Author: Liam Paninski

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Preprints

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

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  • Site-wide: 722
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  • Site-wide: 11,919
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  • Site-wide: 19,946

NeuroPAL: A Neuronal Polychromatic Atlas of Landmarks for Whole-Brain Imaging in C. elegans

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  • Site-wide: 1,676
  • In neuroscience: 83
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  • Site-wide: 13,402

Hierarchical recurrent state space models reveal discrete and continuous dynamics of neural activity in C. elegans

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  • Site-wide: 1,874
  • In neuroscience: 101
• Year to date:
  • Site-wide: 5,276
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Penalized matrix decomposition for denoising, compression, and improved demixing of functional imaging data

• Downloaded 3,558 times
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  • Site-wide: 3,383
  • In neuroscience: 263
• Year to date:
  • Site-wide: 12,605
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  • Site-wide: 21,609

Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons

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  • Site-wide: 3,612
  • In neuroscience: 291
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  • Site-wide: 19,276
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YASS: Yet Another Spike Sorter

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  • Site-wide: 4,607
  • In neuroscience: 408
• Year to date:
  • Site-wide: 32,658
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  • Site-wide: 43,365

OnACID: Online Analysis of Calcium Imaging Data in Real Time

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  • Site-wide: 5,568
  • In neuroscience: 517
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  • Site-wide: 40,032
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Multiscale and multimodal reconstruction of cortical structure and function

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  • Site-wide: 6,092
  • In neuroscience: 570
• Year to date:
  • Site-wide: 3,793
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  • Site-wide: 4,710

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

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  • Site-wide: 6,685
  • In neuroscience: 651
• Year to date:
  • Site-wide: 71,773
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  • Site-wide: 119,196

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

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  • Site-wide: 7,970
  • In neuroscience: 811
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  • Site-wide: 45,059
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  • Site-wide: 76,654

Deep Graph Pose: a semi-supervised deep graphical model for improved animal pose tracking

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  • Site-wide: 9,521
  • In animal behavior and cognition: 67
• Year to date:
  • Site-wide: 2,834
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  • Site-wide: 2,851

Complementary networks of cortical somatostatin interneurons enforce layer specific control

• Downloaded 1,737 times
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  • Site-wide: 9,634
  • In neuroscience: 1,017
• Year to date:
  • Site-wide: 109,491
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  • Site-wide: 106,313

The central amygdala controls learning in the lateral amygdala

• Downloaded 1,685 times
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  • Site-wide: 10,065
  • In neuroscience: 1,070
• Year to date:
  • Site-wide: 96,274
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  • Site-wide: 104,638

High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo

• Downloaded 1,454 times
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  • Site-wide: 12,464
  • In neuroscience: 1,407
• Year to date:
  • Site-wide: 21,028
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  • Site-wide: 18,699

Electrical Stimulus Artifact Cancellation and Neural Spike Detection on Large Multi-Electrode Arrays

• Downloaded 1,436 times
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  • Site-wide: 12,720
  • In neuroscience: 1,444
• Year to date:
  • Site-wide: 90,443
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  • Site-wide: 127,111

EASE: EM-Assisted Source Extraction from calcium imaging data

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  • Site-wide: 14,291
  • In neuroscience: 1,664
• Year to date:
  • Site-wide: 24,558
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  • Site-wide: 29,688

Multi-scale approaches for high-speed imaging and analysis of large neural populations

• Downloaded 1,239 times
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  • Site-wide: 15,921
  • In neuroscience: 1,929
• Year to date:
  • Site-wide: 92,712
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  • Site-wide: 93,770

The Markov link method: a nonparametric approach to combine observations from multiple experiments

• Downloaded 1,174 times
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  • Site-wide: 17,248
  • In bioinformatics: 2,055
• Year to date:
  • Site-wide: 80,064
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  • Site-wide: 121,232

YASS: Yet Another Spike Sorter applied to large-scale multi-electrode array recordings in primate retina

• Downloaded 1,103 times
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  • Site-wide: 18,884
  • In neuroscience: 2,350
• Year to date:
  • Site-wide: 10,640
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  • Site-wide: 20,205

Recurrent Switching Dynamical Systems Models for Multiple Interacting Neural Populations

• Downloaded 1,100 times
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  • Site-wide: 18,967
  • In neuroscience: 2,362
• Year to date:
  • Site-wide: 4,068
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  • Site-wide: 9,708

Scalable variational inference for super resolution microscopy

• Downloaded 1,012 times
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  • Site-wide: 21,442
  • In bioinformatics: 2,525
• Year to date:
  • Site-wide: 129,287
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  • Site-wide: 118,689

A zero-inflated gamma model for post-deconvolved calcium imaging traces

• Downloaded 1,007 times
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  • Site-wide: 21,585
  • In neuroscience: 2,746
• Year to date:
  • Site-wide: 26,904
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  • Site-wide: 22,423

Scalable approximate Bayesian inference for particle tracking data

• Downloaded 984 times
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  • Site-wide: 22,306
  • In bioinformatics: 2,614
• Year to date:
  • Site-wide: 111,157
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  • Site-wide: 108,098

Neuroscience Cloud Analysis As a Service

• Downloaded 795 times
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  • Site-wide: 30,233
  • In neuroscience: 4,052
• Year to date:
  • Site-wide: 13,721
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  • Site-wide: 14,031

A Statistical Model of Shared Variability in the Songbird Auditory System

• Downloaded 792 times
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  • Site-wide: 30,407
  • In neuroscience: 4,072
• Year to date:
  • Site-wide: 126,423
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  • Site-wide: 87,192

Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders

• Downloaded 588 times
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  • Site-wide: 45,085
  • In neuroscience: 6,476
• Year to date:
  • Site-wide: 3,350
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  • Site-wide: None

Extracting neural signals from semi-immobilized animals with deformable non-negative matrix factorization

• Downloaded 515 times
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  • Site-wide: 52,931
  • In neuroscience: 7,780
• Year to date:
  • Site-wide: 30,607
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  • Site-wide: 41,096

Nonlinear decoding of natural images from large-scale primate retinal ganglion recordings

• Downloaded 480 times
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  • Site-wide: 57,437
  • In neuroscience: 8,497
• Year to date:
  • Site-wide: 21,519
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  • Site-wide: 24,963

BARcode DEmixing through Non-negative Spatial Regression (BarDensr)

• Downloaded 463 times
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  • Site-wide: 59,594
  • In genomics: 4,393
• Year to date:
  • Site-wide: 33,191
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  • Site-wide: 47,786

Visualizing the organization and differentiation of the male-specific nervous system of C. elegans

• Downloaded 182 times
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  • Site-wide: 114,723
  • In neuroscience: 17,691
• Year to date:
  • Site-wide: 17,493
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  • Site-wide: 3,224