Author: Liam Paninski

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Preprints

Recurrent Switching Dynamical Systems Models for Multiple Interacting Neural Populations

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Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

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NeuroPAL: A Neuronal Polychromatic Atlas of Landmarks for Whole-Brain Imaging in C. elegans

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Hierarchical recurrent state space models reveal discrete and continuous dynamics of neural activity in C. elegans

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Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

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Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

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YASS: Yet Another Spike Sorter

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OnACID: Online Analysis of Calcium Imaging Data in Real Time

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Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

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Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

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Complementary networks of cortical somatostatin interneurons enforce layer specific control

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The central amygdala controls learning in the lateral amygdala

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Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays

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Multiscale and multimodal reconstruction of cortical structure and function

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High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo

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Multi-scale approaches for high-speed imaging and analysis of large neural populations

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The Markov link method: a nonparametric approach to combine observations from multiple experiments

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EASE: EM-Assisted Source Extraction from calcium imaging data

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Scalable variational inference for super resolution microscopy

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Scalable approximate Bayesian inference for particle tracking data

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A zero-inflated gamma model for post-deconvolved calcium imaging traces

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Deep Graph Pose: a semi-supervised deep graphical model for improved animal pose tracking

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A Statistical Model of Shared Variability in the Songbird Auditory System

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YASS: Yet Another Spike Sorter applied to large-scale multi-electrode array recordings in primate retina

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Neuroscience Cloud Analysis As a Service

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Extracting neural signals from semi-immobilized animals with deformable non-negative matrix factorization

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Nonlinear decoding of natural images from large-scale primate retinal ganglion recordings

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BARcode DEmixing through Non-negative Spatial Regression (BarDensr)

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