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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 59,664 bioRxiv papers from 265,313 authors.

Author: Kathryn Holt

Rankings

  • All-time downloads: 16,964 (rank: 1,559 out of 265,577)
  • Categories:
    • bioinformatics: 13,946 (rank: 140 out of 23,687)
    • evolutionary biology: 146 (rank: 13,134 (tie) out of 14,654)
    • genomics: 555 (rank: 18,437 (tie) out of 31,037)
    • microbiology: 2,317 (rank: 731 out of 27,144)

Downloads per author, site-wide

Preprints

Performance of neural network basecalling tools for Oxford Nanopore sequencing

bioinformatics more details view paper
  • Downloaded 6,692 times
  • Download rankings, all-time:
    • Site-wide: 222 out of 59,744
    • In bioinformatics: 38 out of 6,035
  • Year to date:
    • Site-wide: 36 out of 59,744
  • Since beginning of last month:
    • Site-wide: 122 out of 59,744

Completing bacterial genome assemblies with multiplex MinION sequencing

bioinformatics more details view paper
  • Downloaded 3,191 times
  • Download rankings, all-time:
    • Site-wide: 913 out of 59,744
    • In bioinformatics: 184 out of 6,035
  • Year to date:
    • Site-wide: 11,450 out of 59,744
  • Since beginning of last month:
    • Site-wide: 26,949 out of 59,744

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

bioinformatics more details view paper
  • Downloaded 1,968 times
  • Download rankings, all-time:
    • Site-wide: 2,191 out of 59,744
    • In bioinformatics: 454 out of 6,035
  • Year to date:
    • Site-wide: 1,962 out of 59,744
  • Since beginning of last month:
    • Site-wide: 4,314 out of 59,744

Unicycler: resolving bacterial genome assemblies from short and long sequencing reads

bioinformatics more details view paper
  • Downloaded 1,493 times
  • Download rankings, all-time:
    • Site-wide: 3,483 out of 59,744
    • In bioinformatics: 701 out of 6,035
  • Year to date:
    • Site-wide: 15,378 out of 59,744
  • Since beginning of last month:
    • Site-wide: 7,060 out of 59,744

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

microbiology more details view paper
  • Downloaded 633 times
  • Download rankings, all-time:
    • Site-wide: 13,350 out of 59,744
    • In microbiology: 656 out of 4,768
  • Year to date:
    • Site-wide: 9,938 out of 59,744
  • Since beginning of last month:
    • Site-wide: 38,250 out of 59,744

Correcting index databases improves metagenomic studies

bioinformatics more details view paper
  • Downloaded 602 times
  • Download rankings, all-time:
    • Site-wide: 14,263 out of 59,744
    • In bioinformatics: 2,287 out of 6,035
  • Year to date:
    • Site-wide: 3,034 out of 59,744
  • Since beginning of last month:
    • Site-wide: 800 out of 59,744

Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.

microbiology more details view paper
  • Downloaded 566 times
  • Download rankings, all-time:
    • Site-wide: 15,554 out of 59,744
    • In microbiology: 782 out of 4,768
  • Year to date:
    • Site-wide: 3,357 out of 59,744
  • Since beginning of last month:
    • Site-wide: 5,833 out of 59,744

Whole genome sequence analysis of Salmonella Typhi isolated in Thailand before and after the introduction of a national immunization program

genomics more details view paper
  • Downloaded 555 times
  • Download rankings, all-time:
    • Site-wide: 15,954 out of 59,744
    • In genomics: 2,031 out of 4,155
  • Year to date:
    • Site-wide: 25,842 out of 59,744
  • Since beginning of last month:
    • Site-wide: 31,268 out of 59,744

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

microbiology more details view paper
  • Downloaded 442 times
  • Download rankings, all-time:
    • Site-wide: 21,085 out of 59,744
    • In microbiology: 1,138 out of 4,768
  • Year to date:
    • Site-wide: 27,595 out of 59,744
  • Since beginning of last month:
    • Site-wide: 33,874 out of 59,744

Kaptive Web: user-friendly capsule and lipopolysaccharide serotype prediction for Klebsiella genomes

microbiology more details view paper
  • Downloaded 341 times
  • Download rankings, all-time:
    • Site-wide: 27,689 out of 59,744
    • In microbiology: 1,650 out of 4,768
  • Year to date:
    • Site-wide: 29,396 out of 59,744
  • Since beginning of last month:
    • Site-wide: 22,358 out of 59,744

Impact of insertion sequences on convergent evolution of Shigella species

microbiology more details view paper
  • Downloaded 174 times
  • Download rankings, all-time:
    • Site-wide: 44,911 out of 59,744
    • In microbiology: 3,173 out of 4,768
  • Year to date:
    • Site-wide: 20,364 out of 59,744
  • Since beginning of last month:
    • Site-wide: 25,018 out of 59,744

Insights from the revised complete genome sequences of Acinetobacter baumannii strains AB307-0294 and ACICU belonging to global clone 1 and 2

microbiology more details view paper
  • Downloaded 161 times
  • Download rankings, all-time:
    • Site-wide: 46,609 out of 59,744
    • In microbiology: 3,336 out of 4,768
  • Year to date:
    • Site-wide: 22,268 out of 59,744
  • Since beginning of last month:
    • Site-wide: 21,135 out of 59,744

Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales

evolutionary biology more details view paper
  • Downloaded 146 times
  • Download rankings, all-time:
    • Site-wide: 48,558 out of 59,744
    • In evolutionary biology: 3,519 out of 4,076
  • Year to date:
    • Site-wide: 25,033 out of 59,744
  • Since beginning of last month:
    • Site-wide: 12,071 out of 59,744

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