Author: Liam Paninski
- ORCiD: http://orcid.org/0000-0002-0276-7032
- Most recently observed institution: Columbia University
Rankings
- All-time downloads: 88,771 (rank: 2,698 )
- Categories:
- animal behavior and cognition: 3,610 (rank: 278 (tie) )
- bioinformatics: 3,626 (rank: 5,798 (tie) )
- genomics: 910 (rank: 33,811 (tie) )
- neuroscience: 79,348 (rank: 26 )
Downloads per author, site-wide
Preprints
Bright and photostable chemigenetic indicators for extended in vivo voltage imaging
neuroscience more details view paper- Downloaded 12,525 times
- Download rankings, all-time:
- Site-wide: 1,044
- In neuroscience: 35
- Year to date:
- Site-wide: 5,463
- Since beginning of last month:
- Site-wide: 7,789
Hierarchical recurrent state space models reveal discrete and continuous dynamics of neural activity in C. elegans
neuroscience more details view paper- Downloaded 7,443 times
- Download rankings, all-time:
- Site-wide: 2,015
- In neuroscience: 93
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 6,002
NeuroPAL: A Neuronal Polychromatic Atlas of Landmarks for Whole-Brain Imaging in C. elegans
neuroscience more details view paper- Downloaded 6,830 times
- Download rankings, all-time:
- Site-wide: 2,290
- In neuroscience: 106
- Year to date:
- Site-wide: 61,715
- Since beginning of last month:
- Site-wide: 15,743
Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data
neuroscience more details view paper- Downloaded 4,391 times
- Download rankings, all-time:
- Site-wide: 4,184
- In neuroscience: 287
- Year to date:
- Site-wide: 26,193
- Since beginning of last month:
- Site-wide: 13,040
Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons
neuroscience more details view paper- Downloaded 3,951 times
- Download rankings, all-time:
- Site-wide: 4,892
- In neuroscience: 370
- Year to date:
- Site-wide: 20,359
- Since beginning of last month:
- Site-wide: 51,830
Multiscale and multimodal reconstruction of cortical structure and function
neuroscience more details view paper- Downloaded 3,460 times
- Download rankings, all-time:
- Site-wide: 5,930
- In neuroscience: 466
- Year to date:
- Site-wide: 19,540
- Since beginning of last month:
- Site-wide: 30,432
Reproducibility of in-vivo electrophysiological measurements in mice
neuroscience more details view paper- Downloaded 3,437 times
- Download rankings, all-time:
- Site-wide: 5,996
- In neuroscience: 518
- Year to date:
- Site-wide: 1,030
- Since beginning of last month:
- Site-wide: 1,601
YASS: Yet Another Spike Sorter
neuroscience more details view paper- Downloaded 3,121 times
- Download rankings, all-time:
- Site-wide: 6,911
- In neuroscience: 598
- Year to date:
- Site-wide: 165,572
- Since beginning of last month:
- Site-wide: 117,909
OnACID: Online Analysis of Calcium Imaging Data in Real Time
neuroscience more details view paper- Downloaded 2,875 times
- Download rankings, all-time:
- Site-wide: 7,747
- In neuroscience: 674
- Year to date:
- Site-wide: 133,211
- Since beginning of last month:
- Site-wide: 196,944
Deep Graph Pose: a semi-supervised deep graphical model for improved animal pose tracking
animal behavior and cognition more details view paper- Downloaded 2,674 times
- Download rankings, all-time:
- Site-wide: 8,649
- In animal behavior and cognition: 50
- Year to date:
- Site-wide: 28,995
- Since beginning of last month:
- Site-wide: 22,110
Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data
neuroscience more details view paper- Downloaded 2,405 times
- Download rankings, all-time:
- Site-wide: 10,160
- In neuroscience: 965
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 145,113
Flygenvectors: The spatial and temporal structure of neural activity across the fly brain
neuroscience more details view paper- Downloaded 2,346 times
- Download rankings, all-time:
- Site-wide: 10,568
- In neuroscience: 1,113
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 8,237
Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders
neuroscience more details view paper- Downloaded 2,254 times
- Download rankings, all-time:
- Site-wide: 11,219
- In neuroscience: 1,086
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 31,449
Community-based benchmarking improves spike rate inference from two-photon calcium imaging data
neuroscience more details view paper- Downloaded 2,214 times
- Download rankings, all-time:
- Site-wide: 11,519
- In neuroscience: 1,132
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 93,594
Recurrent Switching Dynamical Systems Models for Multiple Interacting Neural Populations
neuroscience more details view paper- Downloaded 2,182 times
- Download rankings, all-time:
- Site-wide: 11,786
- In neuroscience: 1,170
- Year to date:
- Site-wide: 66,919
- Since beginning of last month:
- Site-wide: 39,055
YASS: Yet Another Spike Sorter applied to large-scale multi-electrode array recordings in primate retina
neuroscience more details view paper- Downloaded 2,006 times
- Download rankings, all-time:
- Site-wide: 13,366
- In neuroscience: 1,379
- Year to date:
- Site-wide: 89,644
- Since beginning of last month:
- Site-wide: 14,945
EASE: EM-Assisted Source Extraction from calcium imaging data
neuroscience more details view paper- Downloaded 1,917 times
- Download rankings, all-time:
- Site-wide: 14,335
- In neuroscience: 1,503
- Year to date:
- Site-wide: 46,223
- Since beginning of last month:
- Site-wide: 38,817
Complementary networks of cortical somatostatin interneurons enforce layer specific control
neuroscience more details view paper- Downloaded 1,908 times
- Download rankings, all-time:
- Site-wide: 14,434
- In neuroscience: 1,520
- Year to date:
- Site-wide: 136,465
- Since beginning of last month:
- Site-wide: 20,097
Neuroscience Cloud Analysis As a Service
neuroscience more details view paper- Downloaded 1,892 times
- Download rankings, all-time:
- Site-wide: 14,609
- In neuroscience: 1,552
- Year to date:
- Site-wide: 24,070
- Since beginning of last month:
- Site-wide: 18,664
The central amygdala controls learning in the lateral amygdala
neuroscience more details view paper- Downloaded 1,821 times
- Download rankings, all-time:
- Site-wide: 15,542
- In neuroscience: 1,635
- Year to date:
- Site-wide: 189,606
- Since beginning of last month:
- Site-wide: 208,778
High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo
neuroscience more details view paper- Downloaded 1,630 times
- Download rankings, all-time:
- Site-wide: 18,448
- In neuroscience: 2,059
- Year to date:
- Site-wide: 64,893
- Since beginning of last month:
- Site-wide: 187,635
Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays
neuroscience more details view paper- Downloaded 1,558 times
- Download rankings, all-time:
- Site-wide: 19,809
- In neuroscience: 2,242
- Year to date:
- Site-wide: 190,532
- Since beginning of last month:
- Site-wide: 148,934
The Markov link method: a nonparametric approach to combine observations from multiple experiments
bioinformatics more details view paper- Downloaded 1,392 times
- Download rankings, all-time:
- Site-wide: 23,776
- In bioinformatics: 2,614
- Year to date:
- Site-wide: 114,829
- Since beginning of last month:
- Site-wide: 59,654
A zero-inflated gamma model for post-deconvolved calcium imaging traces
neuroscience more details view paper- Downloaded 1,342 times
- Download rankings, all-time:
- Site-wide: 25,182
- In neuroscience: 3,040
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 59,691
Multi-scale approaches for high-speed imaging and analysis of large neural populations
neuroscience more details view paper- Downloaded 1,322 times
- Download rankings, all-time:
- Site-wide: 25,809
- In neuroscience: 3,074
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 176,285
Scalable variational inference for super resolution microscopy
bioinformatics more details view paper- Downloaded 1,139 times
- Download rankings, all-time:
- Site-wide: 32,653
- In bioinformatics: 3,438
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 174,237
Scalable approximate Bayesian inference for particle tracking data
bioinformatics more details view paper- Downloaded 1,114 times
- Download rankings, all-time:
- Site-wide: 33,780
- In bioinformatics: 3,565
- Year to date:
- Site-wide: 165,675
- Since beginning of last month:
- Site-wide: 173,974
Rapid learning of neural circuitry from holographic ensemble stimulation enabled by model-based compressed sensing
neuroscience more details view paper- Downloaded 1,052 times
- Download rankings, all-time:
- Site-wide: 36,840
- In neuroscience: 5,571
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 4,539
Semi-supervised sequence modeling for improved behavioral segmentation
animal behavior and cognition more details view paper- Downloaded 992 times
- Download rankings, all-time:
- Site-wide: 40,401
- In animal behavior and cognition: 338
- Year to date:
- Site-wide: 8,217
- Since beginning of last month:
- Site-wide: 13,229
Extracting neural signals from semi-immobilized animals with deformable non-negative matrix factorization
neuroscience more details view paper- Downloaded 943 times
- Download rankings, all-time:
- Site-wide: 43,638
- In neuroscience: 5,779
- Year to date:
- Site-wide: 185,370
- Since beginning of last month:
- Site-wide: 34,352
A Statistical Model of Shared Variability in the Songbird Auditory System
neuroscience more details view paper- Downloaded 920 times
- Download rankings, all-time:
- Site-wide: 45,305
- In neuroscience: 5,930
- Year to date:
- Site-wide: 97,548
- Since beginning of last month:
- Site-wide: 196,611
BARcode DEmixing through Non-negative Spatial Regression (BarDensr)
genomics more details view paper- Downloaded 912 times
- Download rankings, all-time:
- Site-wide: 45,948
- In genomics: 3,452
- Year to date:
- Site-wide: 156,846
- Since beginning of last month:
- Site-wide: 79,224
Nonlinear decoding of natural images from large-scale primate retinal ganglion recordings
neuroscience more details view paper- Downloaded 827 times
- Download rankings, all-time:
- Site-wide: 53,387
- In neuroscience: 7,321
- Year to date:
- Site-wide: 81,938
- Since beginning of last month:
- Site-wide: 52,770
Visualizing the organization and differentiation of the male-specific nervous system of C. elegans
neuroscience more details view paper- Downloaded 584 times
- Download rankings, all-time:
- Site-wide: 86,654
- In neuroscience: 12,539
- Year to date:
- Site-wide: 74,586
- Since beginning of last month:
- Site-wide: 61,702
Three-dimensional spike localization and improved motion correction for Neuropixels recordings
neuroscience more details view paper- Downloaded 579 times
- Download rankings, all-time:
- Site-wide: 87,537
- In neuroscience: 13,024
- Year to date:
- Site-wide: 9,953
- Since beginning of last month:
- Site-wide: 63,478
Versatile Multiple Object Tracking in Sparse 2D/3D Videos Via Diffeomorphic Image Registration
neuroscience more details view paper- Downloaded 362 times
- Download rankings, all-time:
- Site-wide: 141,232
- In neuroscience: 23,856
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 12,867
Improved blind demixing methods for recovering dense neuronal morphology from barcode imaging data
neuroscience more details view paper- Downloaded 331 times
- Download rankings, all-time:
- Site-wide: 150,604
- In neuroscience: 22,238
- Year to date:
- Site-wide: 59,223
- Since beginning of last month:
- Site-wide: 113,171
Robust online multiband drift estimation in electrophysiology data
neuroscience more details view paper- Downloaded 120 times
- Download rankings, all-time:
- Site-wide: 203,946
- In neuroscience: None
- Year to date:
- Site-wide: 51,784
- Since beginning of last month:
- Site-wide: 1,913
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News
- 27 Nov 2020: The website and API now include results pulled from medRxiv as well as bioRxiv.
- 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
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