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Author: Ming Hu

Rankings

  • All-time downloads: 50,354 (rank: 2,873 )
  • Categories:
    • bioinformatics: 8,392 (rank: 1,083 (tie) )
    • cell biology: 144 (rank: 36,385 (tie) )
    • genetics: 12,927 (rank: 1,133 )
    • genomics: 11,441 (rank: 1,580 )
    • infectious diseases: 11,547 (rank: 4,011 (tie) )
    • molecular biology: 1,706 (rank: 2,943 (tie) )
    • neuroscience: 3,652 (rank: 5,606 (tie) )
    • systems biology: 545 (rank: 7,649 (tie) )

Downloads per author, site-wide

Preprints

Caution on Kidney Dysfunctions of 2019-nCoV Patients

infectious diseases more details view paper
  • Downloaded 11,547 times
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    • Site-wide: 680
    • In infectious diseases: 214
  • Year to date:
    • Site-wide: 2,568
  • Since beginning of last month:
    • Site-wide: 3,251

Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression

genetics more details view paper
  • Downloaded 9,403 times
  • Download rankings, all-time:
    • Site-wide: 894
    • In genetics: 26
  • Year to date:
    • Site-wide: 34,573
  • Since beginning of last month:
    • Site-wide: 45,224

The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions

bioinformatics more details view paper
  • Downloaded 2,933 times
  • Download rankings, all-time:
    • Site-wide: 4,388
    • In bioinformatics: 451
  • Year to date:
    • Site-wide: 70,632
  • Since beginning of last month:
    • Site-wide: 127,157

Histone H3 Lysine 4 methyltransferases MLL3 and MLL4 Modulate Long-range Chromatin Interactions at Enhancers

genomics more details view paper
  • Downloaded 2,553 times
  • Download rankings, all-time:
    • Site-wide: 5,356
    • In genomics: 592
  • Year to date:
    • Site-wide: 60,642
  • Since beginning of last month:
    • Site-wide: 80,603

Using three-dimensional regulatory chromatin interactions from adult and fetal cortex to interpret genetic results for psychiatric disorders and cognitive traits

genetics more details view paper
  • Downloaded 2,295 times
  • Download rankings, all-time:
    • Site-wide: 6,298
    • In genetics: 297
  • Year to date:
    • Site-wide: 9,563
  • Since beginning of last month:
    • Site-wide: 14,051

HiCPlus: Resolution Enhancement of Hi-C interaction heatmap

bioinformatics more details view paper
  • Downloaded 2,143 times
  • Download rankings, all-time:
    • Site-wide: 6,962
    • In bioinformatics: 820
  • Year to date:
    • Site-wide: 113,086
  • Since beginning of last month:
    • Site-wide: 110,725

3D Epigenomic Characterization Reveals Insights Into Gene Regulation and Lineage Specification During Corticogenesis

genomics more details view paper
  • Downloaded 1,755 times
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    • Site-wide: 9,369
    • In genomics: 1,013
  • Year to date:
    • Site-wide: 10,254
  • Since beginning of last month:
    • Site-wide: 6,648

CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains

molecular biology more details view paper
  • Downloaded 1,706 times
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    • Site-wide: 9,785
    • In molecular biology: 258
  • Year to date:
    • Site-wide: 8,694
  • Since beginning of last month:
    • Site-wide: 8,210

CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells

genomics more details view paper
  • Downloaded 1,650 times
  • Download rankings, all-time:
    • Site-wide: 10,246
    • In genomics: 1,104
  • Year to date:
    • Site-wide: 11,374
  • Since beginning of last month:
    • Site-wide: 14,501

Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper
  • Downloaded 1,490 times
  • Download rankings, all-time:
    • Site-wide: 11,883
    • In genomics: 1,285
  • Year to date:
    • Site-wide: 112,257
  • Since beginning of last month:
    • Site-wide: 71,903

Removing unwanted variation between samples in Hi-C experiments

genomics more details view paper
  • Downloaded 1,360 times
  • Download rankings, all-time:
    • Site-wide: 13,681
    • In genomics: 1,448
  • Year to date:
    • Site-wide: 16,327
  • Since beginning of last month:
    • Site-wide: 33,410

Robust Hi-C chromatin loop maps in human neurogenesis and brain tissues at high-resolution

genomics more details view paper
  • Downloaded 1,331 times
  • Download rankings, all-time:
    • Site-wide: 14,136
    • In genomics: 1,485
  • Year to date:
    • Site-wide: 14,146
  • Since beginning of last month:
    • Site-wide: 23,217

Reliable sensory processing in mouse visual cortex through inhibitory interactions between Somatostatin and Parvalbumin interneurons

neuroscience more details view paper
  • Downloaded 1,311 times
  • Download rankings, all-time:
    • Site-wide: 14,444
    • In neuroscience: 1,694
  • Year to date:
    • Site-wide: 50,704
  • Since beginning of last month:
    • Site-wide: 38,468

MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
  • Downloaded 1,155 times
  • Download rankings, all-time:
    • Site-wide: 17,483
    • In bioinformatics: 2,093
  • Year to date:
    • Site-wide: 100,150
  • Since beginning of last month:
    • Site-wide: 62,832

HUGIn: Hi-C Unifying Genomic Interrogator

genetics more details view paper
  • Downloaded 734 times
  • Download rankings, all-time:
    • Site-wide: 33,459
    • In genetics: 1,600
  • Year to date:
    • Site-wide: 122,462
  • Since beginning of last month:
    • Site-wide: 124,282

In V4, pair-wise synchrony and correlations depend on the structure of the population code

neuroscience more details view paper
  • Downloaded 702 times
  • Download rankings, all-time:
    • Site-wide: 35,525
    • In neuroscience: 4,914
  • Year to date:
    • Site-wide: 86,378
  • Since beginning of last month:
    • Site-wide: 109,241

BAMM-SC: A Bayesian mixture model for clustering droplet-based single cell transcriptomic data from population studies

bioinformatics more details view paper
  • Downloaded 654 times
  • Download rankings, all-time:
    • Site-wide: 39,008
    • In bioinformatics: 4,256
  • Year to date:
    • Site-wide: 74,564
  • Since beginning of last month:
    • Site-wide: 134,886

TWO-SIGMA: a novel TWO-component SInGle cell Model-based Association method for single-cell RNA-seq data

genomics more details view paper
  • Downloaded 607 times
  • Download rankings, all-time:
    • Site-wide: 42,895
    • In genomics: 3,488
  • Year to date:
    • Site-wide: 41,735
  • Since beginning of last month:
    • Site-wide: 56,163

Integrative analyses of multi-tissue Hi-C and eQTL data demonstrate close spatial proximity between eQTLs and their target genes

systems biology more details view paper
  • Downloaded 545 times
  • Download rankings, all-time:
    • Site-wide: 49,039
    • In systems biology: 1,121
  • Year to date:
    • Site-wide: 109,738
  • Since beginning of last month:
    • Site-wide: 127,078

FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper
  • Downloaded 532 times
  • Download rankings, all-time:
    • Site-wide: 50,386
    • In bioinformatics: 5,201
  • Year to date:
    • Site-wide: 70,514
  • Since beginning of last month:
    • Site-wide: 120,207

SnapHiC: a computational pipeline to map chromatin contacts from single cell Hi-C data

bioinformatics more details view paper
  • Downloaded 530 times
  • Download rankings, all-time:
    • Site-wide: 50,544
    • In bioinformatics: 5,222
  • Year to date:
    • Site-wide: 9,413
  • Since beginning of last month:
    • Site-wide: 25,025

Label-free characterization of visual cortical areas in awake mice via three-photon microscopy reveals correlations between functional maps and structural substrates

neuroscience more details view paper
  • Downloaded 498 times
  • Download rankings, all-time:
    • Site-wide: 54,461
    • In neuroscience: 8,040
  • Year to date:
    • Site-wide: 110,957
  • Since beginning of last month:
    • Site-wide: 100,086

Transcriptional Network Orchestrating Regional Patterning of Cortical Progenitors

neuroscience more details view paper
  • Downloaded 408 times
  • Download rankings, all-time:
    • Site-wide: 67,108
    • In neuroscience: 10,139
  • Year to date:
    • Site-wide: 34,174
  • Since beginning of last month:
    • Site-wide: 127,908

Choice can be predicted from populations of bursting neurons in superficial layers of monkey V1

neuroscience more details view paper
  • Downloaded 399 times
  • Download rankings, all-time:
    • Site-wide: 68,620
    • In neuroscience: 10,339
  • Year to date:
    • Site-wide: 37,788
  • Since beginning of last month:
    • Site-wide: 58,719

Parallel Characterization of cis-Regulatory Elements for Multiple Genes UsingCRISPRpath

genomics more details view paper
  • Downloaded 397 times
  • Download rankings, all-time:
    • Site-wide: 69,039
    • In genomics: 4,807
  • Year to date:
    • Site-wide: 5,443
  • Since beginning of last month:
    • Site-wide: 7,934

Reading-out task variables as a low-dimensional reconstruction of neural spike trains in single trials

neuroscience more details view paper
  • Downloaded 334 times
  • Download rankings, all-time:
    • Site-wide: 80,379
    • In neuroscience: 12,278
  • Year to date:
    • Site-wide: 120,876
  • Since beginning of last month:
    • Site-wide: 83,289

THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data

bioinformatics more details view paper
  • Downloaded 233 times
  • Download rankings, all-time:
    • Site-wide: 102,129
    • In bioinformatics: 8,704
  • Year to date:
    • Site-wide: 60,868
  • Since beginning of last month:
    • Site-wide: 61,976

HiC-ACT: Improved Detection of Chromatin Interactions from Hi-C Data via Aggregated Cauchy Test

bioinformatics more details view paper
  • Downloaded 212 times
  • Download rankings, all-time:
    • Site-wide: 106,963
    • In bioinformatics: 9,007
  • Year to date:
    • Site-wide: 53,576
  • Since beginning of last month:
    • Site-wide: 75,996

TWO-SIGMA-G: A New Competitive Gene Set Testing Framework for scRNA-seq Data Accounting for Inter-Gene and Cell-Cell Correlation

genomics more details view paper
  • Downloaded 186 times
  • Download rankings, all-time:
    • Site-wide: 112,891
    • In genomics: 6,376
  • Year to date:
    • Site-wide: 15,630
  • Since beginning of last month:
    • Site-wide: 36,646

MUNIn (Multiple sample UNifying long-range chromatin Interaction detector): a statistical framework for identifying long-range chromatin interactions from multiple samples

genetics more details view paper
  • Downloaded 179 times
  • Download rankings, all-time:
    • Site-wide: 114,344
    • In genetics: 4,934
  • Year to date:
    • Site-wide: 48,083
  • Since beginning of last month:
    • Site-wide: 14,444

Sexually dimorphic roles for the type 2 diabetes-associated C2cd4b gene in murine glucose homeostasis

genetics more details view paper
  • Downloaded 172 times
  • Download rankings, all-time:
    • Site-wide: 115,987
    • In genetics: 4,979
  • Year to date:
    • Site-wide: 94,517
  • Since beginning of last month:
    • Site-wide: 76,184

Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types

genetics more details view paper
  • Downloaded 144 times
  • Download rankings, all-time:
    • Site-wide: 121,995
    • In genetics: 5,168
  • Year to date:
    • Site-wide: 21,708
  • Since beginning of last month:
    • Site-wide: 15,246

Chromatin 3D interaction analysis of the STARD10 locus unveils FCHSD2 as a new regulator of insulin secretion

cell biology more details view paper
  • Downloaded 144 times
  • Download rankings, all-time:
    • Site-wide: 121,903
    • In cell biology: 5,629
  • Year to date:
    • Site-wide: 80,567
  • Since beginning of last month:
    • Site-wide: 85,652

HPRep: Quantifying reproducibility in HiChIP and PLAC-seq datasets

genomics more details view paper
  • Downloaded 112 times
  • Download rankings, all-time:
    • Site-wide: 128,269
    • In genomics: 6,829
  • Year to date:
    • Site-wide: 64,670
  • Since beginning of last month:
    • Site-wide: 59,966

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