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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,616 bioRxiv papers from 308,268 authors.

Author: Liam Paninski

  • Most recently observed institution: Columbia University

Rankings

  • All-time downloads: 38,412 (rank: 439 (tie) out of 308,298)
  • Categories:
    • bioinformatics: 2,683 (rank: 2,905 out of 26,826)
    • neuroscience: 35,729 (rank: 26 out of 52,020)

Downloads per author, site-wide

Preprints

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

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  • Downloaded 9,986 times
  • Download rankings, all-time:
    • Site-wide: 127 out of 70,616
    • In neuroscience: 21 out of 12,704
  • Year to date:
    • Site-wide: 1,167 out of 70,616
  • Since beginning of last month:
    • Site-wide: 1,257 out of 70,616

Hierarchical recurrent state space models reveal discrete and continuous dynamics of neural activity in C. elegans

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  • Downloaded 3,149 times
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    • Site-wide: 1,150 out of 70,616
    • In neuroscience: 167 out of 12,704
  • Year to date:
    • Site-wide: 2,433 out of 70,616
  • Since beginning of last month:
    • Site-wide: 865 out of 70,616

NeuroPAL: A Neuronal Polychromatic Atlas of Landmarks for Whole-Brain Imaging in C. elegans

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  • Downloaded 2,907 times
  • Download rankings, all-time:
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    • In neuroscience: 195 out of 12,704
  • Year to date:
    • Site-wide: 784 out of 70,616
  • Since beginning of last month:
    • Site-wide: 1,006 out of 70,616

Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

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  • Downloaded 2,807 times
  • Download rankings, all-time:
    • Site-wide: 1,409 out of 70,616
    • In neuroscience: 207 out of 12,704
  • Year to date:
    • Site-wide: 8,477 out of 70,616
  • Since beginning of last month:
    • Site-wide: 11,347 out of 70,616

Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

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  • Downloaded 2,495 times
  • Download rankings, all-time:
    • Site-wide: 1,738 out of 70,616
    • In neuroscience: 252 out of 12,704
  • Year to date:
    • Site-wide: 9,502 out of 70,616
  • Since beginning of last month:
    • Site-wide: 3,120 out of 70,616

YASS: Yet Another Spike Sorter

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  • Downloaded 2,467 times
  • Download rankings, all-time:
    • Site-wide: 1,780 out of 70,616
    • In neuroscience: 257 out of 12,704
  • Year to date:
    • Site-wide: 11,590 out of 70,616
  • Since beginning of last month:
    • Site-wide: 26,063 out of 70,616

OnACID: Online Analysis of Calcium Imaging Data in Real Time

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  • Downloaded 2,186 times
  • Download rankings, all-time:
    • Site-wide: 2,213 out of 70,616
    • In neuroscience: 330 out of 12,704
  • Year to date:
    • Site-wide: 13,906 out of 70,616
  • Since beginning of last month:
    • Site-wide: 27,727 out of 70,616

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

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  • Downloaded 1,573 times
  • Download rankings, all-time:
    • Site-wide: 3,883 out of 70,616
    • In neuroscience: 611 out of 12,704
  • Year to date:
    • Site-wide: 50,311 out of 70,616
  • Since beginning of last month:
    • Site-wide: 18,682 out of 70,616

Complementary networks of cortical somatostatin interneurons enforce layer specific control

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  • Downloaded 1,555 times
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    • Site-wide: 3,952 out of 70,616
    • In neuroscience: 622 out of 12,704
  • Year to date:
    • Site-wide: 30,030 out of 70,616
  • Since beginning of last month:
    • Site-wide: 28,445 out of 70,616

The central amygdala controls learning in the lateral amygdala

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  • Downloaded 1,544 times
  • Download rankings, all-time:
    • Site-wide: 4,005 out of 70,616
    • In neuroscience: 627 out of 12,704
  • Year to date:
    • Site-wide: 42,794 out of 70,616
  • Since beginning of last month:
    • Site-wide: 47,338 out of 70,616

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

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  • Downloaded 1,518 times
  • Download rankings, all-time:
    • Site-wide: 4,141 out of 70,616
    • In neuroscience: 648 out of 12,704
  • Year to date:
    • Site-wide: 2,367 out of 70,616
  • Since beginning of last month:
    • Site-wide: 2,109 out of 70,616

Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays

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  • Downloaded 1,262 times
  • Download rankings, all-time:
    • Site-wide: 5,608 out of 70,616
    • In neuroscience: 876 out of 12,704
  • Year to date:
    • Site-wide: 35,683 out of 70,616
  • Since beginning of last month:
    • Site-wide: 38,172 out of 70,616

Multi-scale approaches for high-speed imaging and analysis of large neural populations

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  • Downloaded 1,122 times
  • Download rankings, all-time:
    • Site-wide: 6,869 out of 70,616
    • In neuroscience: 1,094 out of 12,704
  • Year to date:
    • Site-wide: 66,077 out of 70,616
  • Since beginning of last month:
    • Site-wide: 66,646 out of 70,616

The Markov link method: a nonparametric approach to combine observations from multiple experiments

bioinformatics more details view paper
  • Downloaded 957 times
  • Download rankings, all-time:
    • Site-wide: 8,899 out of 70,616
    • In bioinformatics: 1,542 out of 6,917
  • Year to date:
    • Site-wide: 18,365 out of 70,616
  • Since beginning of last month:
    • Site-wide: 13,394 out of 70,616

Scalable variational inference for super resolution microscopy

bioinformatics more details view paper
  • Downloaded 897 times
  • Download rankings, all-time:
    • Site-wide: 9,868 out of 70,616
    • In bioinformatics: 1,682 out of 6,917
  • Year to date:
    • Site-wide: 47,158 out of 70,616
  • Since beginning of last month:
    • Site-wide: 65,994 out of 70,616

Scalable approximate Bayesian inference for particle tracking data

bioinformatics more details view paper
  • Downloaded 829 times
  • Download rankings, all-time:
    • Site-wide: 11,189 out of 70,616
    • In bioinformatics: 1,876 out of 6,917
  • Year to date:
    • Site-wide: 26,811 out of 70,616
  • Since beginning of last month:
    • Site-wide: 46,781 out of 70,616

A Statistical Model of Shared Variability in the Songbird Auditory System

neuroscience more details view paper
  • Downloaded 688 times
  • Download rankings, all-time:
    • Site-wide: 14,669 out of 70,616
    • In neuroscience: 2,429 out of 12,704
  • Year to date:
    • Site-wide: 62,186 out of 70,616
  • Since beginning of last month:
    • Site-wide: 51,809 out of 70,616

A zero-inflated gamma model for post-deconvolved calcium imaging traces

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  • Downloaded 470 times
  • Download rankings, all-time:
    • Site-wide: 24,436 out of 70,616
    • In neuroscience: 4,183 out of 12,704
  • Year to date:
    • Site-wide: 13,797 out of 70,616
  • Since beginning of last month:
    • Site-wide: 12,910 out of 70,616

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