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Author: Marc Lipsitch

Rankings

  • All-time downloads: 262,144 (rank: 148 )
  • Categories:
    • epidemiology: 178,596 (rank: 57 )
    • evolutionary biology: 3,801 (rank: 933 (tie) )
    • genomics: 1,555 (rank: 15,643 (tie) )
    • infectious diseases: 77,875 (rank: 637 )
    • microbiology: 317 (rank: 41,359 (tie) )

Downloads per author, site-wide

Preprints

Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial -- BCPP/ Ya Tsie trial

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Comparative performance of between-population allocation strategies for SARS-CoV-2 vaccines.

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Social distancing strategies for curbing the COVID-19 epidemic

epidemiology more details view paper
  • Downloaded 62,944 times
  • Download rankings, all-time:
    • Site-wide: 92
    • In epidemiology: 20
  • Year to date:
    • Site-wide: 1,257
  • Since beginning of last month:
    • Site-wide: 1,362

Projecting the transmission dynamics of SARS-CoV-2 through the post-pandemic period

epidemiology more details view paper
  • Downloaded 39,375 times
  • Download rankings, all-time:
    • Site-wide: 162
    • In epidemiology: 38
  • Year to date:
    • Site-wide: 4,523
  • Since beginning of last month:
    • Site-wide: 4,706

Using predicted imports of 2019-nCoV cases to determine locations that may not be identifying all imported cases

infectious diseases more details view paper
  • Downloaded 28,426 times
  • Download rankings, all-time:
    • Site-wide: 241
    • In infectious diseases: 90
  • Year to date:
    • Site-wide: 4,145
  • Since beginning of last month:
    • Site-wide: 6,550

The role of absolute humidity on transmission rates of the COVID-19 outbreak

epidemiology more details view paper
  • Downloaded 27,696 times
  • Download rankings, all-time:
    • Site-wide: 247
    • In epidemiology: 50
  • Year to date:
    • Site-wide: 2,969
  • Since beginning of last month:
    • Site-wide: 2,883

Estimating underdetection of internationally imported COVID-19 cases

infectious diseases more details view paper
  • Downloaded 16,703 times
  • Download rankings, all-time:
    • Site-wide: 447
    • In infectious diseases: 158
  • Year to date:
    • Site-wide: 5,362
  • Since beginning of last month:
    • Site-wide: 4,136

Model-informed COVID-19 vaccine prioritization strategies by age and serostatus

infectious diseases more details view paper
  • Downloaded 10,811 times
  • Download rankings, all-time:
    • Site-wide: 802
    • In infectious diseases: 248
  • Year to date:
    • Site-wide: 338
  • Since beginning of last month:
    • Site-wide: 1,604

On the effect of age on the transmission of SARS-CoV-2 in households, schools and the community

epidemiology more details view paper
  • Downloaded 8,528 times
  • Download rankings, all-time:
    • Site-wide: 1,080
    • In epidemiology: 140
  • Year to date:
    • Site-wide: 2,197
  • Since beginning of last month:
    • Site-wide: 4,705

Practical considerations for measuring the effective reproductive number, Rt

epidemiology more details view paper
  • Downloaded 7,757 times
  • Download rankings, all-time:
    • Site-wide: 1,223
    • In epidemiology: 152
  • Year to date:
    • Site-wide: 1,994
  • Since beginning of last month:
    • Site-wide: 4,092

Modeling the Comparative Impact of Individual Quarantine vs. Active Monitoring of Contacts for the Mitigation of COVID-19

infectious diseases more details view paper
  • Downloaded 7,726 times
  • Download rankings, all-time:
    • Site-wide: 1,233
    • In infectious diseases: 353
  • Year to date:
    • Site-wide: 8,830
  • Since beginning of last month:
    • Site-wide: 11,673

The demand for inpatient and ICU beds for COVID-19 in the US: lessons from Chinese cities

infectious diseases more details view paper
  • Downloaded 7,043 times
  • Download rankings, all-time:
    • Site-wide: 1,377
    • In infectious diseases: 380
  • Year to date:
    • Site-wide: 16,649
  • Since beginning of last month:
    • Site-wide: 17,694

Estimating epidemiologic dynamics from single cross-sectional viral load distributions

epidemiology more details view paper
  • Downloaded 5,116 times
  • Download rankings, all-time:
    • Site-wide: 2,125
    • In epidemiology: 237
  • Year to date:
    • Site-wide: 775
  • Since beginning of last month:
    • Site-wide: 1,044

Interpreting vaccine efficacy trial results for infection and transmission

epidemiology more details view paper
  • Downloaded 4,124 times
  • Download rankings, all-time:
    • Site-wide: 2,890
    • In epidemiology: 301
  • Year to date:
    • Site-wide: 366
  • Since beginning of last month:
    • Site-wide: 215

Estimating the Prevalence of COVID-19 in the United States: Three Complementary Approaches

epidemiology more details view paper
  • Downloaded 4,048 times
  • Download rankings, all-time:
    • Site-wide: 2,974
    • In epidemiology: 310
  • Year to date:
    • Site-wide: 5,976
  • Since beginning of last month:
    • Site-wide: 7,552

Estimating the number of undetected COVID-19 cases exported internationally from all of China

infectious diseases more details view paper
  • Downloaded 2,222 times
  • Download rankings, all-time:
    • Site-wide: 7,074
    • In infectious diseases: 1,062
  • Year to date:
    • Site-wide: 28,806
  • Since beginning of last month:
    • Site-wide: 27,744

Post-Exposure Effects of Vaccines on Infectious Diseases

infectious diseases more details view paper
  • Downloaded 1,873 times
  • Download rankings, all-time:
    • Site-wide: 9,081
    • In infectious diseases: 1,239
  • Year to date:
    • Site-wide: 4,095
  • Since beginning of last month:
    • Site-wide: 3,298

Fractional Dosing of Yellow Fever Vaccine to Extend Supply: A Modeling Study

epidemiology more details view paper
  • Downloaded 1,600 times
  • Download rankings, all-time:
    • Site-wide: 11,457
    • In epidemiology: 815
  • Year to date:
    • Site-wide: 83,897
  • Since beginning of last month:
    • Site-wide: 100,460

Nowcasting by Bayesian Smoothing: A flexible, generalizable model for real-time epidemic tracking

epidemiology more details view paper
  • Downloaded 1,577 times
  • Download rankings, all-time:
    • Site-wide: 11,717
    • In epidemiology: 833
  • Year to date:
    • Site-wide: 75,797
  • Since beginning of last month:
    • Site-wide: 77,452

Measurement of vaccine direct effects under the test-negative design

epidemiology more details view paper
  • Downloaded 1,325 times
  • Download rankings, all-time:
    • Site-wide: 15,179
    • In epidemiology: 1,002
  • Year to date:
    • Site-wide: 19,133
  • Since beginning of last month:
    • Site-wide: 22,330

Predicting evolution using frequency-dependent selection in bacterial populations

evolutionary biology more details view paper
  • Downloaded 1,257 times
  • Download rankings, all-time:
    • Site-wide: 16,449
    • In evolutionary biology: 600
  • Year to date:
    • Site-wide: 62,111
  • Since beginning of last month:
    • Site-wide: 79,560

Temporal rise in the proportion of both younger adults and older adolescents among COVID-19 cases in Germany: evidence of lesser adherence to social distancing practices?

epidemiology more details view paper
  • Downloaded 1,255 times
  • Download rankings, all-time:
    • Site-wide: 16,484
    • In epidemiology: 1,057
  • Year to date:
    • Site-wide: 64,747
  • Since beginning of last month:
    • Site-wide: 38,637

Potential biases arising from epidemic dynamics in observational seroprotection studies

infectious diseases more details view paper
  • Downloaded 1,241 times
  • Download rankings, all-time:
    • Site-wide: 16,748
    • In infectious diseases: 1,678
  • Year to date:
    • Site-wide: 50,896
  • Since beginning of last month:
    • Site-wide: 60,453

Shared genomic variants: identification of transmission routes using pathogen deep sequence data

genomics more details view paper
  • Downloaded 1,186 times
  • Download rankings, all-time:
    • Site-wide: 17,908
    • In genomics: 1,796
  • Year to date:
    • Site-wide: 103,752
  • Since beginning of last month:
    • Site-wide: 103,410

SARS-CoV-2 infection and risk of clinical sequelae during the post-acute phase: a retrospective cohort study

epidemiology more details view paper
  • Downloaded 1,081 times
  • Download rankings, all-time:
    • Site-wide: 20,563
    • In epidemiology: 1,240
  • Year to date:
    • Site-wide: 2,037
  • Since beginning of last month:
    • Site-wide: 7,787

Estimating the proportion of bystander selection for antibiotic resistance among potentially pathogenic bacterial flora

epidemiology more details view paper
  • Downloaded 1,080 times
  • Download rankings, all-time:
    • Site-wide: 20,597
    • In epidemiology: 1,241
  • Year to date:
    • Site-wide: 101,980
  • Since beginning of last month:
    • Site-wide: 107,189

Antimicrobial resistance prevalence, rates of hospitalization with septicemia and rates of mortality with sepsis in adults in different US states

epidemiology more details view paper
  • Downloaded 998 times
  • Download rankings, all-time:
    • Site-wide: 23,102
    • In epidemiology: 1,343
  • Year to date:
    • Site-wide: 89,615
  • Since beginning of last month:
    • Site-wide: 59,236

On the evolutionary ecology of multidrug resistance in bacteria

evolutionary biology more details view paper
  • Downloaded 861 times
  • Download rankings, all-time:
    • Site-wide: 28,597
    • In evolutionary biology: 1,285
  • Year to date:
    • Site-wide: 114,444
  • Since beginning of last month:
    • Site-wide: 136,314

Lockdown measures and relative changes in the age-specific incidence of SARS-CoV-2 in Spain

epidemiology more details view paper
  • Downloaded 861 times
  • Download rankings, all-time:
    • Site-wide: 28,566
    • In epidemiology: 1,532
  • Year to date:
    • Site-wide: 45,008
  • Since beginning of last month:
    • Site-wide: 35,761

The role of "spillover" in antibiotic resistance

epidemiology more details view paper
  • Downloaded 784 times
  • Download rankings, all-time:
    • Site-wide: 32,553
    • In epidemiology: 1,670
  • Year to date:
    • Site-wide: 20,217
  • Since beginning of last month:
    • Site-wide: 55,236

Statistical Properties of Stepped Wedge Cluster-Randomized Trials in Infectious Disease Outbreaks

infectious diseases more details view paper
  • Downloaded 675 times
  • Download rankings, all-time:
    • Site-wide: 39,899
    • In infectious diseases: 2,590
  • Year to date:
    • Site-wide: 35,555
  • Since beginning of last month:
    • Site-wide: 29,959

Impact of antimicrobial treatment for acute otitis media on carriage dynamics of penicillin-susceptible and penicillin non-susceptible Streptococcus pneumoniae: secondary analysis of a randomized, double-blind, placebo-controlled trial

epidemiology more details view paper
  • Downloaded 609 times
  • Download rankings, all-time:
    • Site-wide: 45,450
    • In epidemiology: 2,165
  • Year to date:
    • Site-wide: 101,900
  • Since beginning of last month:
    • Site-wide: 141,601

Analyzing Vaccine Trials in Epidemics with Mild and Asymptomatic Infection

epidemiology more details view paper
  • Downloaded 573 times
  • Download rankings, all-time:
    • Site-wide: 48,987
    • In epidemiology: 2,264
  • Year to date:
    • Site-wide: 119,962
  • Since beginning of last month:
    • Site-wide: 109,768

Simulations for Designing and Interpreting Intervention Trials in Infectious Diseases

epidemiology more details view paper
  • Downloaded 567 times
  • Download rankings, all-time:
    • Site-wide: 49,655
    • In epidemiology: 2,283
  • Year to date:
    • Site-wide: 113,747
  • Since beginning of last month:
    • Site-wide: 109,888

Host population structure and treatment frequency maintain balancing selection on drug resistance

evolutionary biology more details view paper
  • Downloaded 514 times
  • Download rankings, all-time:
    • Site-wide: 55,945
    • In evolutionary biology: 2,946
  • Year to date:
    • Site-wide: 140,164
  • Since beginning of last month:
    • Site-wide: 130,856

Resistance diagnostics as a public health tool to combat antibiotic resistance: A model-based evaluation

epidemiology more details view paper
  • Downloaded 512 times
  • Download rankings, all-time:
    • Site-wide: 56,155
    • In epidemiology: 2,483
  • Year to date:
    • Site-wide: 123,563
  • Since beginning of last month:
    • Site-wide: 128,240

Estimating vaccine efficacy against transmission via effect on viral load

infectious diseases more details view paper
  • Downloaded 491 times
  • Download rankings, all-time:
    • Site-wide: 58,834
    • In infectious diseases: 3,107
  • Year to date:
    • Site-wide: 6,386
  • Since beginning of last month:
    • Site-wide: 1,005

Using simulation to aid trial design: ring-vaccination trials

epidemiology more details view paper
  • Downloaded 489 times
  • Download rankings, all-time:
    • Site-wide: 59,103
    • In epidemiology: 2,601
  • Year to date:
    • Site-wide: 109,018
  • Since beginning of last month:
    • Site-wide: 111,256

The distribution of antibiotic use and its association with antibiotic resistance

epidemiology more details view paper
  • Downloaded 478 times
  • Download rankings, all-time:
    • Site-wide: 60,644
    • In epidemiology: 2,660
  • Year to date:
    • Site-wide: 126,531
  • Since beginning of last month:
    • Site-wide: 108,410

Choices in Vaccine Trial Design for Epidemics of Emerging Infections

epidemiology more details view paper
  • Downloaded 477 times
  • Download rankings, all-time:
    • Site-wide: 60,725
    • In epidemiology: 2,665
  • Year to date:
    • Site-wide: 99,318
  • Since beginning of last month:
    • Site-wide: 102,732

Trends in outpatient antibiotic prescribing practice among US older adults, 2011-2015: an observational study

epidemiology more details view paper
  • Downloaded 466 times
  • Download rankings, all-time:
    • Site-wide: 62,316
    • In epidemiology: 2,723
  • Year to date:
    • Site-wide: 113,724
  • Since beginning of last month:
    • Site-wide: 126,231

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

evolutionary biology more details view paper
  • Downloaded 448 times
  • Download rankings, all-time:
    • Site-wide: 64,976
    • In evolutionary biology: 3,460
  • Year to date:
    • Site-wide: 136,662
  • Since beginning of last month:
    • Site-wide: 142,473

Modeling the impact of racial and ethnic disparities on COVID-19 epidemic dynamics

epidemiology more details view paper
  • Downloaded 409 times
  • Download rankings, all-time:
    • Site-wide: 71,256
    • In epidemiology: 3,052
  • Year to date:
    • Site-wide: 8,316
  • Since beginning of last month:
    • Site-wide: 7,623

Competing effects of indirect protection and clustering on the power of cluster-randomized controlled vaccine trials

epidemiology more details view paper
  • Downloaded 407 times
  • Download rankings, all-time:
    • Site-wide: 71,528
    • In epidemiology: 3,067
  • Year to date:
    • Site-wide: 133,685
  • Since beginning of last month:
    • Site-wide: 126,200

Population genomics of pneumococcal carriage in Massachusetts children following PCV-13 introduction

evolutionary biology more details view paper
  • Downloaded 404 times
  • Download rankings, all-time:
    • Site-wide: 72,042
    • In evolutionary biology: 3,836
  • Year to date:
    • Site-wide: 131,410
  • Since beginning of last month:
    • Site-wide: 118,067

Population effect of influenza vaccination under co-circulation of non-vaccine variants and the case for a multi-strain A/H3N2 vaccine component

epidemiology more details view paper
  • Downloaded 398 times
  • Download rankings, all-time:
    • Site-wide: 73,090
    • In epidemiology: 3,107
  • Year to date:
    • Site-wide: 134,051
  • Since beginning of last month:
    • Site-wide: 111,269

Targeted surveillance strategies for efficient detection of novel antibiotic resistance variants

genomics more details view paper
  • Downloaded 369 times
  • Download rankings, all-time:
    • Site-wide: 78,395
    • In genomics: 5,226
  • Year to date:
    • Site-wide: 140,872
  • Since beginning of last month:
    • Site-wide: 122,542

Evaluation of Nowcasting for Real-Time COVID-19 Tracking - New York City, March-May 2020

epidemiology more details view paper
  • Downloaded 356 times
  • Download rankings, all-time:
    • Site-wide: 80,696
    • In epidemiology: 3,387
  • Year to date:
    • Site-wide: 55,588
  • Since beginning of last month:
    • Site-wide: 69,309

Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a vaccine

epidemiology more details view paper
  • Downloaded 345 times
  • Download rankings, all-time:
    • Site-wide: 82,885
    • In epidemiology: 3,468
  • Year to date:
    • Site-wide: 139,183
  • Since beginning of last month:
    • Site-wide: 126,210

Near real-time surveillance of the SARS-CoV-2 epidemic with incomplete data

epidemiology more details view paper
  • Downloaded 339 times
  • Download rankings, all-time:
    • Site-wide: 84,287
    • In epidemiology: 3,516
  • Year to date:
    • Site-wide: 10,842
  • Since beginning of last month:
    • Site-wide: 24,749

Quantifying the surveillance required to sustain genetic marker-based antibiotic resistance diagnostics

microbiology more details view paper
  • Downloaded 317 times
  • Download rankings, all-time:
    • Site-wide: 88,758
    • In microbiology: 6,246
  • Year to date:
    • Site-wide: 137,129
  • Since beginning of last month:
    • Site-wide: 127,594

Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures

evolutionary biology more details view paper
  • Downloaded 317 times
  • Download rankings, all-time:
    • Site-wide: 88,856
    • In evolutionary biology: 4,692
  • Year to date:
    • Site-wide: 79,678
  • Since beginning of last month:
    • Site-wide: 115,195

Potential impact of outpatient stewardship interventions on antibiotic exposures of bacterial pathogens

infectious diseases more details view paper
  • Downloaded 309 times
  • Download rankings, all-time:
    • Site-wide: 90,545
    • In infectious diseases: 3,858
  • Year to date:
    • Site-wide: 88,282
  • Since beginning of last month:
    • Site-wide: 96,493

Leveraging pathogen sequence and contact tracing data to enhance vaccine trials in emerging epidemics

epidemiology more details view paper
  • Downloaded 297 times
  • Download rankings, all-time:
    • Site-wide: 93,208
    • In epidemiology: 3,856
  • Year to date:
    • Site-wide: 53,784
  • Since beginning of last month:
    • Site-wide: 42,088

Outpatient prescribing of four major antibiotic classes and prevalence of antimicrobial resistance in US adults

epidemiology more details view paper
  • Downloaded 293 times
  • Download rankings, all-time:
    • Site-wide: 93,963
    • In epidemiology: 3,898
  • Year to date:
    • Site-wide: 129,750
  • Since beginning of last month:
    • Site-wide: 108,348

Programmatic goals and spatial epidemiology influence the merit of targeted versus of population-wide interventions for yaws eradication

epidemiology more details view paper
  • Downloaded 293 times
  • Download rankings, all-time:
    • Site-wide: 93,990
    • In epidemiology: 3,892
  • Year to date:
    • Site-wide: 126,734
  • Since beginning of last month:
    • Site-wide: 109,205

Depletion-of-susceptibles bias in influenza vaccine waning studies: how to ensure robust results

epidemiology more details view paper
  • Downloaded 286 times
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    • Site-wide: 95,575
    • In epidemiology: 3,969
  • Year to date:
    • Site-wide: 98,375
  • Since beginning of last month:
    • Site-wide: 65,248

Using the Association Between Antibiotic Susceptibility and Genetic Relatedness to Rescue Old Drugs for Empiric Use

infectious diseases more details view paper
  • Downloaded 234 times
  • Download rankings, all-time:
    • Site-wide: 107,634
    • In infectious diseases: 4,313
  • Year to date:
    • Site-wide: 111,125
  • Since beginning of last month:
    • Site-wide: 96,065

On the role of different age groups during pertussis epidemics in California, 2010 and 2014

epidemiology more details view paper
  • Downloaded 227 times
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    • Site-wide: 109,297
    • In epidemiology: 4,551
  • Year to date:
    • Site-wide: 133,329
  • Since beginning of last month:
    • Site-wide: 132,081

Herd Immunity Alters the Conditions for Performing Dose Schedule Comparisons: An Individual-based Model of Pneumococcal Carriage

epidemiology more details view paper
  • Downloaded 192 times
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    • Site-wide: 117,617
    • In epidemiology: 4,869
  • Year to date:
    • Site-wide: 141,888
  • Since beginning of last month:
    • Site-wide: 142,918

Analysis of a meningococcal meningitis outbreak in Niger – potential effectiveness of reactive prophylaxis

epidemiology more details view paper
  • Downloaded 174 times
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    • Site-wide: 121,729
    • In epidemiology: 5,049
  • Year to date:
    • Site-wide: 135,843
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    • Site-wide: 137,953

Outpatient antibiotic prescribing and demographic factors associated with state-level septicemia mortality rates in US adults

epidemiology more details view paper
  • Downloaded 149 times
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    • Site-wide: 127,389
    • In epidemiology: 5,265
  • Year to date:
    • Site-wide: 143,327
  • Since beginning of last month:
    • Site-wide: 141,933

Large variation in the association between seasonal antibiotic use and resistance across multiple bacterial species and antibiotic classes

infectious diseases more details view paper
  • Downloaded 121 times
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    • Site-wide: 133,176
    • In infectious diseases: 5,029
  • Year to date:
    • Site-wide: 73,136
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    • Site-wide: 87,652

Assessing the feasibility of Nipah vaccine efficacy trials based on previous outbreaks in Bangladesh

epidemiology more details view paper
  • Downloaded 111 times
  • Download rankings, all-time:
    • Site-wide: 135,062
    • In epidemiology: 5,520
  • Year to date:
    • Site-wide: 73,176
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    • Site-wide: 74,361

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