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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,976 bioRxiv papers from 245,355 authors.

Author: Liam Paninski

  • Most recently observed institution: Columbia University

Rankings

  • All-time downloads: 29,651 (rank: 492 out of 245,355)
  • Categories:
    • bioinformatics: 2,317 (rank: 2,545 out of 21,701)
    • neuroscience: 27,334 (rank: 28 out of 37,802)

Downloads per author, site-wide

Preprints

NeuroPAL: A Neuronal Polychromatic Atlas of Landmarks for Whole-Brain Imaging in C. elegans

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No bioRxiv download data for this paper yet.

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

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  • Downloaded 7,459 times
  • Download rankings, all-time:
    • Site-wide: 152 out of 52,976
    • In neuroscience: 21 out of 9,298
  • Year to date:
    • Site-wide: 104 out of 52,976
  • Since beginning of last month:
    • Site-wide: 139 out of 52,976

Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

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  • Downloaded 2,527 times
  • Download rankings, all-time:
    • Site-wide: 1,212 out of 52,976
    • In neuroscience: 168 out of 9,298
  • Year to date:
    • Site-wide: 5,313 out of 52,976
  • Since beginning of last month:
    • Site-wide: 8,169 out of 52,976

YASS: Yet Another Spike Sorter

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  • Downloaded 2,180 times
  • Download rankings, all-time:
    • Site-wide: 1,593 out of 52,976
    • In neuroscience: 218 out of 9,298
  • Year to date:
    • Site-wide: 3,751 out of 52,976
  • Since beginning of last month:
    • Site-wide: 7,041 out of 52,976

OnACID: Online Analysis of Calcium Imaging Data in Real Time

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  • Downloaded 1,960 times
  • Download rankings, all-time:
    • Site-wide: 1,911 out of 52,976
    • In neuroscience: 264 out of 9,298
  • Year to date:
    • Site-wide: 5,647 out of 52,976
  • Since beginning of last month:
    • Site-wide: 9,365 out of 52,976

Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

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  • Downloaded 1,924 times
  • Download rankings, all-time:
    • Site-wide: 1,977 out of 52,976
    • In neuroscience: 273 out of 9,298
  • Year to date:
    • Site-wide: 1,679 out of 52,976
  • Since beginning of last month:
    • Site-wide: 3,403 out of 52,976

Neural data science: accelerating the experiment-analysis-theory cycle in large-scale neuroscience

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  • Downloaded 1,745 times
  • Download rankings, all-time:
    • Site-wide: 2,318 out of 52,976
    • In neuroscience: 334 out of 9,298
  • Year to date:
    • Site-wide: 8,662 out of 52,976
  • Since beginning of last month:
    • Site-wide: 14,960 out of 52,976

Hierarchical recurrent state space models reveal discrete and continuous dynamics of neural activity in C. elegans

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  • Downloaded 1,552 times
  • Download rankings, all-time:
    • Site-wide: 2,829 out of 52,976
    • In neuroscience: 418 out of 9,298
  • Year to date:
    • Site-wide: 271 out of 52,976
  • Since beginning of last month:
    • Site-wide: 44 out of 52,976

The central amygdala controls learning in the lateral amygdala

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  • Downloaded 1,444 times
  • Download rankings, all-time:
    • Site-wide: 3,169 out of 52,976
    • In neuroscience: 469 out of 9,298
  • Year to date:
    • Site-wide: 23,918 out of 52,976
  • Since beginning of last month:
    • Site-wide: 18,346 out of 52,976

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

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  • Downloaded 1,438 times
  • Download rankings, all-time:
    • Site-wide: 3,192 out of 52,976
    • In neuroscience: 474 out of 9,298
  • Year to date:
    • Site-wide: 21,266 out of 52,976
  • Since beginning of last month:
    • Site-wide: 23,505 out of 52,976

Complementary networks of cortical somatostatin interneurons enforce layer specific control

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  • Downloaded 1,401 times
  • Download rankings, all-time:
    • Site-wide: 3,341 out of 52,976
    • In neuroscience: 496 out of 9,298
  • Year to date:
    • Site-wide: 3,101 out of 52,976
  • Since beginning of last month:
    • Site-wide: 12,273 out of 52,976

Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays

neuroscience more details view paper
  • Downloaded 1,165 times
  • Download rankings, all-time:
    • Site-wide: 4,494 out of 52,976
    • In neuroscience: 689 out of 9,298
  • Year to date:
    • Site-wide: 26,355 out of 52,976
  • Since beginning of last month:
    • Site-wide: 24,850 out of 52,976

Multi-scale approaches for high-speed imaging and analysis of large neural populations

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  • Downloaded 1,072 times
  • Download rankings, all-time:
    • Site-wide: 5,133 out of 52,976
    • In neuroscience: 800 out of 9,298
  • Year to date:
    • Site-wide: 45,137 out of 52,976
  • Since beginning of last month:
    • Site-wide: 46,240 out of 52,976

Scalable variational inference for super resolution microscopy

bioinformatics more details view paper
  • Downloaded 829 times
  • Download rankings, all-time:
    • Site-wide: 7,715 out of 52,976
    • In bioinformatics: 1,391 out of 5,530
  • Year to date:
    • Site-wide: 34,359 out of 52,976
  • Since beginning of last month:
    • Site-wide: 33,766 out of 52,976

The Markov link method: a nonparametric approach to combine observations from multiple experiments

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  • Downloaded 778 times
  • Download rankings, all-time:
    • Site-wide: 8,524 out of 52,976
    • In bioinformatics: 1,528 out of 5,530
  • Year to date:
    • Site-wide: 3,078 out of 52,976
  • Since beginning of last month:
    • Site-wide: 10,422 out of 52,976

Scalable approximate Bayesian inference for particle tracking data

bioinformatics more details view paper
  • Downloaded 710 times
  • Download rankings, all-time:
    • Site-wide: 9,719 out of 52,976
    • In bioinformatics: 1,698 out of 5,530
  • Year to date:
    • Site-wide: 13,065 out of 52,976
  • Since beginning of last month:
    • Site-wide: 11,936 out of 52,976

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

neuroscience more details view paper
  • Downloaded 666 times
  • Download rankings, all-time:
    • Site-wide: 10,604 out of 52,976
    • In neuroscience: 1,659 out of 9,298
  • Year to date:
    • Site-wide: 1,377 out of 52,976
  • Since beginning of last month:
    • Site-wide: 166 out of 52,976

A Statistical Model of Shared Variability in the Songbird Auditory System

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  • Downloaded 637 times
  • Download rankings, all-time:
    • Site-wide: 11,276 out of 52,976
    • In neuroscience: 1,778 out of 9,298
  • Year to date:
    • Site-wide: 41,419 out of 52,976
  • Since beginning of last month:
    • Site-wide: 39,000 out of 52,976

A zero-inflated gamma model for post-deconvolved calcium imaging traces

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  • Downloaded 164 times
  • Download rankings, all-time:
    • Site-wide: 39,469 out of 52,976
    • In neuroscience: 6,847 out of 9,298
  • Year to date:
    • Site-wide: 12,704 out of 52,976
  • Since beginning of last month:
    • Site-wide: 1,953 out of 52,976

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