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Author: Ming Hu

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  • All-time downloads: 45,429 (rank: 2,580 out of 510,977)
  • Categories:
    • bioinformatics: 7,242 (rank: 1,123 out of 36,842)
    • cell biology: 98 (rank: 32,481 (tie) out of 33,919)
    • genetics: 12,161 (rank: 1,129 out of 38,712)
    • genomics: 10,345 (rank: 1,571 out of 45,704)
    • infectious diseases: 10,626 (rank: 3,172 (tie) out of 32,278)
    • molecular biology: 1,325 (rank: 3,174 (tie) out of 24,245)
    • neuroscience: 3,112 (rank: 5,536 (tie) out of 73,695)
    • systems biology: 520 (rank: 6,903 (tie) out of 12,894)

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Preprints

THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data

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HPRep: Quantifying reproducibility in HiChIP and PLAC-seq datasets

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Caution on Kidney Dysfunctions of 2019-nCoV Patients

infectious diseases more details view paper
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Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression

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The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions

bioinformatics more details view paper
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Histone H3 Lysine 4 methyltransferases MLL3 and MLL4 Modulate Long-range Chromatin Interactions at Enhancers

genomics more details view paper
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HiCPlus: Resolution Enhancement of Hi-C interaction heatmap

bioinformatics more details view paper
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Using three-dimensional regulatory chromatin interactions from adult and fetal cortex to interpret genetic results for psychiatric disorders and cognitive traits

genetics more details view paper
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Common DNA sequence variation influences 3-dimensional conformation of the human genome

genomics more details view paper
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3D Epigenomic Characterization Reveals Insights Into Gene Regulation and Lineage Specification During Corticogenesis

genomics more details view paper
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CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells

genomics more details view paper
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CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains

molecular biology more details view paper
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Reliable sensory processing in mouse visual cortex through inhibitory interactions between Somatostatin and Parvalbumin interneurons

neuroscience more details view paper
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MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

bioinformatics more details view paper
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    • Site-wide: 40,233 out of 118,454

Removing unwanted variation between samples in Hi-C experiments

genomics more details view paper
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Robust Hi-C chromatin loop maps in human neurogenesis and brain tissues at high-resolution

genomics more details view paper
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HiCAR: a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility, and cis-regulatory chromatin contacts

genomics more details view paper
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HUGIn: Hi-C Unifying Genomic Interrogator

genetics more details view paper
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In V4, pair-wise synchrony and correlations depend on the structure of the population code

neuroscience more details view paper
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BAMM-SC: A Bayesian mixture model for clustering droplet-based single cell transcriptomic data from population studies

bioinformatics more details view paper
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Integrative analyses of multi-tissue Hi-C and eQTL data demonstrate close spatial proximity between eQTLs and their target genes

systems biology more details view paper
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TWO-SIGMA: a novel TWO-component SInGle cell Model-based Association method for single-cell RNA-seq data

genomics more details view paper
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Label-free characterization of visual cortical areas in awake mice via three-photon microscopy reveals correlations between functional maps and structural substrates

neuroscience more details view paper
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FIREcaller: Detecting Frequently Interacting Regions from Hi-C Data

bioinformatics more details view paper
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Reading-out task variables as a low-dimensional reconstruction of neural spike trains in single trials

neuroscience more details view paper
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Choice is represented by ensembles of bursting neurons in the superficial layers of monkey V1

neuroscience more details view paper
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Transcriptional Network Orchestrating Regional Patterning of Cortical Progenitors

neuroscience more details view paper
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Sexually dimorphic roles for the type 2 diabetes-associated C2cd4b gene in murine glucose homeostasis

genetics more details view paper
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HiC-ACT: Improved Detection of Chromatin Interactions from Hi-C Data via Aggregated Cauchy Test

bioinformatics more details view paper
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Chromatin 3D interaction analysis of the STARD10 locus unveils FCHSD2 as a new regulator of insulin secretion

cell biology more details view paper
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MUNIn (Multiple cell-type UNifying long-range chromatin Interaction detector): a statistical framework for identifying long-range chromatin interactions from multiple cell types

genetics more details view paper
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    • In genetics: 4,922 out of 5,139
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