,536 (tie) out of 73,695)
- systems biology: 520 (rank: 6,903 (tie) out of 12,894)

Downloads per author, site-wide

Preprints

THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data

bioinformatics more details view paper

No download data for this paper yet.

HPRep: Quantifying reproducibility in HiChIP and PLAC-seq datasets

genomics more details view paper

No download data for this paper yet.

Caution on Kidney Dysfunctions of 2019-nCoV Patients

infectious diseases more details view paper

Downloaded 10,626 times
Download rankings, all-time:
- Site-wide: 585 out of 118,454
- In infectious diseases: 178 out of 3,587
Year to date:
- Site-wide: 438 out of 118,454
Since beginning of last month:
- Site-wide: 1,941 out of 118,454

Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression

genetics more details view paper

Downloaded 9,270 times
Download rankings, all-time:
- Site-wide: 701 out of 118,454
- In genetics: 24 out of 5,139
Year to date:
- Site-wide: 18,426 out of 118,454
Since beginning of last month:
- Site-wide: 20,898 out of 118,454

The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions

bioinformatics more details view paper

Downloaded 2,860 times
Download rankings, all-time:
- Site-wide: 3,567 out of 118,454
- In bioinformatics: 412 out of 9,585
Year to date:
- Site-wide: 37,521 out of 118,454
Since beginning of last month:
- Site-wide: 40,684 out of 118,454

Histone H3 Lysine 4 methyltransferases MLL3 and MLL4 Modulate Long-range Chromatin Interactions at Enhancers

genomics more details view paper

Downloaded 2,479 times
Download rankings, all-time:
- Site-wide: 4,416 out of 118,454
- In genomics: 548 out of 6,436
Year to date:
- Site-wide: 44,781 out of 118,454
Since beginning of last month:
- Site-wide: 44,855 out of 118,454

HiCPlus: Resolution Enhancement of Hi-C interaction heatmap

bioinformatics more details view paper

Downloaded 2,113 times
Download rankings, all-time:
- Site-wide: 5,579 out of 118,454
- In bioinformatics: 707 out of 9,585
Year to date:
- Site-wide: 82,511 out of 118,454
Since beginning of last month:
- Site-wide: 68,327 out of 118,454

Using three-dimensional regulatory chromatin interactions from adult and fetal cortex to interpret genetic results for psychiatric disorders and cognitive traits

genetics more details view paper

Downloaded 1,952 times
Download rankings, all-time:
- Site-wide: 6,248 out of 118,454
- In genetics: 324 out of 5,139
Year to date:
- Site-wide: 9,734 out of 118,454
Since beginning of last month:
- Site-wide: 7,623 out of 118,454

Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper

Downloaded 1,462 times
Download rankings, all-time:
- Site-wide: 9,667 out of 118,454
- In genomics: 1,130 out of 6,436
Year to date:
- Site-wide: 63,076 out of 118,454
Since beginning of last month:
- Site-wide: 71,790 out of 118,454

3D Epigenomic Characterization Reveals Insights Into Gene Regulation and Lineage Specification During Corticogenesis

genomics more details view paper

Downloaded 1,443 times
Download rankings, all-time:
- Site-wide: 9,864 out of 118,454
- In genomics: 1,156 out of 6,436
Year to date:
- Site-wide: 3,926 out of 118,454
Since beginning of last month:
- Site-wide: 7,166 out of 118,454

CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells

genomics more details view paper

Downloaded 1,344 times
Download rankings, all-time:
- Site-wide: 11,011 out of 118,454
- In genomics: 1,278 out of 6,436
Year to date:
- Site-wide: 4,271 out of 118,454
Since beginning of last month:
- Site-wide: 6,447 out of 118,454

CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains

molecular biology more details view paper

Downloaded 1,325 times
Download rankings, all-time:
- Site-wide: 11,243 out of 118,454
- In molecular biology: 307 out of 3,620
Year to date:
- Site-wide: 4,350 out of 118,454
Since beginning of last month:
- Site-wide: 6,036 out of 118,454

Reliable sensory processing in mouse visual cortex through inhibitory interactions between Somatostatin and Parvalbumin interneurons

neuroscience more details view paper

Downloaded 1,232 times
Download rankings, all-time:
- Site-wide: 12,533 out of 118,454
- In neuroscience: 1,515 out of 18,616
Year to date:
- Site-wide: 38,629 out of 118,454
Since beginning of last month:
- Site-wide: 50,481 out of 118,454

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper

Downloaded 1,123 times
Download rankings, all-time:
- Site-wide: 14,374 out of 118,454
- In bioinformatics: 1,842 out of 9,585
Year to date:
- Site-wide: 58,052 out of 118,454
Since beginning of last month:
- Site-wide: 40,233 out of 118,454

Removing unwanted variation between samples in Hi-C experiments

genomics more details view paper

Downloaded 1,122 times
Download rankings, all-time:
- Site-wide: 14,389 out of 118,454
- In genomics: 1,599 out of 6,436
Year to date:
- Site-wide: 32,000 out of 118,454
Since beginning of last month:
- Site-wide: 24,468 out of 118,454

Robust Hi-C chromatin loop maps in human neurogenesis and brain tissues at high-resolution

genomics more details view paper

Downloaded 1,091 times
Download rankings, all-time:
- Site-wide: 14,988 out of 118,454
- In genomics: 1,659 out of 6,436
Year to date:
- Site-wide: 12,829 out of 118,454
Since beginning of last month:
- Site-wide: 26,691 out of 118,454

HiCAR: a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility, and cis-regulatory chromatin contacts

genomics more details view paper

Downloaded 885 times
Download rankings, all-time:
- Site-wide: 20,386 out of 118,454
- In genomics: 2,116 out of 6,436
Year to date:
- Site-wide: 6,919 out of 118,454
Since beginning of last month:
- Site-wide: 663 out of 118,454

HUGIn: Hi-C Unifying Genomic Interrogator

genetics more details view paper

Downloaded 715 times
Download rankings, all-time:
- Site-wide: 27,599 out of 118,454
- In genetics: 1,427 out of 5,139
Year to date:
- Site-wide: 109,911 out of 118,454
Since beginning of last month:
- Site-wide: 85,600 out of 118,454

In V4, pair-wise synchrony and correlations depend on the structure of the population code

neuroscience more details view paper

Downloaded 652 times
Download rankings, all-time:
- Site-wide: 31,265 out of 118,454
- In neuroscience: 4,452 out of 18,616
Year to date:
- Site-wide: 23,126 out of 118,454
Since beginning of last month:
- Site-wide: 41,265 out of 118,454

BAMM-SC: A Bayesian mixture model for clustering droplet-based single cell transcriptomic data from population studies

bioinformatics more details view paper

Downloaded 611 times
Download rankings, all-time:
- Site-wide: 34,067 out of 118,454
- In bioinformatics: 3,883 out of 9,585
Year to date:
- Site-wide: 80,329 out of 118,454
Since beginning of last month:
- Site-wide: 64,264 out of 118,454

Integrative analyses of multi-tissue Hi-C and eQTL data demonstrate close spatial proximity between eQTLs and their target genes

systems biology more details view paper

Downloaded 520 times
Download rankings, all-time:
- Site-wide: 41,584 out of 118,454
- In systems biology: 1,014 out of 2,639
Year to date:
- Site-wide: 72,861 out of 118,454
Since beginning of last month:
- Site-wide: 84,263 out of 118,454

TWO-SIGMA: a novel TWO-component SInGle cell Model-based Association method for single-cell RNA-seq data

genomics more details view paper

Downloaded 519 times
Download rankings, all-time:
- Site-wide: 41,700 out of 118,454
- In genomics: 3,493 out of 6,436
Year to date:
- Site-wide: 30,027 out of 118,454
Since beginning of last month:
- Site-wide: 41,009 out of 118,454

Label-free characterization of visual cortical areas in awake mice via three-photon microscopy reveals correlations between functional maps and structural substrates

neuroscience more details view paper

Downloaded 465 times
Download rankings, all-time:
- Site-wide: 47,286 out of 118,454
- In neuroscience: 7,119 out of 18,616
Year to date:
- Site-wide: 43,110 out of 118,454
Since beginning of last month:
- Site-wide: 80,584 out of 118,454

FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper

Downloaded 433 times
Download rankings, all-time:
- Site-wide: 51,147 out of 118,454
- In bioinformatics: 5,344 out of 9,585
Year to date:
- Site-wide: 43,641 out of 118,454
Since beginning of last month:
- Site-wide: 20,274 out of 118,454

Reading-out task variables as a low-dimensional reconstruction of neural spike trains in single trials

neuroscience more details view paper

Downloaded 311 times
Download rankings, all-time:
- Site-wide: 69,401 out of 118,454
- In neuroscience: 10,872 out of 18,616
Year to date:
- Site-wide: 95,708 out of 118,454
Since beginning of last month:
- Site-wide: 103,819 out of 118,454

Choice is represented by ensembles of bursting neurons in the superficial layers of monkey V1

neuroscience more details view paper

Downloaded 263 times
Download rankings, all-time:
- Site-wide: 78,219 out of 118,454
- In neuroscience: 12,327 out of 18,616
Year to date:
- Site-wide: 31,038 out of 118,454
Since beginning of last month:
- Site-wide: 57,868 out of 118,454

Transcriptional Network Orchestrating Regional Patterning of Cortical Progenitors

neuroscience more details view paper

Downloaded 189 times
Download rankings, all-time:
- Site-wide: 93,266 out of 118,454
- In neuroscience: 14,771 out of 18,616
Year to date:
- Site-wide: 45,380 out of 118,454
Since beginning of last month:
- Site-wide: 5,217 out of 118,454

Sexually dimorphic roles for the type 2 diabetes-associated C2cd4b gene in murine glucose homeostasis

genetics more details view paper

Downloaded 131 times
Download rankings, all-time:
- Site-wide: 103,796 out of 118,454
- In genetics: 4,743 out of 5,139
Year to date:
- Site-wide: 66,085 out of 118,454
Since beginning of last month:
- Site-wide: 67,638 out of 118,454

HiC-ACT: Improved Detection of Chromatin Interactions from Hi-C Data via Aggregated Cauchy Test

bioinformatics more details view paper

Downloaded 102 times
Download rankings, all-time:
- Site-wide: 108,314 out of 118,454
- In bioinformatics: 8,976 out of 9,585
Year to date:
- Site-wide: 81,205 out of 118,454
Since beginning of last month:
- Site-wide: 11,361 out of 118,454

Chromatin 3D interaction analysis of the STARD10 locus unveils FCHSD2 as a new regulator of insulin secretion

cell biology more details view paper

Downloaded 98 times
Download rankings, all-time:
- Site-wide: 108,934 out of 118,454
- In cell biology: 5,072 out of 5,430
Year to date:
- Site-wide: 84,242 out of 118,454
Since beginning of last month:
- Site-wide: 65,785 out of 118,454

MUNIn (Multiple cell-type UNifying long-range chromatin Interaction detector): a statistical framework for identifying long-range chromatin interactions from multiple cell types

genetics more details view paper

Downloaded 93 times
Download rankings, all-time:
- Site-wide: 109,656 out of 118,454
- In genetics: 4,922 out of 5,139
Year to date:
- Site-wide: 86,789 out of 118,454
Since beginning of last month:
- Site-wide: 12,685 out of 118,454

PanLingua

Multi-lingual preprint search

News

27 Nov 2020: The website and API now include results pulled from medRxiv as well as bioRxiv.
18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
22 Jan 2019: Nature just published an article about Rxivist and our data.
13 Jan 2019: The Rxivist preprint is live!