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Author: Sudhir Kumar

Rankings

  • All-time downloads: 8,880 (rank: 19,151 (tie) )
  • Categories:
    • bioinformatics: 318 (rank: 29,278 (tie) )
    • cancer biology: 1,154 (rank: 5,466 (tie) )
    • ecology: 433 (rank: 8,885 (tie) )
    • evolutionary biology: 5,850 (rank: 400 )
    • genetics: 512 (rank: 23,665 (tie) )
    • genomics: 470 (rank: 33,755 (tie) )
    • microbiology: 143 (rank: 48,897 (tie) )

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Preprints

Osa-miR820 regulatory node primes rice plants to tolerate salt stress in an agronomically advantageous manner

plant biology more details view paper

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An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic

evolutionary biology more details view paper
  • Downloaded 1,675 times
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    • Site-wide: 8,543
    • In evolutionary biology: 272
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
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A new method for detecting autocorrelation of evolutionary rates in large phylogenies

evolutionary biology more details view paper
  • Downloaded 837 times
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    • Site-wide: 23,995
    • In evolutionary biology: 1,158
  • Year to date:
    • Site-wide: 67,628
  • Since beginning of last month:
    • Site-wide: 57,174

Genetic mapping of fitness determinants across the malaria parasite Plasmodium falciparum life cycle

evolutionary biology more details view paper
  • Downloaded 603 times
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    • Site-wide: 37,367
    • In evolutionary biology: 1,980
  • Year to date:
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Theoretical foundation of the RelTime method for estimating divergence times from variable evolutionary rates

evolutionary biology more details view paper
  • Downloaded 577 times
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    • Site-wide: 39,499
    • In evolutionary biology: 2,143
  • Year to date:
    • Site-wide: 105,025
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The genome sequence of Aloe vera reveals adaptive evolution of drought tolerance mechanisms

genomics more details view paper
  • Downloaded 470 times
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    • Site-wide: 50,477
    • In genomics: 3,970
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Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data

cancer biology more details view paper
  • Downloaded 457 times
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    • Site-wide: 52,023
    • In cancer biology: 1,457
  • Year to date:
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RelTime relaxes the strict molecular clock throughout the phylogeny

evolutionary biology more details view paper
  • Downloaded 441 times
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    • Site-wide: 54,131
    • In evolutionary biology: 3,058
  • Year to date:
    • Site-wide: 73,888
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    • Site-wide: 117,105

Molecular dating for phylogenies containing a mix of populations and species

ecology more details view paper
  • Downloaded 433 times
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    • Site-wide: 55,168
    • In ecology: 1,520
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A new method for inferring timetrees from temporally sampled molecular sequences

evolutionary biology more details view paper
  • Downloaded 429 times
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    • Site-wide: 55,750
    • In evolutionary biology: 3,164
  • Year to date:
    • Site-wide: 100,389
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Computational enhancement of single-cell sequences for inferring tumor evolution

cancer biology more details view paper
  • Downloaded 370 times
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    • Site-wide: 64,390
    • In cancer biology: 1,832
  • Year to date:
    • Site-wide: 70,277
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Surprising variation in the outcome of two malaria genetic crosses using humanized mice: implications for genetic mapping and malaria biology

genetics more details view paper
  • Downloaded 360 times
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    • Site-wide: 65,992
    • In genetics: 3,142
  • Year to date:
    • Site-wide: 56,099
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    • Site-wide: 74,064

Adaptive landscape of protein variation in human exomes

evolutionary biology more details view paper
  • Downloaded 349 times
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    • Site-wide: 67,904
    • In evolutionary biology: 3,864
  • Year to date:
    • Site-wide: 86,882
  • Since beginning of last month:
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Reliable confidence intervals for RelTime estimates of evolutionary divergence times

evolutionary biology more details view paper
  • Downloaded 332 times
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    • Site-wide: 70,852
    • In evolutionary biology: 4,023
  • Year to date:
    • Site-wide: 82,022
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    • Site-wide: 119,782

Predicting clone genotypes from tumor bulk sequencing of multiple samples

cancer biology more details view paper
  • Downloaded 327 times
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    • Site-wide: 71,750
    • In cancer biology: 2,089
  • Year to date:
    • Site-wide: 121,803
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On estimating evolutionary probabilities of population variants

evolutionary biology more details view paper
  • Downloaded 265 times
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    • Site-wide: 83,604
    • In evolutionary biology: 4,664
  • Year to date:
    • Site-wide: 78,877
  • Since beginning of last month:
    • Site-wide: 92,758

Relative efficiencies of simple and complex substitution models in estimating divergence times in phylogenomics

evolutionary biology more details view paper
  • Downloaded 178 times
  • Download rankings, all-time:
    • Site-wide: 101,970
    • In evolutionary biology: 5,475
  • Year to date:
    • Site-wide: 120,458
  • Since beginning of last month:
    • Site-wide: 119,787

PathFinder: Bayesian inference of clone migration histories in cancer

evolutionary biology more details view paper
  • Downloaded 164 times
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    • Site-wide: 104,598
    • In evolutionary biology: 5,612
  • Year to date:
    • Site-wide: 47,216
  • Since beginning of last month:
    • Site-wide: 60,620

TreeMap: A Structured Approach to Fine Mapping of eQTL Variants

bioinformatics more details view paper
  • Downloaded 163 times
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    • Site-wide: 104,856
    • In bioinformatics: 8,881
  • Year to date:
    • Site-wide: 85,313
  • Since beginning of last month:
    • Site-wide: 84,487

Using a GTR+Γ substitution model for dating sequence divergence when stationarity and time-reversibility assumptions are violated

bioinformatics more details view paper
  • Downloaded 155 times
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    • Site-wide: 106,398
    • In bioinformatics: 8,971
  • Year to date:
    • Site-wide: 79,814
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Bulk Segregant Approaches to Nutritional Genomics in Plasmodium falciparum

genetics more details view paper
  • Downloaded 152 times
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    • Site-wide: 106,921
    • In genetics: 4,787
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    • Site-wide: 55,462
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Platelet Derived Growth Factor Receptor β (PDGFRβ) is a Host Receptor for the human malaria parasite adhesin TRAP

microbiology more details view paper
  • Downloaded 143 times
  • Download rankings, all-time:
    • Site-wide: 108,504
    • In microbiology: 8,249
  • Year to date:
    • Site-wide: 89,536
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    • Site-wide: 58,694

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