Rxivist logo

Author: Marnix H Medema

Rankings

  • All-time downloads: 21,442 (rank: 9,340 (tie) )
  • Categories:
    • biochemistry: 1,738 (rank: 2,786 (tie) )
    • bioinformatics: 12,923 (rank: 577 )
    • genomics: 12 (rank: 53,589 (tie) )
    • microbiology: 4,587 (rank: 3,543 )
    • plant biology: 737 (rank: 6,404 (tie) )
    • synthetic biology: 1,445 (rank: 1,303 (tie) )

Downloads per author, site-wide

Preprints

A computational framework for systematic exploration of biosynthetic diversity from large-scale genomic data

bioinformatics more details view paper
  • Downloaded 4,012 times
  • Download rankings, all-time:
    • Site-wide: 3,226
    • In bioinformatics: 287
  • Year to date:
    • Site-wide: 8,885
  • Since beginning of last month:
    • Site-wide: 27,075

A systematic analysis of metabolic pathways in the human gut microbiota

bioinformatics more details view paper
  • Downloaded 2,748 times
  • Download rankings, all-time:
    • Site-wide: 5,472
    • In bioinformatics: 555
  • Year to date:
    • Site-wide: 808
  • Since beginning of last month:
    • Site-wide: 658

A metabolic pathway for bile acid dehydroxylation by the gut microbiome

microbiology more details view paper
  • Downloaded 1,486 times
  • Download rankings, all-time:
    • Site-wide: 13,528
    • In microbiology: 796
  • Year to date:
    • Site-wide: 19,844
  • Since beginning of last month:
    • Site-wide: 30,764

HEx: a heterologous expression platform for the discovery of fungal natural products

synthetic biology more details view paper
  • Downloaded 1,445 times
  • Download rankings, all-time:
    • Site-wide: 14,146
    • In synthetic biology: 159
  • Year to date:
    • Site-wide: 68,186
  • Since beginning of last month:
    • Site-wide: 82,310

BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters

bioinformatics more details view paper
  • Downloaded 1,366 times
  • Download rankings, all-time:
    • Site-wide: 15,394
    • In bioinformatics: 1,806
  • Year to date:
    • Site-wide: 11,984
  • Since beginning of last month:
    • Site-wide: 58,718

plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters

bioinformatics more details view paper
  • Downloaded 1,280 times
  • Download rankings, all-time:
    • Site-wide: 17,009
    • In bioinformatics: 1,982
  • Year to date:
    • Site-wide: 115,754
  • Since beginning of last month:
    • Site-wide: 69,675

Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing

microbiology more details view paper
  • Downloaded 1,245 times
  • Download rankings, all-time:
    • Site-wide: 17,672
    • In microbiology: 1,029
  • Year to date:
    • Site-wide: 2,298
  • Since beginning of last month:
    • Site-wide: 364

MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools

biochemistry more details view paper
  • Downloaded 1,117 times
  • Download rankings, all-time:
    • Site-wide: 20,771
    • In biochemistry: 432
  • Year to date:
    • Site-wide: 64,489
  • Since beginning of last month:
    • Site-wide: 88,822

BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes

bioinformatics more details view paper
  • Downloaded 1,090 times
  • Download rankings, all-time:
    • Site-wide: 21,535
    • In bioinformatics: 2,481
  • Year to date:
    • Site-wide: 5,446
  • Since beginning of last month:
    • Site-wide: 5,895

RRE-Finder: A Genome-Mining Tool for Class-Independent RiPP Discovery

bioinformatics more details view paper
  • Downloaded 845 times
  • Download rankings, all-time:
    • Site-wide: 31,040
    • In bioinformatics: 3,478
  • Year to date:
    • Site-wide: 34,200
  • Since beginning of last month:
    • Site-wide: 3,130

Integration of machine learning and pan-genomics expands the biosynthetic landscape of RiPP natural products

microbiology more details view paper
  • Downloaded 789 times
  • Download rankings, all-time:
    • Site-wide: 34,190
    • In microbiology: 2,062
  • Year to date:
    • Site-wide: 45,289
  • Since beginning of last month:
    • Site-wide: 102,213

cblaster: a remote search tool for rapid identification and visualisation of homologous gene clusters

bioinformatics more details view paper
  • Downloaded 765 times
  • Download rankings, all-time:
    • Site-wide: 35,700
    • In bioinformatics: 3,910
  • Year to date:
    • Site-wide: 6,698
  • Since beginning of last month:
    • Site-wide: 107,701

Comprehensive mass spectrometry-guided plant specialized metabolite phenotyping reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae

plant biology more details view paper
  • Downloaded 737 times
  • Download rankings, all-time:
    • Site-wide: 37,532
    • In plant biology: 750
  • Year to date:
    • Site-wide: 104,255
  • Since beginning of last month:
    • Site-wide: 84,754

Global analysis of adenylate-forming enzymes reveals β-lactone biosynthesis pathway in pathogenic Nocardia

biochemistry more details view paper
  • Downloaded 621 times
  • Download rankings, all-time:
    • Site-wide: 47,032
    • In biochemistry: 1,183
  • Year to date:
    • Site-wide: 68,399
  • Since beginning of last month:
    • Site-wide: 95,065

Extracting the GEMs: Genotype, Environment and Microbiome interactions shaping host phenotypes

microbiology more details view paper
  • Downloaded 565 times
  • Download rankings, all-time:
    • Site-wide: 52,949
    • In microbiology: 3,351
  • Year to date:
    • Site-wide: 83,415
  • Since beginning of last month:
    • Site-wide: None

Coevolution-based prediction of protein-protein interactions in polyketide biosynthetic assembly lines

bioinformatics more details view paper
  • Downloaded 451 times
  • Download rankings, all-time:
    • Site-wide: 68,456
    • In bioinformatics: 6,564
  • Year to date:
    • Site-wide: 76,739
  • Since beginning of last month:
    • Site-wide: 13,976

Computational genomic discovery of diverse gene clusters harboring Fe-S flavoenzymes in anaerobic gut microbiota

bioinformatics more details view paper
  • Downloaded 366 times
  • Download rankings, all-time:
    • Site-wide: 83,489
    • In bioinformatics: 7,570
  • Year to date:
    • Site-wide: 125,920
  • Since beginning of last month:
    • Site-wide: 98,820

A biaryl-linked tripeptide from Planomonospora leads to widespread class of minimal RiPP gene clusters

microbiology more details view paper
  • Downloaded 339 times
  • Download rankings, all-time:
    • Site-wide: 89,079
    • In microbiology: 6,247
  • Year to date:
    • Site-wide: 62,966
  • Since beginning of last month:
    • Site-wide: 55,345

Do size and shape matter? Exploring the interactions and the metabolome of the soil isolate Hylemonella gracilis

microbiology more details view paper
  • Downloaded 163 times
  • Download rankings, all-time:
    • Site-wide: 130,876
    • In microbiology: 9,886
  • Year to date:
    • Site-wide: 38,513
  • Since beginning of last month:
    • Site-wide: None

A global survey of specialized metabolic diversity encoded in bacterial genomes

genomics more details view paper
  • Downloaded 12 times
  • Download rankings, all-time:
    • Site-wide: 152,423
    • In genomics: 7,611
  • Year to date:
    • Site-wide: 152,032
  • Since beginning of last month:
    • Site-wide: 7,278

PanLingua

News