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Author: Adam M. Phillippy

  • ORCiD: http://orcid.org/0000-0003-2983-8934
  • Most recently observed institution: Genome Informatics Section, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA

Rankings

  • All-time downloads: 117,163 (rank: 1,185 )
  • Categories:
    • bioinformatics: 46,816 (rank: 70 )
    • genomics: 70,347 (rank: 137 )

Downloads per author, site-wide

Preprints

The complete sequence of a human genome

genomics more details view paper
  • Downloaded 41,986 times
  • Download rankings, all-time:
    • Site-wide: 187
    • In genomics: 6
  • Year to date:
    • Site-wide: 56
  • Since beginning of last month:
    • Site-wide: 100

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

bioinformatics more details view paper
  • Downloaded 8,628 times
  • Download rankings, all-time:
    • Site-wide: 1,307
    • In bioinformatics: 70
  • Year to date:
    • Site-wide: 26,994
  • Since beginning of last month:
    • Site-wide: 49,903

Mash: fast genome and metagenome distance estimation using MinHash

bioinformatics more details view paper
  • Downloaded 6,820 times
  • Download rankings, all-time:
    • Site-wide: 1,747
    • In bioinformatics: 103
  • Year to date:
    • Site-wide: 50,763
  • Since beginning of last month:
    • Site-wide: 74,922

Telomere-to-telomere assembly of a complete human X chromosome

bioinformatics more details view paper
  • Downloaded 6,707 times
  • Download rankings, all-time:
    • Site-wide: 1,788
    • In bioinformatics: 108
  • Year to date:
    • Site-wide: 14,721
  • Since beginning of last month:
    • Site-wide: 97,320

Towards complete and error-free genome assemblies of all vertebrate species

genomics more details view paper
  • Downloaded 5,984 times
  • Download rankings, all-time:
    • Site-wide: 2,091
    • In genomics: 169
  • Year to date:
    • Site-wide: 2,229
  • Since beginning of last month:
    • Site-wide: 22,078

A fast approximate algorithm for mapping long reads to large reference databases

bioinformatics more details view paper
  • Downloaded 4,762 times
  • Download rankings, all-time:
    • Site-wide: 2,861
    • In bioinformatics: 222
  • Year to date:
    • Site-wide: 22,861
  • Since beginning of last month:
    • Site-wide: 34,576

Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control

genomics more details view paper
  • Downloaded 3,734 times
  • Download rankings, all-time:
    • Site-wide: 4,011
    • In genomics: 398
  • Year to date:
    • Site-wide: 64,000
  • Since beginning of last month:
    • Site-wide: 102,925

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

bioinformatics more details view paper
  • Downloaded 3,686 times
  • Download rankings, all-time:
    • Site-wide: 4,081
    • In bioinformatics: 373
  • Year to date:
    • Site-wide: 9,077
  • Since beginning of last month:
    • Site-wide: 19,754

High-throughput ANI Analysis of 90K Prokaryotic Genomes Reveals Clear Species Boundaries

bioinformatics more details view paper
  • Downloaded 3,569 times
  • Download rankings, all-time:
    • Site-wide: 4,270
    • In bioinformatics: 399
  • Year to date:
    • Site-wide: 36,516
  • Since beginning of last month:
    • Site-wide: 116,697

A complete reference genome improves analysis of human genetic variation

genomics more details view paper
  • Downloaded 3,494 times
  • Download rankings, all-time:
    • Site-wide: 4,393
    • In genomics: 434
  • Year to date:
    • Site-wide: 947
  • Since beginning of last month:
    • Site-wide: 701

Epigenetic Patterns in a Complete Human Genome

genomics more details view paper
  • Downloaded 3,398 times
  • Download rankings, all-time:
    • Site-wide: 4,589
    • In genomics: 455
  • Year to date:
    • Site-wide: 978
  • Since beginning of last month:
    • Site-wide: 1,359

A Fast Adaptive Algorithm for Computing Whole-Genome Homology Maps

bioinformatics more details view paper
  • Downloaded 2,294 times
  • Download rankings, all-time:
    • Site-wide: 8,160
    • In bioinformatics: 902
  • Year to date:
    • Site-wide: 78,516
  • Since beginning of last month:
    • Site-wide: 131,651

Segmental duplications and their variation in a complete human genome

genomics more details view paper
  • Downloaded 2,071 times
  • Download rankings, all-time:
    • Site-wide: 9,454
    • In genomics: 939
  • Year to date:
    • Site-wide: 1,884
  • Since beginning of last month:
    • Site-wide: 1,254

Automated ensemble assembly and validation of microbial genomes

bioinformatics more details view paper
  • Downloaded 2,065 times
  • Download rankings, all-time:
    • Site-wide: 9,493
    • In bioinformatics: 1,058
  • Year to date:
    • Site-wide: 153,897
  • Since beginning of last month:
    • Site-wide: 162,952

The whale shark genome reveals patterns of vertebrate gene family evolution

genomics more details view paper
  • Downloaded 2,029 times
  • Download rankings, all-time:
    • Site-wide: 9,748
    • In genomics: 960
  • Year to date:
    • Site-wide: 12,803
  • Since beginning of last month:
    • Site-wide: 31,894

Complete genomic and epigenetic maps of human centromeres

genomics more details view paper
  • Downloaded 1,896 times
  • Download rankings, all-time:
    • Site-wide: 10,827
    • In genomics: 1,062
  • Year to date:
    • Site-wide: 2,129
  • Since beginning of last month:
    • Site-wide: 1,552

From telomere to telomere: the transcriptional and epigenetic state of human repeat elements

genomics more details view paper
  • Downloaded 1,839 times
  • Download rankings, all-time:
    • Site-wide: 11,322
    • In genomics: 1,120
  • Year to date:
    • Site-wide: 2,209
  • Since beginning of last month:
    • Site-wide: 2,030

Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies

bioinformatics more details view paper
  • Downloaded 1,759 times
  • Download rankings, all-time:
    • Site-wide: 12,085
    • In bioinformatics: 1,345
  • Year to date:
    • Site-wide: 21,094
  • Since beginning of last month:
    • Site-wide: 80,492

Mash Screen: High-throughput sequence containment estimation for genome discovery

bioinformatics more details view paper
  • Downloaded 1,728 times
  • Download rankings, all-time:
    • Site-wide: 12,419
    • In bioinformatics: 1,386
  • Year to date:
    • Site-wide: 141,058
  • Since beginning of last month:
    • Site-wide: 149,764

MetaMaps - Strain-level metagenomic assignment and compositional estimation for long reads

bioinformatics more details view paper
  • Downloaded 1,728 times
  • Download rankings, all-time:
    • Site-wide: 12,418
    • In bioinformatics: 1,387
  • Year to date:
    • Site-wide: 102,327
  • Since beginning of last month:
    • Site-wide: 131,761

RefSeq database growth influences the accuracy of k-mer-based species identification

bioinformatics more details view paper
  • Downloaded 1,547 times
  • Download rankings, all-time:
    • Site-wide: 14,656
    • In bioinformatics: 1,649
  • Year to date:
    • Site-wide: 129,511
  • Since beginning of last month:
    • Site-wide: 137,695

Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies

genomics more details view paper
  • Downloaded 1,287 times
  • Download rankings, all-time:
    • Site-wide: 19,468
    • In genomics: 1,815
  • Year to date:
    • Site-wide: 3,683
  • Since beginning of last month:
    • Site-wide: 3,858

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

genomics more details view paper
  • Downloaded 1,166 times
  • Download rankings, all-time:
    • Site-wide: 22,637
    • In genomics: 2,093
  • Year to date:
    • Site-wide: 89,878
  • Since beginning of last month:
    • Site-wide: 82,944

Complete vertebrate mitogenomes reveal widespread gene duplications and repeats

genomics more details view paper
  • Downloaded 1,062 times
  • Download rankings, all-time:
    • Site-wide: 26,139
    • In genomics: 2,350
  • Year to date:
    • Site-wide: 14,631
  • Since beginning of last month:
    • Site-wide: 62,375

A chromosome-scale assembly of the major African malaria vector Anopheles funestus

bioinformatics more details view paper
  • Downloaded 640 times
  • Download rankings, all-time:
    • Site-wide: 54,026
    • In bioinformatics: 5,382
  • Year to date:
    • Site-wide: 149,560
  • Since beginning of last month:
    • Site-wide: 137,618

Merfin: improved variant filtering and polishing via k-mer validation

bioinformatics more details view paper
  • Downloaded 466 times
  • Download rankings, all-time:
    • Site-wide: 79,024
    • In bioinformatics: 7,206
  • Year to date:
    • Site-wide: 17,772
  • Since beginning of last month:
    • Site-wide: 32,923

StainedGlass: Interactive visualization of massive tandem repeat structures with identity heatmaps

bioinformatics more details view paper
  • Downloaded 417 times
  • Download rankings, all-time:
    • Site-wide: 88,768
    • In bioinformatics: 7,863
  • Year to date:
    • Site-wide: 21,174
  • Since beginning of last month:
    • Site-wide: 18,434

False gene and chromosome losses affected by assembly and sequence errors

genomics more details view paper
  • Downloaded 401 times
  • Download rankings, all-time:
    • Site-wide: 91,963
    • In genomics: 5,763
  • Year to date:
    • Site-wide: 22,395
  • Since beginning of last month:
    • Site-wide: 49,235

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