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Author: Liam Paninski

Rankings

  • All-time downloads: 88,771 (rank: 2,698 )
  • Categories:
    • animal behavior and cognition: 3,610 (rank: 278 (tie) )
    • bioinformatics: 3,626 (rank: 5,798 (tie) )
    • genomics: 910 (rank: 33,811 (tie) )
    • neuroscience: 79,348 (rank: 26 )

Downloads per author, site-wide

Preprints

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

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  • Downloaded 12,525 times
  • Download rankings, all-time:
    • Site-wide: 1,044
    • In neuroscience: 35
  • Year to date:
    • Site-wide: 5,463
  • Since beginning of last month:
    • Site-wide: 7,789

Hierarchical recurrent state space models reveal discrete and continuous dynamics of neural activity in C. elegans

neuroscience more details view paper
  • Downloaded 7,443 times
  • Download rankings, all-time:
    • Site-wide: 2,015
    • In neuroscience: 93
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 6,002

NeuroPAL: A Neuronal Polychromatic Atlas of Landmarks for Whole-Brain Imaging in C. elegans

neuroscience more details view paper
  • Downloaded 6,830 times
  • Download rankings, all-time:
    • Site-wide: 2,290
    • In neuroscience: 106
  • Year to date:
    • Site-wide: 61,715
  • Since beginning of last month:
    • Site-wide: 15,743

Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

neuroscience more details view paper
  • Downloaded 4,391 times
  • Download rankings, all-time:
    • Site-wide: 4,184
    • In neuroscience: 287
  • Year to date:
    • Site-wide: 26,193
  • Since beginning of last month:
    • Site-wide: 13,040

Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

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  • Downloaded 3,951 times
  • Download rankings, all-time:
    • Site-wide: 4,892
    • In neuroscience: 370
  • Year to date:
    • Site-wide: 20,359
  • Since beginning of last month:
    • Site-wide: 51,830

Multiscale and multimodal reconstruction of cortical structure and function

neuroscience more details view paper
  • Downloaded 3,460 times
  • Download rankings, all-time:
    • Site-wide: 5,930
    • In neuroscience: 466
  • Year to date:
    • Site-wide: 19,540
  • Since beginning of last month:
    • Site-wide: 30,432

Reproducibility of in-vivo electrophysiological measurements in mice

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  • Downloaded 3,437 times
  • Download rankings, all-time:
    • Site-wide: 5,996
    • In neuroscience: 518
  • Year to date:
    • Site-wide: 1,030
  • Since beginning of last month:
    • Site-wide: 1,601

YASS: Yet Another Spike Sorter

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  • Downloaded 3,121 times
  • Download rankings, all-time:
    • Site-wide: 6,911
    • In neuroscience: 598
  • Year to date:
    • Site-wide: 165,572
  • Since beginning of last month:
    • Site-wide: 117,909

OnACID: Online Analysis of Calcium Imaging Data in Real Time

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  • Downloaded 2,875 times
  • Download rankings, all-time:
    • Site-wide: 7,747
    • In neuroscience: 674
  • Year to date:
    • Site-wide: 133,211
  • Since beginning of last month:
    • Site-wide: 196,944

Deep Graph Pose: a semi-supervised deep graphical model for improved animal pose tracking

animal behavior and cognition more details view paper
  • Downloaded 2,674 times
  • Download rankings, all-time:
    • Site-wide: 8,649
    • In animal behavior and cognition: 50
  • Year to date:
    • Site-wide: 28,995
  • Since beginning of last month:
    • Site-wide: 22,110

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

neuroscience more details view paper
  • Downloaded 2,405 times
  • Download rankings, all-time:
    • Site-wide: 10,160
    • In neuroscience: 965
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 145,113

Flygenvectors: The spatial and temporal structure of neural activity across the fly brain

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  • Downloaded 2,346 times
  • Download rankings, all-time:
    • Site-wide: 10,568
    • In neuroscience: 1,113
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 8,237

Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders

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  • Downloaded 2,254 times
  • Download rankings, all-time:
    • Site-wide: 11,219
    • In neuroscience: 1,086
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 31,449

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

neuroscience more details view paper
  • Downloaded 2,214 times
  • Download rankings, all-time:
    • Site-wide: 11,519
    • In neuroscience: 1,132
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 93,594

Recurrent Switching Dynamical Systems Models for Multiple Interacting Neural Populations

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  • Downloaded 2,182 times
  • Download rankings, all-time:
    • Site-wide: 11,786
    • In neuroscience: 1,170
  • Year to date:
    • Site-wide: 66,919
  • Since beginning of last month:
    • Site-wide: 39,055

YASS: Yet Another Spike Sorter applied to large-scale multi-electrode array recordings in primate retina

neuroscience more details view paper
  • Downloaded 2,006 times
  • Download rankings, all-time:
    • Site-wide: 13,366
    • In neuroscience: 1,379
  • Year to date:
    • Site-wide: 89,644
  • Since beginning of last month:
    • Site-wide: 14,945

EASE: EM-Assisted Source Extraction from calcium imaging data

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  • Downloaded 1,917 times
  • Download rankings, all-time:
    • Site-wide: 14,335
    • In neuroscience: 1,503
  • Year to date:
    • Site-wide: 46,223
  • Since beginning of last month:
    • Site-wide: 38,817

Complementary networks of cortical somatostatin interneurons enforce layer specific control

neuroscience more details view paper
  • Downloaded 1,908 times
  • Download rankings, all-time:
    • Site-wide: 14,434
    • In neuroscience: 1,520
  • Year to date:
    • Site-wide: 136,465
  • Since beginning of last month:
    • Site-wide: 20,097

Neuroscience Cloud Analysis As a Service

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  • Downloaded 1,892 times
  • Download rankings, all-time:
    • Site-wide: 14,609
    • In neuroscience: 1,552
  • Year to date:
    • Site-wide: 24,070
  • Since beginning of last month:
    • Site-wide: 18,664

The central amygdala controls learning in the lateral amygdala

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  • Downloaded 1,821 times
  • Download rankings, all-time:
    • Site-wide: 15,542
    • In neuroscience: 1,635
  • Year to date:
    • Site-wide: 189,606
  • Since beginning of last month:
    • Site-wide: 208,778

High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo

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  • Downloaded 1,630 times
  • Download rankings, all-time:
    • Site-wide: 18,448
    • In neuroscience: 2,059
  • Year to date:
    • Site-wide: 64,893
  • Since beginning of last month:
    • Site-wide: 187,635

Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays

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  • Downloaded 1,558 times
  • Download rankings, all-time:
    • Site-wide: 19,809
    • In neuroscience: 2,242
  • Year to date:
    • Site-wide: 190,532
  • Since beginning of last month:
    • Site-wide: 148,934

The Markov link method: a nonparametric approach to combine observations from multiple experiments

bioinformatics more details view paper
  • Downloaded 1,392 times
  • Download rankings, all-time:
    • Site-wide: 23,776
    • In bioinformatics: 2,614
  • Year to date:
    • Site-wide: 114,829
  • Since beginning of last month:
    • Site-wide: 59,654

A zero-inflated gamma model for post-deconvolved calcium imaging traces

neuroscience more details view paper
  • Downloaded 1,342 times
  • Download rankings, all-time:
    • Site-wide: 25,182
    • In neuroscience: 3,040
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 59,691

Multi-scale approaches for high-speed imaging and analysis of large neural populations

neuroscience more details view paper
  • Downloaded 1,322 times
  • Download rankings, all-time:
    • Site-wide: 25,809
    • In neuroscience: 3,074
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 176,285

Scalable variational inference for super resolution microscopy

bioinformatics more details view paper
  • Downloaded 1,139 times
  • Download rankings, all-time:
    • Site-wide: 32,653
    • In bioinformatics: 3,438
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 174,237

Scalable approximate Bayesian inference for particle tracking data

bioinformatics more details view paper
  • Downloaded 1,114 times
  • Download rankings, all-time:
    • Site-wide: 33,780
    • In bioinformatics: 3,565
  • Year to date:
    • Site-wide: 165,675
  • Since beginning of last month:
    • Site-wide: 173,974

Rapid learning of neural circuitry from holographic ensemble stimulation enabled by model-based compressed sensing

neuroscience more details view paper
  • Downloaded 1,052 times
  • Download rankings, all-time:
    • Site-wide: 36,840
    • In neuroscience: 5,571
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 4,539

Semi-supervised sequence modeling for improved behavioral segmentation

animal behavior and cognition more details view paper
  • Downloaded 992 times
  • Download rankings, all-time:
    • Site-wide: 40,401
    • In animal behavior and cognition: 338
  • Year to date:
    • Site-wide: 8,217
  • Since beginning of last month:
    • Site-wide: 13,229

Extracting neural signals from semi-immobilized animals with deformable non-negative matrix factorization

neuroscience more details view paper
  • Downloaded 943 times
  • Download rankings, all-time:
    • Site-wide: 43,638
    • In neuroscience: 5,779
  • Year to date:
    • Site-wide: 185,370
  • Since beginning of last month:
    • Site-wide: 34,352

A Statistical Model of Shared Variability in the Songbird Auditory System

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  • Downloaded 920 times
  • Download rankings, all-time:
    • Site-wide: 45,305
    • In neuroscience: 5,930
  • Year to date:
    • Site-wide: 97,548
  • Since beginning of last month:
    • Site-wide: 196,611

BARcode DEmixing through Non-negative Spatial Regression (BarDensr)

genomics more details view paper
  • Downloaded 912 times
  • Download rankings, all-time:
    • Site-wide: 45,948
    • In genomics: 3,452
  • Year to date:
    • Site-wide: 156,846
  • Since beginning of last month:
    • Site-wide: 79,224

Nonlinear decoding of natural images from large-scale primate retinal ganglion recordings

neuroscience more details view paper
  • Downloaded 827 times
  • Download rankings, all-time:
    • Site-wide: 53,387
    • In neuroscience: 7,321
  • Year to date:
    • Site-wide: 81,938
  • Since beginning of last month:
    • Site-wide: 52,770

Visualizing the organization and differentiation of the male-specific nervous system of C. elegans

neuroscience more details view paper
  • Downloaded 584 times
  • Download rankings, all-time:
    • Site-wide: 86,654
    • In neuroscience: 12,539
  • Year to date:
    • Site-wide: 74,586
  • Since beginning of last month:
    • Site-wide: 61,702

Three-dimensional spike localization and improved motion correction for Neuropixels recordings

neuroscience more details view paper
  • Downloaded 579 times
  • Download rankings, all-time:
    • Site-wide: 87,537
    • In neuroscience: 13,024
  • Year to date:
    • Site-wide: 9,953
  • Since beginning of last month:
    • Site-wide: 63,478

Versatile Multiple Object Tracking in Sparse 2D/3D Videos Via Diffeomorphic Image Registration

neuroscience more details view paper
  • Downloaded 362 times
  • Download rankings, all-time:
    • Site-wide: 141,232
    • In neuroscience: 23,856
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 12,867

Improved blind demixing methods for recovering dense neuronal morphology from barcode imaging data

neuroscience more details view paper
  • Downloaded 331 times
  • Download rankings, all-time:
    • Site-wide: 150,604
    • In neuroscience: 22,238
  • Year to date:
    • Site-wide: 59,223
  • Since beginning of last month:
    • Site-wide: 113,171

Robust online multiband drift estimation in electrophysiology data

neuroscience more details view paper
  • Downloaded 120 times
  • Download rankings, all-time:
    • Site-wide: 203,946
    • In neuroscience: None
  • Year to date:
    • Site-wide: 51,784
  • Since beginning of last month:
    • Site-wide: 1,913

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