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Author: Liam Paninski

  • Most recently observed institution: Columbia University

Rankings

  • All-time downloads: 47,397 (rank: 800 out of 396,022)
  • Categories:
    • bioinformatics: 2,985 (rank: 3,535 out of 33,607)
    • neuroscience: 44,412 (rank: 26 out of 66,142)

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Preprints

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

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Hierarchical recurrent state space models reveal discrete and continuous dynamics of neural activity in C. elegans

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NeuroPAL: A Neuronal Polychromatic Atlas of Landmarks for Whole-Brain Imaging in C. elegans

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Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

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Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

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YASS: Yet Another Spike Sorter

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OnACID: Online Analysis of Calcium Imaging Data in Real Time

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    • In neuroscience: 407 out of 16,513
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Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

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Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

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Complementary networks of cortical somatostatin interneurons enforce layer specific control

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    • In neuroscience: 766 out of 16,513
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The central amygdala controls learning in the lateral amygdala

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    • In neuroscience: 787 out of 16,513
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Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays

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Multi-scale approaches for high-speed imaging and analysis of large neural populations

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    • In neuroscience: 1,420 out of 16,513
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The Markov link method: a nonparametric approach to combine observations from multiple experiments

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    • In bioinformatics: 1,723 out of 8,685
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    • Site-wide: 31,567 out of 92,757

High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo

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    • In neuroscience: 1,643 out of 16,513
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    • Site-wide: 9,469 out of 92,757

Scalable variational inference for super resolution microscopy

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EASE: EM-Assisted Source Extraction from calcium imaging data

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    • In neuroscience: 2,036 out of 16,513
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Scalable approximate Bayesian inference for particle tracking data

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A Statistical Model of Shared Variability in the Songbird Auditory System

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    • In neuroscience: 3,123 out of 16,513
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A zero-inflated gamma model for post-deconvolved calcium imaging traces

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    • In neuroscience: 3,534 out of 16,513
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    • Site-wide: 15,268 out of 92,757

YASS: Yet Another Spike Sorter applied to large-scale multi-electrode array recordings in primate retina

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    • In neuroscience: 4,776 out of 16,513
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    • Site-wide: 4,538 out of 92,757

Neuroscience Cloud Analysis As a Service

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    • In neuroscience: 9,607 out of 16,513
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    • Site-wide: 3,751 out of 92,757

Extracting neural signals from semi-immobilized animals with deformable non-negative matrix factorization

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    • In neuroscience: 13,223 out of 16,513
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