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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,519 bioRxiv papers from 243,473 authors.

Author: Kathryn Holt

Rankings

  • All-time downloads: 13,675 (rank: 1,936 out of 243,473)
  • Categories:
    • bioinformatics: 11,167 (rank: 194 (tie) out of 21,552)
    • genomics: 499 (rank: 17,773 (tie) out of 28,107)
    • microbiology: 1,779 (rank: 902 out of 23,581)
    • molecular biology: 230 (rank: 6,313 (tie) out of 10,300)

Downloads per author, site-wide

Preprints

Performance of neural network basecalling tools for Oxford Nanopore sequencing

bioinformatics more details view paper
  • Downloaded 4,892 times
  • Download rankings, all-time:
    • Site-wide: 345 out of 52,519
    • In bioinformatics: 70 out of 5,498
  • Year to date:
    • Site-wide: 34 out of 52,519
  • Since beginning of last month:
    • Site-wide: 23 out of 52,519

Completing bacterial genome assemblies with multiplex MinION sequencing

bioinformatics more details view paper
  • Downloaded 3,135 times
  • Download rankings, all-time:
    • Site-wide: 828 out of 52,519
    • In bioinformatics: 168 out of 5,498
  • Year to date:
    • Site-wide: 8,867 out of 52,519
  • Since beginning of last month:
    • Site-wide: 10,675 out of 52,519

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

bioinformatics more details view paper
  • Downloaded 1,745 times
  • Download rankings, all-time:
    • Site-wide: 2,317 out of 52,519
    • In bioinformatics: 482 out of 5,498
  • Year to date:
    • Site-wide: 1,923 out of 52,519
  • Since beginning of last month:
    • Site-wide: 3,622 out of 52,519

Unicycler: resolving bacterial genome assemblies from short and long sequencing reads

bioinformatics more details view paper
  • Downloaded 1,395 times
  • Download rankings, all-time:
    • Site-wide: 3,364 out of 52,519
    • In bioinformatics: 675 out of 5,498
  • Year to date:
    • Site-wide: 18,165 out of 52,519
  • Since beginning of last month:
    • Site-wide: 13,458 out of 52,519

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

microbiology more details view paper
  • Downloaded 604 times
  • Download rankings, all-time:
    • Site-wide: 12,091 out of 52,519
    • In microbiology: 569 out of 4,108
  • Year to date:
    • Site-wide: 6,307 out of 52,519
  • Since beginning of last month:
    • Site-wide: 20,471 out of 52,519

Whole genome sequence analysis of Salmonella Typhi isolated in Thailand before and after the introduction of a national immunization program

genomics more details view paper
  • Downloaded 499 times
  • Download rankings, all-time:
    • Site-wide: 15,466 out of 52,519
    • In genomics: 1,961 out of 3,756
  • Year to date:
    • Site-wide: 25,510 out of 52,519
  • Since beginning of last month:
    • Site-wide: 17,623 out of 52,519

Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.

microbiology more details view paper
  • Downloaded 384 times
  • Download rankings, all-time:
    • Site-wide: 20,744 out of 52,519
    • In microbiology: 1,122 out of 4,108
  • Year to date:
    • Site-wide: 3,484 out of 52,519
  • Since beginning of last month:
    • Site-wide: 7,120 out of 52,519

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

microbiology more details view paper
  • Downloaded 378 times
  • Download rankings, all-time:
    • Site-wide: 21,093 out of 52,519
    • In microbiology: 1,145 out of 4,108
  • Year to date:
    • Site-wide: 29,995 out of 52,519
  • Since beginning of last month:
    • Site-wide: 25,211 out of 52,519

Kaptive Web: user-friendly capsule and lipopolysaccharide serotype prediction for Klebsiella genomes

microbiology more details view paper
  • Downloaded 309 times
  • Download rankings, all-time:
    • Site-wide: 25,523 out of 52,519
    • In microbiology: 1,484 out of 4,108
  • Year to date:
    • Site-wide: 23,580 out of 52,519
  • Since beginning of last month:
    • Site-wide: 32,850 out of 52,519

Laboratory and Molecular Surveillance of Paediatric Typhoidal Salmonella in Nepal: Antimicrobial Resistance and Implications for Vaccine Policy

molecular biology more details view paper
  • Downloaded 230 times
  • Download rankings, all-time:
    • Site-wide: 32,426 out of 52,519
    • In molecular biology: 894 out of 1,586
  • Year to date:
    • Site-wide: 47,399 out of 52,519
  • Since beginning of last month:
    • Site-wide: 47,453 out of 52,519

Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clone 1 and 2

microbiology more details view paper
  • Downloaded 104 times
  • Download rankings, all-time:
    • Site-wide: 46,605 out of 52,519
    • In microbiology: 3,405 out of 4,108
  • Year to date:
    • Site-wide: 21,025 out of 52,519
  • Since beginning of last month:
    • Site-wide: 3,868 out of 52,519

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