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Author: Ming Hu

  • ORCiD: http://orcid.org/0000-0003-0987-2916
  • Most recently observed institution: Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, USA.

Rankings

  • All-time downloads: 52,415 (rank: 3,052 )
  • Categories:
    • bioinformatics: 8,696 (rank: 1,111 (tie) )
    • cell biology: 157 (rank: 38,257 (tie) )
    • genetics: 13,183 (rank: 1,149 )
    • genomics: 12,159 (rank: 1,570 )
    • infectious diseases: 11,931 (rank: 4,330 (tie) )
    • molecular biology: 1,922 (rank: 2,819 (tie) )
    • neuroscience: 3,809 (rank: 5,828 (tie) )
    • systems biology: 558 (rank: 8,053 (tie) )

Downloads per author, site-wide

Preprints

Caution on Kidney Dysfunctions of 2019-nCoV Patients

infectious diseases more details view paper
  • Downloaded 11,931 times
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    • Site-wide: 724
    • In infectious diseases: 232
  • Year to date:
    • Site-wide: 2,549
  • Since beginning of last month:
    • Site-wide: 2,713

Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression

genetics more details view paper
  • Downloaded 9,438 times
  • Download rankings, all-time:
    • Site-wide: 983
    • In genetics: 26
  • Year to date:
    • Site-wide: 43,437
  • Since beginning of last month:
    • Site-wide: 61,631

The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions

bioinformatics more details view paper
  • Downloaded 2,975 times
  • Download rankings, all-time:
    • Site-wide: 4,760
    • In bioinformatics: 475
  • Year to date:
    • Site-wide: 65,711
  • Since beginning of last month:
    • Site-wide: 77,552

Histone H3 Lysine 4 methyltransferases MLL3 and MLL4 Modulate Long-range Chromatin Interactions at Enhancers

genomics more details view paper
  • Downloaded 2,572 times
  • Download rankings, all-time:
    • Site-wide: 5,876
    • In genomics: 627
  • Year to date:
    • Site-wide: 75,563
  • Since beginning of last month:
    • Site-wide: 85,043

Using three-dimensional regulatory chromatin interactions from adult and fetal cortex to interpret genetic results for psychiatric disorders and cognitive traits

genetics more details view paper
  • Downloaded 2,449 times
  • Download rankings, all-time:
    • Site-wide: 6,343
    • In genetics: 281
  • Year to date:
    • Site-wide: 9,588
  • Since beginning of last month:
    • Site-wide: 7,668

HiCPlus: Resolution Enhancement of Hi-C interaction heatmap

bioinformatics more details view paper
  • Downloaded 2,169 times
  • Download rankings, all-time:
    • Site-wide: 7,556
    • In bioinformatics: 863
  • Year to date:
    • Site-wide: 101,209
  • Since beginning of last month:
    • Site-wide: 57,136

CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains

molecular biology more details view paper
  • Downloaded 1,922 times
  • Download rankings, all-time:
    • Site-wide: 9,028
    • In molecular biology: 233
  • Year to date:
    • Site-wide: 7,420
  • Since beginning of last month:
    • Site-wide: 11,734

3D Epigenomic Characterization Reveals Insights Into Gene Regulation and Lineage Specification During Corticogenesis

genomics more details view paper
  • Downloaded 1,838 times
  • Download rankings, all-time:
    • Site-wide: 9,647
    • In genomics: 995
  • Year to date:
    • Site-wide: 13,098
  • Since beginning of last month:
    • Site-wide: 17,380

CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells

genomics more details view paper
  • Downloaded 1,736 times
  • Download rankings, all-time:
    • Site-wide: 10,504
    • In genomics: 1,095
  • Year to date:
    • Site-wide: 14,010
  • Since beginning of last month:
    • Site-wide: 19,593

Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper
  • Downloaded 1,499 times
  • Download rankings, all-time:
    • Site-wide: 12,988
    • In genomics: 1,352
  • Year to date:
    • Site-wide: 126,374
  • Since beginning of last month:
    • Site-wide: 104,377

Removing unwanted variation between samples in Hi-C experiments

genomics more details view paper
  • Downloaded 1,457 times
  • Download rankings, all-time:
    • Site-wide: 13,576
    • In genomics: 1,397
  • Year to date:
    • Site-wide: 17,331
  • Since beginning of last month:
    • Site-wide: 19,547

Robust Hi-C chromatin loop maps in human neurogenesis and brain tissues at high-resolution

genomics more details view paper
  • Downloaded 1,390 times
  • Download rankings, all-time:
    • Site-wide: 14,588
    • In genomics: 1,487
  • Year to date:
    • Site-wide: 18,803
  • Since beginning of last month:
    • Site-wide: 32,040

Reliable sensory processing in mouse visual cortex through inhibitory interactions between Somatostatin and Parvalbumin interneurons

neuroscience more details view paper
  • Downloaded 1,356 times
  • Download rankings, all-time:
    • Site-wide: 15,161
    • In neuroscience: 1,751
  • Year to date:
    • Site-wide: 52,522
  • Since beginning of last month:
    • Site-wide: 43,653

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
  • Downloaded 1,173 times
  • Download rankings, all-time:
    • Site-wide: 18,813
    • In bioinformatics: 2,184
  • Year to date:
    • Site-wide: 105,254
  • Since beginning of last month:
    • Site-wide: 79,178

HUGIn: Hi-C Unifying Genomic Interrogator

genetics more details view paper
  • Downloaded 740 times
  • Download rankings, all-time:
    • Site-wide: 36,380
    • In genetics: 1,677
  • Year to date:
    • Site-wide: 137,610
  • Since beginning of last month:
    • Site-wide: 121,149

In V4, pair-wise synchrony and correlations depend on the structure of the population code

neuroscience more details view paper
  • Downloaded 722 times
  • Download rankings, all-time:
    • Site-wide: 37,575
    • In neuroscience: 5,136
  • Year to date:
    • Site-wide: 93,566
  • Since beginning of last month:
    • Site-wide: 80,736

BAMM-SC: A Bayesian mixture model for clustering droplet-based single cell transcriptomic data from population studies

bioinformatics more details view paper
  • Downloaded 668 times
  • Download rankings, all-time:
    • Site-wide: 41,715
    • In bioinformatics: 4,459
  • Year to date:
    • Site-wide: 92,617
  • Since beginning of last month:
    • Site-wide: 114,759

SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data

bioinformatics more details view paper
  • Downloaded 666 times
  • Download rankings, all-time:
    • Site-wide: 41,866
    • In bioinformatics: 4,471
  • Year to date:
    • Site-wide: 10,107
  • Since beginning of last month:
    • Site-wide: 13,472

Parallel Characterization of cis-Regulatory Elements for Multiple Genes Using CRISPRpath

genomics more details view paper
  • Downloaded 651 times
  • Download rankings, all-time:
    • Site-wide: 43,133
    • In genomics: 3,483
  • Year to date:
    • Site-wide: 5,069
  • Since beginning of last month:
    • Site-wide: 15,065

TWO-SIGMA: a novel TWO-component SInGle cell Model-based Association method for single-cell RNA-seq data

genomics more details view paper
  • Downloaded 651 times
  • Download rankings, all-time:
    • Site-wide: 43,101
    • In genomics: 3,484
  • Year to date:
    • Site-wide: 46,245
  • Since beginning of last month:
    • Site-wide: 95,099

Integrative analyses of multi-tissue Hi-C and eQTL data demonstrate close spatial proximity between eQTLs and their target genes

systems biology more details view paper
  • Downloaded 558 times
  • Download rankings, all-time:
    • Site-wide: 52,276
    • In systems biology: 1,164
  • Year to date:
    • Site-wide: 118,515
  • Since beginning of last month:
    • Site-wide: 124,182

FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper
  • Downloaded 548 times
  • Download rankings, all-time:
    • Site-wide: 53,441
    • In bioinformatics: 5,423
  • Year to date:
    • Site-wide: 87,108
  • Since beginning of last month:
    • Site-wide: 112,775

Label-free characterization of visual cortical areas in awake mice via three-photon microscopy reveals correlations between functional maps and structural substrates

neuroscience more details view paper
  • Downloaded 522 times
  • Download rankings, all-time:
    • Site-wide: 56,519
    • In neuroscience: 8,219
  • Year to date:
    • Site-wide: 102,155
  • Since beginning of last month:
    • Site-wide: 75,931

Transcriptional Network Orchestrating Regional Patterning of Cortical Progenitors

neuroscience more details view paper
  • Downloaded 449 times
  • Download rankings, all-time:
    • Site-wide: 66,770
    • In neuroscience: 9,900
  • Year to date:
    • Site-wide: 41,094
  • Since beginning of last month:
    • Site-wide: 64,588

Choice can be predicted from populations of bursting neurons in superficial layers of monkey V1

neuroscience more details view paper
  • Downloaded 424 times
  • Download rankings, all-time:
    • Site-wide: 70,959
    • In neuroscience: 10,566
  • Year to date:
    • Site-wide: 50,729
  • Since beginning of last month:
    • Site-wide: 58,462

Reading-out task variables as a low-dimensional reconstruction of neural spike trains in single trials

neuroscience more details view paper
  • Downloaded 336 times
  • Download rankings, all-time:
    • Site-wide: 87,349
    • In neuroscience: 13,164
  • Year to date:
    • Site-wide: 141,990
  • Since beginning of last month:
    • Site-wide: 147,034

THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data

bioinformatics more details view paper
  • Downloaded 262 times
  • Download rankings, all-time:
    • Site-wide: 103,956
    • In bioinformatics: 8,863
  • Year to date:
    • Site-wide: 68,223
  • Since beginning of last month:
    • Site-wide: 68,165

HiC-ACT: Improved Detection of Chromatin Interactions from Hi-C Data via Aggregated Cauchy Test

bioinformatics more details view paper
  • Downloaded 235 times
  • Download rankings, all-time:
    • Site-wide: 110,564
    • In bioinformatics: 9,249
  • Year to date:
    • Site-wide: 67,089
  • Since beginning of last month:
    • Site-wide: 63,531

TWO-SIGMA-G: A New Competitive Gene Set Testing Framework for scRNA-seq Data Accounting for Inter-Gene and Cell-Cell Correlation

genomics more details view paper
  • Downloaded 225 times
  • Download rankings, all-time:
    • Site-wide: 112,929
    • In genomics: 6,457
  • Year to date:
    • Site-wide: 22,902
  • Since beginning of last month:
    • Site-wide: 70,579

MUNIn (Multiple sample UNifying long-range chromatin Interaction detector): a statistical framework for identifying long-range chromatin interactions from multiple samples

genetics more details view paper
  • Downloaded 194 times
  • Download rankings, all-time:
    • Site-wide: 120,465
    • In genetics: 5,059
  • Year to date:
    • Site-wide: 66,975
  • Since beginning of last month:
    • Site-wide: 108,346

Sexually dimorphic roles for the type 2 diabetes-associated C2cd4b gene in murine glucose homeostasis

genetics more details view paper
  • Downloaded 185 times
  • Download rankings, all-time:
    • Site-wide: 122,618
    • In genetics: 5,124
  • Year to date:
    • Site-wide: 108,594
  • Since beginning of last month:
    • Site-wide: 127,162

Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types

genetics more details view paper
  • Downloaded 177 times
  • Download rankings, all-time:
    • Site-wide: 124,585
    • In genetics: 5,171
  • Year to date:
    • Site-wide: 30,833
  • Since beginning of last month:
    • Site-wide: 84,520

Chromatin 3D interaction analysis of the STARD10 locus unveils FCHSD2 as a new regulator of insulin secretion

cell biology more details view paper
  • Downloaded 157 times
  • Download rankings, all-time:
    • Site-wide: 129,180
    • In cell biology: 5,945
  • Year to date:
    • Site-wide: 98,510
  • Since beginning of last month:
    • Site-wide: 83,088

HPRep: Quantifying reproducibility in HiChIP and PLAC-seq datasets

genomics more details view paper
  • Downloaded 140 times
  • Download rankings, all-time:
    • Site-wide: 132,919
    • In genomics: 7,065
  • Year to date:
    • Site-wide: 71,466
  • Since beginning of last month:
    • Site-wide: 74,327

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