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Author: Liam Paninski

  • Most recently observed institution: Kavli Institute for Brain Science at Columbia University

Rankings

  • All-time downloads: 52,594 (rank: 775 out of 428,651)
  • Categories:
    • animal behavior and cognition: 760 (rank: 1,280 (tie) out of 6,103)
    • bioinformatics: 3,050 (rank: 3,729 (tie) out of 36,261)
    • genomics: 252 (rank: 39,268 (tie) out of 44,721)
    • neuroscience: 48,532 (rank: 22 out of 72,544)

Downloads per author, site-wide

Preprints

Recurrent Switching Dynamical Systems Models for Multiple Interacting Neural Populations

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Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

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  • Downloaded 10,848 times
  • Download rankings, all-time:
    • Site-wide: 243 out of 101,463
    • In neuroscience: 25 out of 18,074
  • Year to date:
    • Site-wide: 2,859 out of 101,463
  • Since beginning of last month:
    • Site-wide: 14,501 out of 101,463

NeuroPAL: A Neuronal Polychromatic Atlas of Landmarks for Whole-Brain Imaging in C. elegans

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  • Downloaded 4,736 times
  • Download rankings, all-time:
    • Site-wide: 969 out of 101,463
    • In neuroscience: 100 out of 18,074
  • Year to date:
    • Site-wide: 952 out of 101,463
  • Since beginning of last month:
    • Site-wide: 643 out of 101,463

Hierarchical recurrent state space models reveal discrete and continuous dynamics of neural activity in C. elegans

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  • Downloaded 4,718 times
  • Download rankings, all-time:
    • Site-wide: 979 out of 101,463
    • In neuroscience: 101 out of 18,074
  • Year to date:
    • Site-wide: 1,258 out of 101,463
  • Since beginning of last month:
    • Site-wide: 2,862 out of 101,463

Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

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  • Downloaded 3,178 times
  • Download rankings, all-time:
    • Site-wide: 1,958 out of 101,463
    • In neuroscience: 254 out of 18,074
  • Year to date:
    • Site-wide: 4,535 out of 101,463
  • Since beginning of last month:
    • Site-wide: 5,294 out of 101,463

Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

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  • Downloaded 3,160 times
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    • Site-wide: 1,982 out of 101,463
    • In neuroscience: 255 out of 18,074
  • Year to date:
    • Site-wide: 12,117 out of 101,463
  • Since beginning of last month:
    • Site-wide: 14,296 out of 101,463

YASS: Yet Another Spike Sorter

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  • Downloaded 2,708 times
  • Download rankings, all-time:
    • Site-wide: 2,531 out of 101,463
    • In neuroscience: 339 out of 18,074
  • Year to date:
    • Site-wide: 20,929 out of 101,463
  • Since beginning of last month:
    • Site-wide: 22,914 out of 101,463

OnACID: Online Analysis of Calcium Imaging Data in Real Time

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  • Downloaded 2,393 times
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    • Site-wide: 3,142 out of 101,463
    • In neuroscience: 435 out of 18,074
  • Year to date:
    • Site-wide: 25,865 out of 101,463
  • Since beginning of last month:
    • Site-wide: 19,093 out of 101,463

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

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  • Downloaded 2,134 times
  • Download rankings, all-time:
    • Site-wide: 3,801 out of 101,463
    • In neuroscience: 537 out of 18,074
  • Year to date:
    • Site-wide: 4,913 out of 101,463
  • Since beginning of last month:
    • Site-wide: 28,035 out of 101,463

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

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  • Downloaded 1,830 times
  • Download rankings, all-time:
    • Site-wide: 4,918 out of 101,463
    • In neuroscience: 717 out of 18,074
  • Year to date:
    • Site-wide: 20,323 out of 101,463
  • Since beginning of last month:
    • Site-wide: 16,231 out of 101,463

Complementary networks of cortical somatostatin interneurons enforce layer specific control

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  • Downloaded 1,683 times
  • Download rankings, all-time:
    • Site-wide: 5,610 out of 101,463
    • In neuroscience: 826 out of 18,074
  • Year to date:
    • Site-wide: 46,921 out of 101,463
  • Since beginning of last month:
    • Site-wide: 39,342 out of 101,463

The central amygdala controls learning in the lateral amygdala

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  • Downloaded 1,634 times
  • Download rankings, all-time:
    • Site-wide: 5,931 out of 101,463
    • In neuroscience: 868 out of 18,074
  • Year to date:
    • Site-wide: 66,612 out of 101,463
  • Since beginning of last month:
    • Site-wide: 75,558 out of 101,463

Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays

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  • Downloaded 1,374 times
  • Download rankings, all-time:
    • Site-wide: 7,950 out of 101,463
    • In neuroscience: 1,206 out of 18,074
  • Year to date:
    • Site-wide: 54,337 out of 101,463
  • Since beginning of last month:
    • Site-wide: 56,016 out of 101,463

Multiscale and multimodal reconstruction of cortical structure and function

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  • Downloaded 1,287 times
  • Download rankings, all-time:
    • Site-wide: 8,898 out of 101,463
    • In neuroscience: 1,352 out of 18,074
  • Year to date:
    • Site-wide: 1,809 out of 101,463
  • Since beginning of last month:
    • Site-wide: 107 out of 101,463

High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo

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  • Downloaded 1,205 times
  • Download rankings, all-time:
    • Site-wide: 9,937 out of 101,463
    • In neuroscience: 1,526 out of 18,074
  • Year to date:
    • Site-wide: 2,000 out of 101,463
  • Since beginning of last month:
    • Site-wide: 9,476 out of 101,463

Multi-scale approaches for high-speed imaging and analysis of large neural populations

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  • Downloaded 1,189 times
  • Download rankings, all-time:
    • Site-wide: 10,184 out of 101,463
    • In neuroscience: 1,573 out of 18,074
  • Year to date:
    • Site-wide: 84,925 out of 101,463
  • Since beginning of last month:
    • Site-wide: 94,866 out of 101,463

The Markov link method: a nonparametric approach to combine observations from multiple experiments

bioinformatics more details view paper
  • Downloaded 1,114 times
  • Download rankings, all-time:
    • Site-wide: 11,306 out of 101,463
    • In bioinformatics: 1,805 out of 9,301
  • Year to date:
    • Site-wide: 36,438 out of 101,463
  • Since beginning of last month:
    • Site-wide: 56,310 out of 101,463

EASE: EM-Assisted Source Extraction from calcium imaging data

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  • Downloaded 1,106 times
  • Download rankings, all-time:
    • Site-wide: 11,437 out of 101,463
    • In neuroscience: 1,794 out of 18,074
  • Year to date:
    • Site-wide: 2,274 out of 101,463
  • Since beginning of last month:
    • Site-wide: 7,302 out of 101,463

Scalable variational inference for super resolution microscopy

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  • Downloaded 982 times
  • Download rankings, all-time:
    • Site-wide: 13,846 out of 101,463
    • In bioinformatics: 2,151 out of 9,301
  • Year to date:
    • Site-wide: 69,817 out of 101,463
  • Since beginning of last month:
    • Site-wide: 84,363 out of 101,463

Scalable approximate Bayesian inference for particle tracking data

bioinformatics more details view paper
  • Downloaded 954 times
  • Download rankings, all-time:
    • Site-wide: 14,497 out of 101,463
    • In bioinformatics: 2,223 out of 9,301
  • Year to date:
    • Site-wide: 47,842 out of 101,463
  • Since beginning of last month:
    • Site-wide: 73,727 out of 101,463

A zero-inflated gamma model for post-deconvolved calcium imaging traces

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  • Downloaded 800 times
  • Download rankings, all-time:
    • Site-wide: 19,139 out of 101,463
    • In neuroscience: 3,106 out of 18,074
  • Year to date:
    • Site-wide: 13,712 out of 101,463
  • Since beginning of last month:
    • Site-wide: 11,928 out of 101,463

Deep Graph Pose: a semi-supervised deep graphical model for improved animal pose tracking

animal behavior and cognition more details view paper
  • Downloaded 760 times
  • Download rankings, all-time:
    • Site-wide: 20,598 out of 101,463
    • In animal behavior and cognition: 218 out of 1,572
  • Year to date:
    • Site-wide: 4,005 out of 101,463
  • Since beginning of last month:
    • Site-wide: 694 out of 101,463

A Statistical Model of Shared Variability in the Songbird Auditory System

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  • Downloaded 758 times
  • Download rankings, all-time:
    • Site-wide: 20,704 out of 101,463
    • In neuroscience: 3,389 out of 18,074
  • Year to date:
    • Site-wide: 81,985 out of 101,463
  • Since beginning of last month:
    • Site-wide: 87,644 out of 101,463

YASS: Yet Another Spike Sorter applied to large-scale multi-electrode array recordings in primate retina

neuroscience more details view paper
  • Downloaded 733 times
  • Download rankings, all-time:
    • Site-wide: 21,722 out of 101,463
    • In neuroscience: 3,576 out of 18,074
  • Year to date:
    • Site-wide: 4,226 out of 101,463
  • Since beginning of last month:
    • Site-wide: 4,819 out of 101,463

Neuroscience Cloud Analysis As a Service

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  • Downloaded 468 times
  • Download rankings, all-time:
    • Site-wide: 39,594 out of 101,463
    • In neuroscience: 6,824 out of 18,074
  • Year to date:
    • Site-wide: 8,523 out of 101,463
  • Since beginning of last month:
    • Site-wide: 7,044 out of 101,463

Extracting neural signals from semi-immobilized animals with deformable non-negative matrix factorization

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  • Downloaded 323 times
  • Download rankings, all-time:
    • Site-wide: 57,808 out of 101,463
    • In neuroscience: 10,211 out of 18,074
  • Year to date:
    • Site-wide: 15,007 out of 101,463
  • Since beginning of last month:
    • Site-wide: 9,335 out of 101,463

Nonlinear decoding of natural images from large-scale primate retinal ganglion recordings

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  • Downloaded 267 times
  • Download rankings, all-time:
    • Site-wide: 66,843 out of 101,463
    • In neuroscience: 11,862 out of 18,074
  • Year to date:
    • Site-wide: 19,801 out of 101,463
  • Since beginning of last month:
    • Site-wide: 1,630 out of 101,463

BARcode DEmixing through Non-negative Spatial Regression (BarDensr)

genomics more details view paper
  • Downloaded 252 times
  • Download rankings, all-time:
    • Site-wide: 69,538 out of 101,463
    • In genomics: 5,123 out of 6,285
  • Year to date:
    • Site-wide: 21,438 out of 101,463
  • Since beginning of last month:
    • Site-wide: 7,893 out of 101,463

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