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Author: Adam M. Phillippy

  • ORCiD: http://orcid.org/0000-0003-2983-8934
  • Most recently observed institution: Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health

Rankings

  • All-time downloads: 51,412 (rank: 794 out of 428,328)
  • Categories:
    • bioinformatics: 41,531 (rank: 67 out of 36,286)
    • genomics: 9,881 (rank: 1,614 out of 44,710)

Downloads per author, site-wide

Preprints

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

bioinformatics more details view paper
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Mash: fast genome and metagenome distance estimation using MinHash

bioinformatics more details view paper
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    • In bioinformatics: 79 out of 9,295
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Telomere-to-telomere assembly of a complete human X chromosome

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A fast approximate algorithm for mapping long reads to large reference databases

bioinformatics more details view paper
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    • In bioinformatics: 192 out of 9,295
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Towards complete and error-free genome assemblies of all vertebrate species

genomics more details view paper
  • Downloaded 3,662 times
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Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control

genomics more details view paper
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High-throughput ANI Analysis of 90K Prokaryotic Genomes Reveals Clear Species Boundaries

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HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

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A Fast Adaptive Algorithm for Computing Whole-Genome Homology Maps

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    • In bioinformatics: 698 out of 9,295
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    • Site-wide: 28,611 out of 101,401

Automated ensemble assembly and validation of microbial genomes

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    • In bioinformatics: 747 out of 9,295
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Mash Screen: High-throughput sequence containment estimation for genome discovery

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    • In bioinformatics: 1,026 out of 9,295
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    • Site-wide: 45,285 out of 101,401

MetaMaps - Strain-level metagenomic assignment and compositional estimation for long reads

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    • In bioinformatics: 1,076 out of 9,295
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    • Site-wide: 24,103 out of 101,401

RefSeq database growth influences the accuracy of k-mer-based species identification

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    • In bioinformatics: 1,236 out of 9,295
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    • Site-wide: 68,953 out of 101,401

The whale shark genome reveals patterns of vertebrate gene family evolution

genomics more details view paper
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    • In genomics: 1,271 out of 6,281
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Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies

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Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

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A chromosome-scale assembly of the major African malaria vector Anopheles funestus

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    • In bioinformatics: 4,100 out of 9,295
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Complete vertebrate mitogenomes reveal widespread gene duplications and repeats

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