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Author: Marc Lipsitch

Rankings

  • All-time downloads: 276,120 (rank: 184 )
  • Categories:
    • epidemiology: 188,404 (rank: 62 )
    • evolutionary biology: 4,054 (rank: 1,054 )
    • genomics: 1,655 (rank: 16,597 (tie) )
    • hiv aids: 307 (rank: 835 (tie) )
    • infectious diseases: 81,347 (rank: 742 )
    • microbiology: 353 (rank: 47,090 (tie) )

Downloads per author, site-wide

Preprints

Social distancing strategies for curbing the COVID-19 epidemic

epidemiology more details view paper
  • Downloaded 63,749 times
  • Download rankings, all-time:
    • Site-wide: 114
    • In epidemiology: 24
  • Year to date:
    • Site-wide: 1,583
  • Since beginning of last month:
    • Site-wide: 3,323

Projecting the transmission dynamics of SARS-CoV-2 through the post-pandemic period

epidemiology more details view paper
  • Downloaded 39,732 times
  • Download rankings, all-time:
    • Site-wide: 202
    • In epidemiology: 44
  • Year to date:
    • Site-wide: 5,543
  • Since beginning of last month:
    • Site-wide: 14,331

Using predicted imports of 2019-nCoV cases to determine locations that may not be identifying all imported cases

infectious diseases more details view paper
  • Downloaded 28,901 times
  • Download rankings, all-time:
    • Site-wide: 293
    • In infectious diseases: 111
  • Year to date:
    • Site-wide: 4,407
  • Since beginning of last month:
    • Site-wide: 8,401

The role of absolute humidity on transmission rates of the COVID-19 outbreak

epidemiology more details view paper
  • Downloaded 28,587 times
  • Download rankings, all-time:
    • Site-wide: 298
    • In epidemiology: 58
  • Year to date:
    • Site-wide: 2,403
  • Since beginning of last month:
    • Site-wide: 1,844

Estimating underdetection of internationally imported COVID-19 cases

infectious diseases more details view paper
  • Downloaded 17,114 times
  • Download rankings, all-time:
    • Site-wide: 542
    • In infectious diseases: 200
  • Year to date:
    • Site-wide: 5,668
  • Since beginning of last month:
    • Site-wide: 8,221

Model-informed COVID-19 vaccine prioritization strategies by age and serostatus

infectious diseases more details view paper
  • Downloaded 11,543 times
  • Download rankings, all-time:
    • Site-wide: 905
    • In infectious diseases: 293
  • Year to date:
    • Site-wide: 594
  • Since beginning of last month:
    • Site-wide: 5,182

On the effect of age on the transmission of SARS-CoV-2 in households, schools and the community

epidemiology more details view paper
  • Downloaded 8,995 times
  • Download rankings, all-time:
    • Site-wide: 1,225
    • In epidemiology: 158
  • Year to date:
    • Site-wide: 2,976
  • Since beginning of last month:
    • Site-wide: 6,214

Practical considerations for measuring the effective reproductive number, Rt

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  • Downloaded 8,217 times
  • Download rankings, all-time:
    • Site-wide: 1,387
    • In epidemiology: 180
  • Year to date:
    • Site-wide: 2,794
  • Since beginning of last month:
    • Site-wide: 10,040

Modeling the Comparative Impact of Individual Quarantine vs. Active Monitoring of Contacts for the Mitigation of COVID-19

infectious diseases more details view paper
  • Downloaded 7,904 times
  • Download rankings, all-time:
    • Site-wide: 1,454
    • In infectious diseases: 425
  • Year to date:
    • Site-wide: 12,888
  • Since beginning of last month:
    • Site-wide: 24,842

The demand for inpatient and ICU beds for COVID-19 in the US: lessons from Chinese cities

infectious diseases more details view paper
  • Downloaded 7,317 times
  • Download rankings, all-time:
    • Site-wide: 1,593
    • In infectious diseases: 456
  • Year to date:
    • Site-wide: 14,815
  • Since beginning of last month:
    • Site-wide: 15,345

Estimating epidemiologic dynamics from single cross-sectional viral load distributions

epidemiology more details view paper
  • Downloaded 5,490 times
  • Download rankings, all-time:
    • Site-wide: 2,347
    • In epidemiology: 270
  • Year to date:
    • Site-wide: 1,365
  • Since beginning of last month:
    • Site-wide: 14,797

Interpreting vaccine efficacy trial results for infection and transmission

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  • Downloaded 5,052 times
  • Download rankings, all-time:
    • Site-wide: 2,642
    • In epidemiology: 295
  • Year to date:
    • Site-wide: 610
  • Since beginning of last month:
    • Site-wide: 6,234

Estimating the Prevalence of COVID-19 in the United States: Three Complementary Approaches

epidemiology more details view paper
  • Downloaded 4,369 times
  • Download rankings, all-time:
    • Site-wide: 3,231
    • In epidemiology: 351
  • Year to date:
    • Site-wide: 7,122
  • Since beginning of last month:
    • Site-wide: 11,517

Estimating the number of undetected COVID-19 cases exported internationally from all of China

infectious diseases more details view paper
  • Downloaded 2,335 times
  • Download rankings, all-time:
    • Site-wide: 7,927
    • In infectious diseases: 1,276
  • Year to date:
    • Site-wide: 38,409
  • Since beginning of last month:
    • Site-wide: 64,304

Post-Exposure Effects of Vaccines on Infectious Diseases

infectious diseases more details view paper
  • Downloaded 2,261 times
  • Download rankings, all-time:
    • Site-wide: 8,311
    • In infectious diseases: 1,317
  • Year to date:
    • Site-wide: 4,932
  • Since beginning of last month:
    • Site-wide: 10,603

Population impact of SARS-CoV-2 variants with enhanced transmissibility and/or partial immune escape

epidemiology more details view paper
  • Downloaded 1,933 times
  • Download rankings, all-time:
    • Site-wide: 10,480
    • In epidemiology: 806
  • Year to date:
    • Site-wide: 2,046
  • Since beginning of last month:
    • Site-wide: 9,863

Fractional Dosing of Yellow Fever Vaccine to Extend Supply: A Modeling Study

epidemiology more details view paper
  • Downloaded 1,667 times
  • Download rankings, all-time:
    • Site-wide: 13,056
    • In epidemiology: 955
  • Year to date:
    • Site-wide: 99,550
  • Since beginning of last month:
    • Site-wide: 115,981

Nowcasting by Bayesian Smoothing: A flexible, generalizable model for real-time epidemic tracking

epidemiology more details view paper
  • Downloaded 1,633 times
  • Download rankings, all-time:
    • Site-wide: 13,448
    • In epidemiology: 973
  • Year to date:
    • Site-wide: 101,734
  • Since beginning of last month:
    • Site-wide: 136,872

Measurement of vaccine direct effects under the test-negative design

epidemiology more details view paper
  • Downloaded 1,473 times
  • Download rankings, all-time:
    • Site-wide: 15,854
    • In epidemiology: 1,090
  • Year to date:
    • Site-wide: 25,017
  • Since beginning of last month:
    • Site-wide: 96,479

Predicting evolution using frequency-dependent selection in bacterial populations

evolutionary biology more details view paper
  • Downloaded 1,337 times
  • Download rankings, all-time:
    • Site-wide: 18,362
    • In evolutionary biology: 620
  • Year to date:
    • Site-wide: 77,212
  • Since beginning of last month:
    • Site-wide: 86,477

Temporal rise in the proportion of both younger adults and older adolescents among COVID-19 cases in Germany: evidence of lesser adherence to social distancing practices?

epidemiology more details view paper
  • Downloaded 1,333 times
  • Download rankings, all-time:
    • Site-wide: 18,452
    • In epidemiology: 1,213
  • Year to date:
    • Site-wide: 79,898
  • Since beginning of last month:
    • Site-wide: 127,904

Potential biases arising from epidemic dynamics in observational seroprotection studies

infectious diseases more details view paper
  • Downloaded 1,313 times
  • Download rankings, all-time:
    • Site-wide: 18,903
    • In infectious diseases: 2,004
  • Year to date:
    • Site-wide: 71,590
  • Since beginning of last month:
    • Site-wide: 128,686

SARS-CoV-2 infection and risk of clinical sequelae during the post-acute phase: a retrospective cohort study

epidemiology more details view paper
  • Downloaded 1,277 times
  • Download rankings, all-time:
    • Site-wide: 19,681
    • In epidemiology: 1,270
  • Year to date:
    • Site-wide: 3,706
  • Since beginning of last month:
    • Site-wide: 50,817

Shared genomic variants: identification of transmission routes using pathogen deep sequence data

genomics more details view paper
  • Downloaded 1,214 times
  • Download rankings, all-time:
    • Site-wide: 21,264
    • In genomics: 1,984
  • Year to date:
    • Site-wide: 144,623
  • Since beginning of last month:
    • Site-wide: 139,539

Estimating the proportion of bystander selection for antibiotic resistance among potentially pathogenic bacterial flora

epidemiology more details view paper
  • Downloaded 1,124 times
  • Download rankings, all-time:
    • Site-wide: 23,891
    • In epidemiology: 1,440
  • Year to date:
    • Site-wide: 129,739
  • Since beginning of last month:
    • Site-wide: 117,879

Antimicrobial resistance prevalence, rates of hospitalization with septicemia and rates of mortality with sepsis in adults in different US states

epidemiology more details view paper
  • Downloaded 1,052 times
  • Download rankings, all-time:
    • Site-wide: 26,470
    • In epidemiology: 1,541
  • Year to date:
    • Site-wide: 113,318
  • Since beginning of last month:
    • Site-wide: 90,925

Lockdown measures and relative changes in the age-specific incidence of SARS-CoV-2 in Spain

epidemiology more details view paper
  • Downloaded 992 times
  • Download rankings, all-time:
    • Site-wide: 28,803
    • In epidemiology: 1,625
  • Year to date:
    • Site-wide: 46,432
  • Since beginning of last month:
    • Site-wide: 31,552

On the evolutionary ecology of multidrug resistance in bacteria

evolutionary biology more details view paper
  • Downloaded 898 times
  • Download rankings, all-time:
    • Site-wide: 33,355
    • In evolutionary biology: 1,430
  • Year to date:
    • Site-wide: 142,180
  • Since beginning of last month:
    • Site-wide: 142,305

Estimating vaccine efficacy against transmission via effect on viral load

infectious diseases more details view paper
  • Downloaded 896 times
  • Download rankings, all-time:
    • Site-wide: 33,482
    • In infectious diseases: 2,691
  • Year to date:
    • Site-wide: 6,352
  • Since beginning of last month:
    • Site-wide: 19,275

The role of "spillover" in antibiotic resistance

epidemiology more details view paper
  • Downloaded 862 times
  • Download rankings, all-time:
    • Site-wide: 35,379
    • In epidemiology: 1,867
  • Year to date:
    • Site-wide: 35,293
  • Since beginning of last month:
    • Site-wide: 70,331

Statistical Properties of Stepped Wedge Cluster-Randomized Trials in Infectious Disease Outbreaks

infectious diseases more details view paper
  • Downloaded 794 times
  • Download rankings, all-time:
    • Site-wide: 39,826
    • In infectious diseases: 2,953
  • Year to date:
    • Site-wide: 42,910
  • Since beginning of last month:
    • Site-wide: 27,701

Impact of antimicrobial treatment for acute otitis media on carriage dynamics of penicillin-susceptible and penicillin non-susceptible Streptococcus pneumoniae: secondary analysis of a randomized, double-blind, placebo-controlled trial

epidemiology more details view paper
  • Downloaded 648 times
  • Download rankings, all-time:
    • Site-wide: 52,951
    • In epidemiology: 2,529
  • Year to date:
    • Site-wide: 134,669
  • Since beginning of last month:
    • Site-wide: 133,386

Analyzing Vaccine Trials in Epidemics with Mild and Asymptomatic Infection

epidemiology more details view paper
  • Downloaded 603 times
  • Download rankings, all-time:
    • Site-wide: 58,252
    • In epidemiology: 2,704
  • Year to date:
    • Site-wide: 149,471
  • Since beginning of last month:
    • Site-wide: 144,013

Simulations for Designing and Interpreting Intervention Trials in Infectious Diseases

epidemiology more details view paper
  • Downloaded 591 times
  • Download rankings, all-time:
    • Site-wide: 59,754
    • In epidemiology: 2,756
  • Year to date:
    • Site-wide: 151,471
  • Since beginning of last month:
    • Site-wide: 138,055

Resistance diagnostics as a public health tool to combat antibiotic resistance: A model-based evaluation

epidemiology more details view paper
  • Downloaded 578 times
  • Download rankings, all-time:
    • Site-wide: 61,431
    • In epidemiology: 2,816
  • Year to date:
    • Site-wide: 120,790
  • Since beginning of last month:
    • Site-wide: 57,283

Modeling the impact of racial and ethnic disparities on COVID-19 epidemic dynamics

epidemiology more details view paper
  • Downloaded 560 times
  • Download rankings, all-time:
    • Site-wide: 63,787
    • In epidemiology: 2,899
  • Year to date:
    • Site-wide: 13,321
  • Since beginning of last month:
    • Site-wide: 43,988

The distribution of antibiotic use and its association with antibiotic resistance

epidemiology more details view paper
  • Downloaded 540 times
  • Download rankings, all-time:
    • Site-wide: 66,704
    • In epidemiology: 2,999
  • Year to date:
    • Site-wide: 125,991
  • Since beginning of last month:
    • Site-wide: 63,181

Host population structure and treatment frequency maintain balancing selection on drug resistance

evolutionary biology more details view paper
  • Downloaded 534 times
  • Download rankings, all-time:
    • Site-wide: 67,649
    • In evolutionary biology: 3,353
  • Year to date:
    • Site-wide: 162,373
  • Since beginning of last month:
    • Site-wide: 149,688

Comparative performance of between-population allocation strategies for SARS-CoV-2 vaccines.

epidemiology more details view paper
  • Downloaded 517 times
  • Download rankings, all-time:
    • Site-wide: 70,286
    • In epidemiology: 3,133
  • Year to date:
    • Site-wide: 15,030
  • Since beginning of last month:
    • Site-wide: 23,807

Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data

epidemiology more details view paper
  • Downloaded 516 times
  • Download rankings, all-time:
    • Site-wide: 70,313
    • In epidemiology: 3,136
  • Year to date:
    • Site-wide: 15,051
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    • Site-wide: 21,852

Using simulation to aid trial design: ring-vaccination trials

epidemiology more details view paper
  • Downloaded 508 times
  • Download rankings, all-time:
    • Site-wide: 71,618
    • In epidemiology: 3,188
  • Year to date:
    • Site-wide: 153,000
  • Since beginning of last month:
    • Site-wide: 156,112

Trends in outpatient antibiotic prescribing practice among US older adults, 2011-2015: an observational study

epidemiology more details view paper
  • Downloaded 493 times
  • Download rankings, all-time:
    • Site-wide: 74,116
    • In epidemiology: 3,277
  • Year to date:
    • Site-wide: 149,510
  • Since beginning of last month:
    • Site-wide: 149,157

Choices in Vaccine Trial Design for Epidemics of Emerging Infections

epidemiology more details view paper
  • Downloaded 492 times
  • Download rankings, all-time:
    • Site-wide: 74,329
    • In epidemiology: 3,283
  • Year to date:
    • Site-wide: 151,324
  • Since beginning of last month:
    • Site-wide: 162,715

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

evolutionary biology more details view paper
  • Downloaded 476 times
  • Download rankings, all-time:
    • Site-wide: 77,177
    • In evolutionary biology: 3,871
  • Year to date:
    • Site-wide: 156,829
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    • Site-wide: 148,942

Population genomics of pneumococcal carriage in Massachusetts children following PCV-13 introduction

evolutionary biology more details view paper
  • Downloaded 472 times
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    • Site-wide: 77,767
    • In evolutionary biology: 3,900
  • Year to date:
    • Site-wide: 123,550
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    • Site-wide: 60,310

Evaluation of Nowcasting for Real-Time COVID-19 Tracking - New York City, March-May 2020

epidemiology more details view paper
  • Downloaded 469 times
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    • Site-wide: 78,417
    • In epidemiology: 3,441
  • Year to date:
    • Site-wide: 58,426
  • Since beginning of last month:
    • Site-wide: 53,963

Population effect of influenza vaccination under co-circulation of non-vaccine variants and the case for a multi-strain A/H3N2 vaccine component

epidemiology more details view paper
  • Downloaded 444 times
  • Download rankings, all-time:
    • Site-wide: 83,090
    • In epidemiology: 3,608
  • Year to date:
    • Site-wide: 143,919
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    • Site-wide: 124,470

Targeted surveillance strategies for efficient detection of novel antibiotic resistance variants

genomics more details view paper
  • Downloaded 441 times
  • Download rankings, all-time:
    • Site-wide: 83,759
    • In genomics: 5,426
  • Year to date:
    • Site-wide: 125,293
  • Since beginning of last month:
    • Site-wide: 50,516

Leveraging pathogen sequence and contact tracing data to enhance vaccine trials in emerging epidemics

epidemiology more details view paper
  • Downloaded 437 times
  • Download rankings, all-time:
    • Site-wide: 84,488
    • In epidemiology: 3,655
  • Year to date:
    • Site-wide: 48,860
  • Since beginning of last month:
    • Site-wide: 29,219

Potential impact of outpatient stewardship interventions on antibiotic exposures of bacterial pathogens

infectious diseases more details view paper
  • Downloaded 431 times
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    • Site-wide: 85,600
    • In infectious diseases: 4,301
  • Year to date:
    • Site-wide: 69,568
  • Since beginning of last month:
    • Site-wide: 40,584

Competing effects of indirect protection and clustering on the power of cluster-randomized controlled vaccine trials

epidemiology more details view paper
  • Downloaded 424 times
  • Download rankings, all-time:
    • Site-wide: 87,075
    • In epidemiology: 3,745
  • Year to date:
    • Site-wide: 161,450
  • Since beginning of last month:
    • Site-wide: 163,753

Identifying and alleviating bias due to differential depletion of susceptible people in post-marketing evaluations of COVID-19 vaccines

epidemiology more details view paper
  • Downloaded 381 times
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    • Site-wide: 96,244
    • In epidemiology: 4,123
  • Year to date:
    • Site-wide: 24,074
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    • Site-wide: 43,475

Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a vaccine

epidemiology more details view paper
  • Downloaded 369 times
  • Download rankings, all-time:
    • Site-wide: 99,099
    • In epidemiology: 4,232
  • Year to date:
    • Site-wide: 159,915
  • Since beginning of last month:
    • Site-wide: 149,145

Quantifying the surveillance required to sustain genetic marker-based antibiotic resistance diagnostics

microbiology more details view paper
  • Downloaded 353 times
  • Download rankings, all-time:
    • Site-wide: 103,028
    • In microbiology: 7,149
  • Year to date:
    • Site-wide: 151,987
  • Since beginning of last month:
    • Site-wide: 131,507

Outpatient prescribing of four major antibiotic classes and prevalence of antimicrobial resistance in US adults

epidemiology more details view paper
  • Downloaded 353 times
  • Download rankings, all-time:
    • Site-wide: 103,057
    • In epidemiology: 4,386
  • Year to date:
    • Site-wide: 129,530
  • Since beginning of last month:
    • Site-wide: 101,202

Programmatic goals and spatial epidemiology influence the merit of targeted versus of population-wide interventions for yaws eradication

epidemiology more details view paper
  • Downloaded 350 times
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    • Site-wide: 103,765
    • In epidemiology: 4,413
  • Year to date:
    • Site-wide: 130,586
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    • Site-wide: 127,754

Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures

evolutionary biology more details view paper
  • Downloaded 337 times
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    • Site-wide: 106,915
    • In evolutionary biology: 5,328
  • Year to date:
    • Site-wide: 136,495
  • Since beginning of last month:
    • Site-wide: 154,635

Depletion-of-susceptibles bias in influenza vaccine waning studies: how to ensure robust results

epidemiology more details view paper
  • Downloaded 334 times
  • Download rankings, all-time:
    • Site-wide: 107,630
    • In epidemiology: 4,549
  • Year to date:
    • Site-wide: 124,447
  • Since beginning of last month:
    • Site-wide: 141,158

Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial -- BCPP/ Ya Tsie trial

hiv aids more details view paper
  • Downloaded 307 times
  • Download rankings, all-time:
    • Site-wide: 114,534
    • In hiv aids: 75
  • Year to date:
    • Site-wide: 33,068
  • Since beginning of last month:
    • Site-wide: 21,107

Using the Association Between Antibiotic Susceptibility and Genetic Relatedness to Rescue Old Drugs for Empiric Use

infectious diseases more details view paper
  • Downloaded 296 times
  • Download rankings, all-time:
    • Site-wide: 117,220
    • In infectious diseases: 5,164
  • Year to date:
    • Site-wide: 119,161
  • Since beginning of last month:
    • Site-wide: 103,466

On the role of different age groups during pertussis epidemics in California, 2010 and 2014

epidemiology more details view paper
  • Downloaded 251 times
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    • Site-wide: 129,341
    • In epidemiology: 5,424
  • Year to date:
    • Site-wide: 158,099
  • Since beginning of last month:
    • Site-wide: 139,329

Large variation in the association between seasonal antibiotic use and resistance across multiple bacterial species and antibiotic classes

infectious diseases more details view paper
  • Downloaded 242 times
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    • Site-wide: 131,578
    • In infectious diseases: 5,561
  • Year to date:
    • Site-wide: 63,990
  • Since beginning of last month:
    • Site-wide: 56,379

Test negative designs with uncertainty, sensitivity, and specificity

epidemiology more details view paper
  • Downloaded 219 times
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    • Site-wide: 137,429
    • In epidemiology: 5,731
  • Year to date:
    • Site-wide: 51,575
  • Since beginning of last month:
    • Site-wide: 43,455

Herd Immunity Alters the Conditions for Performing Dose Schedule Comparisons: An Individual-based Model of Pneumococcal Carriage

epidemiology more details view paper
  • Downloaded 213 times
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    • Site-wide: 138,979
    • In epidemiology: 5,783
  • Year to date:
    • Site-wide: 162,685
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    • Site-wide: 149,979

Analysis of a meningococcal meningitis outbreak in Niger – potential effectiveness of reactive prophylaxis

epidemiology more details view paper
  • Downloaded 199 times
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    • Site-wide: 142,203
    • In epidemiology: 5,923
  • Year to date:
    • Site-wide: 157,906
  • Since beginning of last month:
    • Site-wide: 156,156

Outpatient antibiotic prescribing and demographic factors associated with state-level septicemia mortality rates in US adults

epidemiology more details view paper
  • Downloaded 189 times
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    • Site-wide: 144,747
    • In epidemiology: 6,017
  • Year to date:
    • Site-wide: 154,015
  • Since beginning of last month:
    • Site-wide: 124,791

Assessing the feasibility of Nipah vaccine efficacy trials based on previous outbreaks in Bangladesh

epidemiology more details view paper
  • Downloaded 189 times
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    • Site-wide: 144,679
    • In epidemiology: 6,010
  • Year to date:
    • Site-wide: 86,097
  • Since beginning of last month:
    • Site-wide: 100,440

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