Rxivist logo

Author: Liam Paninski

  • Most recently observed institution: Columbia University

Rankings

  • All-time downloads: 62,143 (rank: 2,269 )
  • Categories:
    • animal behavior and cognition: 1,750 (rank: 590 (tie) )
    • bioinformatics: 3,170 (rank: 4,234 (tie) )
    • genomics: 463 (rank: 36,521 (tie) )
    • neuroscience: 56,760 (rank: 26 )

Downloads per author, site-wide

Preprints

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

neuroscience more details view paper
  • Downloaded 11,179 times
  • Download rankings, all-time:
    • Site-wide: 722
    • In neuroscience: 30
  • Year to date:
    • Site-wide: 11,919
  • Since beginning of last month:
    • Site-wide: 19,946

NeuroPAL: A Neuronal Polychromatic Atlas of Landmarks for Whole-Brain Imaging in C. elegans

neuroscience more details view paper
  • Downloaded 5,877 times
  • Download rankings, all-time:
    • Site-wide: 1,676
    • In neuroscience: 83
  • Year to date:
    • Site-wide: 3,126
  • Since beginning of last month:
    • Site-wide: 13,402

Hierarchical recurrent state space models reveal discrete and continuous dynamics of neural activity in C. elegans

neuroscience more details view paper
  • Downloaded 5,393 times
  • Download rankings, all-time:
    • Site-wide: 1,874
    • In neuroscience: 101
  • Year to date:
    • Site-wide: 5,276
  • Since beginning of last month:
    • Site-wide: 8,811

Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

neuroscience more details view paper
  • Downloaded 3,558 times
  • Download rankings, all-time:
    • Site-wide: 3,383
    • In neuroscience: 263
  • Year to date:
    • Site-wide: 12,605
  • Since beginning of last month:
    • Site-wide: 21,609

Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

neuroscience more details view paper
  • Downloaded 3,396 times
  • Download rankings, all-time:
    • Site-wide: 3,612
    • In neuroscience: 291
  • Year to date:
    • Site-wide: 19,276
  • Since beginning of last month:
    • Site-wide: 16,134

YASS: Yet Another Spike Sorter

neuroscience more details view paper
  • Downloaded 2,852 times
  • Download rankings, all-time:
    • Site-wide: 4,607
    • In neuroscience: 408
  • Year to date:
    • Site-wide: 32,658
  • Since beginning of last month:
    • Site-wide: 43,365

OnACID: Online Analysis of Calcium Imaging Data in Real Time

neuroscience more details view paper
  • Downloaded 2,511 times
  • Download rankings, all-time:
    • Site-wide: 5,568
    • In neuroscience: 517
  • Year to date:
    • Site-wide: 40,032
  • Since beginning of last month:
    • Site-wide: 38,248

Multiscale and multimodal reconstruction of cortical structure and function

neuroscience more details view paper
  • Downloaded 2,368 times
  • Download rankings, all-time:
    • Site-wide: 6,092
    • In neuroscience: 570
  • Year to date:
    • Site-wide: 3,793
  • Since beginning of last month:
    • Site-wide: 4,710

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

neuroscience more details view paper
  • Downloaded 2,216 times
  • Download rankings, all-time:
    • Site-wide: 6,685
    • In neuroscience: 651
  • Year to date:
    • Site-wide: 71,773
  • Since beginning of last month:
    • Site-wide: 119,196

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

neuroscience more details view paper
  • Downloaded 1,966 times
  • Download rankings, all-time:
    • Site-wide: 7,970
    • In neuroscience: 811
  • Year to date:
    • Site-wide: 45,059
  • Since beginning of last month:
    • Site-wide: 76,654

Deep Graph Pose: a semi-supervised deep graphical model for improved animal pose tracking

animal behavior and cognition more details view paper
  • Downloaded 1,750 times
  • Download rankings, all-time:
    • Site-wide: 9,521
    • In animal behavior and cognition: 67
  • Year to date:
    • Site-wide: 2,834
  • Since beginning of last month:
    • Site-wide: 2,851

Complementary networks of cortical somatostatin interneurons enforce layer specific control

neuroscience more details view paper
  • Downloaded 1,737 times
  • Download rankings, all-time:
    • Site-wide: 9,634
    • In neuroscience: 1,017
  • Year to date:
    • Site-wide: 109,491
  • Since beginning of last month:
    • Site-wide: 106,313

The central amygdala controls learning in the lateral amygdala

neuroscience more details view paper
  • Downloaded 1,685 times
  • Download rankings, all-time:
    • Site-wide: 10,065
    • In neuroscience: 1,070
  • Year to date:
    • Site-wide: 96,274
  • Since beginning of last month:
    • Site-wide: 104,638

High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo

neuroscience more details view paper
  • Downloaded 1,454 times
  • Download rankings, all-time:
    • Site-wide: 12,464
    • In neuroscience: 1,407
  • Year to date:
    • Site-wide: 21,028
  • Since beginning of last month:
    • Site-wide: 18,699

Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays

neuroscience more details view paper
  • Downloaded 1,436 times
  • Download rankings, all-time:
    • Site-wide: 12,720
    • In neuroscience: 1,444
  • Year to date:
    • Site-wide: 90,443
  • Since beginning of last month:
    • Site-wide: 127,111

EASE: EM-Assisted Source Extraction from calcium imaging data

neuroscience more details view paper
  • Downloaded 1,331 times
  • Download rankings, all-time:
    • Site-wide: 14,291
    • In neuroscience: 1,664
  • Year to date:
    • Site-wide: 24,558
  • Since beginning of last month:
    • Site-wide: 29,688

Multi-scale approaches for high-speed imaging and analysis of large neural populations

neuroscience more details view paper
  • Downloaded 1,239 times
  • Download rankings, all-time:
    • Site-wide: 15,921
    • In neuroscience: 1,929
  • Year to date:
    • Site-wide: 92,712
  • Since beginning of last month:
    • Site-wide: 93,770

The Markov link method: a nonparametric approach to combine observations from multiple experiments

bioinformatics more details view paper
  • Downloaded 1,174 times
  • Download rankings, all-time:
    • Site-wide: 17,248
    • In bioinformatics: 2,055
  • Year to date:
    • Site-wide: 80,064
  • Since beginning of last month:
    • Site-wide: 121,232

YASS: Yet Another Spike Sorter applied to large-scale multi-electrode array recordings in primate retina

neuroscience more details view paper
  • Downloaded 1,103 times
  • Download rankings, all-time:
    • Site-wide: 18,884
    • In neuroscience: 2,350
  • Year to date:
    • Site-wide: 10,640
  • Since beginning of last month:
    • Site-wide: 20,205

Recurrent Switching Dynamical Systems Models for Multiple Interacting Neural Populations

neuroscience more details view paper
  • Downloaded 1,100 times
  • Download rankings, all-time:
    • Site-wide: 18,967
    • In neuroscience: 2,362
  • Year to date:
    • Site-wide: 4,068
  • Since beginning of last month:
    • Site-wide: 9,708

Scalable variational inference for super resolution microscopy

bioinformatics more details view paper
  • Downloaded 1,012 times
  • Download rankings, all-time:
    • Site-wide: 21,442
    • In bioinformatics: 2,525
  • Year to date:
    • Site-wide: 129,287
  • Since beginning of last month:
    • Site-wide: 118,689

A zero-inflated gamma model for post-deconvolved calcium imaging traces

neuroscience more details view paper
  • Downloaded 1,007 times
  • Download rankings, all-time:
    • Site-wide: 21,585
    • In neuroscience: 2,746
  • Year to date:
    • Site-wide: 26,904
  • Since beginning of last month:
    • Site-wide: 22,423

Scalable approximate Bayesian inference for particle tracking data

bioinformatics more details view paper
  • Downloaded 984 times
  • Download rankings, all-time:
    • Site-wide: 22,306
    • In bioinformatics: 2,614
  • Year to date:
    • Site-wide: 111,157
  • Since beginning of last month:
    • Site-wide: 108,098

Neuroscience Cloud Analysis As a Service

neuroscience more details view paper
  • Downloaded 795 times
  • Download rankings, all-time:
    • Site-wide: 30,233
    • In neuroscience: 4,052
  • Year to date:
    • Site-wide: 13,721
  • Since beginning of last month:
    • Site-wide: 14,031

A Statistical Model of Shared Variability in the Songbird Auditory System

neuroscience more details view paper
  • Downloaded 792 times
  • Download rankings, all-time:
    • Site-wide: 30,407
    • In neuroscience: 4,072
  • Year to date:
    • Site-wide: 126,423
  • Since beginning of last month:
    • Site-wide: 87,192

Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders

neuroscience more details view paper
  • Downloaded 588 times
  • Download rankings, all-time:
    • Site-wide: 45,085
    • In neuroscience: 6,476
  • Year to date:
    • Site-wide: 3,350
  • Since beginning of last month:
    • Site-wide: None

Extracting neural signals from semi-immobilized animals with deformable non-negative matrix factorization

neuroscience more details view paper
  • Downloaded 515 times
  • Download rankings, all-time:
    • Site-wide: 52,931
    • In neuroscience: 7,780
  • Year to date:
    • Site-wide: 30,607
  • Since beginning of last month:
    • Site-wide: 41,096

Nonlinear decoding of natural images from large-scale primate retinal ganglion recordings

neuroscience more details view paper
  • Downloaded 480 times
  • Download rankings, all-time:
    • Site-wide: 57,437
    • In neuroscience: 8,497
  • Year to date:
    • Site-wide: 21,519
  • Since beginning of last month:
    • Site-wide: 24,963

BARcode DEmixing through Non-negative Spatial Regression (BarDensr)

genomics more details view paper
  • Downloaded 463 times
  • Download rankings, all-time:
    • Site-wide: 59,594
    • In genomics: 4,393
  • Year to date:
    • Site-wide: 33,191
  • Since beginning of last month:
    • Site-wide: 47,786

Visualizing the organization and differentiation of the male-specific nervous system of C. elegans

neuroscience more details view paper
  • Downloaded 182 times
  • Download rankings, all-time:
    • Site-wide: 114,723
    • In neuroscience: 17,691
  • Year to date:
    • Site-wide: 17,493
  • Since beginning of last month:
    • Site-wide: 3,224

PanLingua

News