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Author: Michael Inouye

Rankings

  • All-time downloads: 52,579 (rank: 2,630 )
  • Categories:
    • bioinformatics: 5,120 (rank: 2,292 )
    • epidemiology: 3,906 (rank: 2,910 )
    • gastroenterology: 618 (rank: 523 (tie) )
    • genetic and genomic medicine: 7,887 (rank: 83 )
    • genetics: 11,472 (rank: 1,319 )
    • genomics: 17,364 (rank: 680 )
    • microbiology: 2,776 (rank: 4,765 )
    • rheumatology: 448 (rank: 494 (tie) )
    • systems biology: 2,988 (rank: 1,242 )

Downloads per author, site-wide

Preprints

OGUs enable effective, phylogeny-aware analysis of even shallow metagenome community structures

bioinformatics more details view paper

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Genomic risk prediction of coronary artery disease in nearly 500,000 adults: implications for early screening and primary prevention

genetics more details view paper
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    • Site-wide: 2,618
    • In genetics: 100
  • Year to date:
    • Site-wide: 41,449
  • Since beginning of last month:
    • Site-wide: 58,385

Taxonomic Signatures of Long-Term Mortality Risk in Human Gut Microbiota

epidemiology more details view paper
  • Downloaded 3,450 times
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    • Site-wide: 3,365
    • In epidemiology: 330
  • Year to date:
    • Site-wide: 15,331
  • Since beginning of last month:
    • Site-wide: 13,844

Correcting index databases improves metagenomic studies

bioinformatics more details view paper
  • Downloaded 2,313 times
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    • Site-wide: 6,010
    • In bioinformatics: 689
  • Year to date:
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    • Site-wide: 30,527

Fast Principal Component Analysis of Large-Scale Genome-Wide Data

genomics more details view paper
  • Downloaded 2,117 times
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    • Site-wide: 6,832
    • In genomics: 758
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 79,672

Improving reporting standards for polygenic scores in risk prediction studies

genetic and genomic medicine more details view paper
  • Downloaded 2,111 times
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    • Site-wide: 6,857
    • In genetic and genomic medicine: 23
  • Year to date:
    • Site-wide: 2,233
  • Since beginning of last month:
    • Site-wide: 1,531

The Polygenic and Monogenic Basis of Blood Traits and Diseases

genetic and genomic medicine more details view paper
  • Downloaded 2,006 times
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    • Site-wide: 7,375
    • In genetic and genomic medicine: 25
  • Year to date:
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    • Site-wide: 17,982

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

microbiology more details view paper
  • Downloaded 1,936 times
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    • Site-wide: 7,795
    • In microbiology: 436
  • Year to date:
    • Site-wide: 6,048
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    • Site-wide: 13,835

Integrative analysis of the plasma proteome and polygenic risk of cardiometabolic diseases

genetics more details view paper
  • Downloaded 1,763 times
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    • Site-wide: 8,990
    • In genetics: 428
  • Year to date:
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  • Since beginning of last month:
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Elevated alpha-1 antitrypsin is a major component of GlycA-associated risk for future morbidity and mortality

systems biology more details view paper
  • Downloaded 1,706 times
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    • Site-wide: 9,467
    • In systems biology: 179
  • Year to date:
    • Site-wide: 21,463
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    • Site-wide: 35,771

Epistasis within the MHC contributes to the genetic architecture of celiac disease

genomics more details view paper
  • Downloaded 1,610 times
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    • Site-wide: 10,277
    • In genomics: 1,118
  • Year to date:
    • Site-wide: 68,884
  • Since beginning of last month:
    • Site-wide: 114,717

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

genomics more details view paper
  • Downloaded 1,588 times
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    • Site-wide: 10,482
    • In genomics: 1,135
  • Year to date:
    • Site-wide: 68,501
  • Since beginning of last month:
    • Site-wide: 72,205

Learning polygenic scores for human blood cell traits

genetics more details view paper
  • Downloaded 1,491 times
  • Download rankings, all-time:
    • Site-wide: 11,442
    • In genetics: 556
  • Year to date:
    • Site-wide: 18,867
  • Since beginning of last month:
    • Site-wide: 18,258

The Polygenic Score Catalog: an open database for reproducibility and systematic evaluation

genetic and genomic medicine more details view paper
  • Downloaded 1,366 times
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    • Site-wide: 13,121
    • In genetic and genomic medicine: 46
  • Year to date:
    • Site-wide: 5,113
  • Since beginning of last month:
    • Site-wide: 5,254

FlashPCA2: principal component analysis of biobank-scale genotype datasets

genomics more details view paper
  • Downloaded 1,304 times
  • Download rankings, all-time:
    • Site-wide: 14,071
    • In genomics: 1,491
  • Year to date:
    • Site-wide: 55,262
  • Since beginning of last month:
    • Site-wide: 58,319

The carbon footprint of bioinformatics

bioinformatics more details view paper
  • Downloaded 1,301 times
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    • Site-wide: 14,126
    • In bioinformatics: 1,726
  • Year to date:
    • Site-wide: 763
  • Since beginning of last month:
    • Site-wide: 227

Genomic analysis of Mycobacterium tuberculosis reveals complex etiology of tuberculosis in Vietnam including frequent introduction and transmission of Beijing lineage and positive selection for EsxW Beijing variant

genomics more details view paper
  • Downloaded 1,255 times
  • Download rankings, all-time:
    • Site-wide: 14,911
    • In genomics: 1,551
  • Year to date:
    • Site-wide: 92,919
  • Since beginning of last month:
    • Site-wide: 87,829

Identification of Brain Expression Quantitative Trait Loci Associated with Schizophrenia and Affective Disorders in Normal Brain Tissue

genetics more details view paper
  • Downloaded 1,210 times
  • Download rankings, all-time:
    • Site-wide: 15,771
    • In genetics: 779
  • Year to date:
    • Site-wide: 116,990
  • Since beginning of last month:
    • Site-wide: 113,912

Power, false discovery rate and Winner's Curse in eQTL studies

genetics more details view paper
  • Downloaded 1,193 times
  • Download rankings, all-time:
    • Site-wide: 16,094
    • In genetics: 795
  • Year to date:
    • Site-wide: 103,483
  • Since beginning of last month:
    • Site-wide: 112,453

Genetic loci associated with coronary artery disease harbor evidence of selection and antagonistic pleiotropy

genomics more details view paper
  • Downloaded 1,182 times
  • Download rankings, all-time:
    • Site-wide: 16,329
    • In genomics: 1,690
  • Year to date:
    • Site-wide: 64,330
  • Since beginning of last month:
    • Site-wide: 58,291

Genomic prediction of coronary heart disease

genomics more details view paper
  • Downloaded 1,164 times
  • Download rankings, all-time:
    • Site-wide: 16,701
    • In genomics: 1,735
  • Year to date:
    • Site-wide: 113,708
  • Since beginning of last month:
    • Site-wide: 108,715

The infant airway microbiome in health and disease impacts later asthma development

genomics more details view paper
  • Downloaded 1,077 times
  • Download rankings, all-time:
    • Site-wide: 18,724
    • In genomics: 1,904
  • Year to date:
    • Site-wide: 86,499
  • Since beginning of last month:
    • Site-wide: 114,658

Use of polygenic risk scores and other molecular markers to enhance cardiovascular risk prediction: Prospective cohort study and modelling analysis

genomics more details view paper
  • Downloaded 1,076 times
  • Download rankings, all-time:
    • Site-wide: 18,766
    • In genomics: 1,907
  • Year to date:
    • Site-wide: 48,075
  • Since beginning of last month:
    • Site-wide: 49,984

Multivariate genome-wide association analysis of a cytokine network reveals variants with widespread immune, haematological and cardiometabolic pleiotropy

genomics more details view paper
  • Downloaded 956 times
  • Download rankings, all-time:
    • Site-wide: 22,251
    • In genomics: 2,183
  • Year to date:
    • Site-wide: 87,637
  • Since beginning of last month:
    • Site-wide: 91,911

Genome-wide association and Mendelian randomization analysis prioritizes bioactive metabolites with putative causal effects on common diseases

genetic and genomic medicine more details view paper
  • Downloaded 934 times
  • Download rankings, all-time:
    • Site-wide: 23,015
    • In genetic and genomic medicine: 76
  • Year to date:
    • Site-wide: 14,018
  • Since beginning of last month:
    • Site-wide: 13,930

Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

genetic and genomic medicine more details view paper
  • Downloaded 859 times
  • Download rankings, all-time:
    • Site-wide: 25,931
    • In genetic and genomic medicine: 84
  • Year to date:
    • Site-wide: 14,657
  • Since beginning of last month:
    • Site-wide: 12,766

EcOH: In silico serotyping of E. coli from short read data

microbiology more details view paper
  • Downloaded 840 times
  • Download rankings, all-time:
    • Site-wide: 26,775
    • In microbiology: 1,567
  • Year to date:
    • Site-wide: 68,411
  • Since beginning of last month:
    • Site-wide: 63,993

Towards a molecular systems model of coronary artery disease

systems biology more details view paper
  • Downloaded 826 times
  • Download rankings, all-time:
    • Site-wide: 27,413
    • In systems biology: 585
  • Year to date:
    • Site-wide: 117,075
  • Since beginning of last month:
    • Site-wide: 108,746

Dynamics of the upper airway microbiome in the pathogenesis of asthma-associated persistent wheeze in preschool children

genetics more details view paper
  • Downloaded 797 times
  • Download rankings, all-time:
    • Site-wide: 28,819
    • In genetics: 1,395
  • Year to date:
    • Site-wide: 99,029
  • Since beginning of last month:
    • Site-wide: 114,261

FlashPCA: fast sparse canonical correlation analysis of genomic data

genomics more details view paper
  • Downloaded 790 times
  • Download rankings, all-time:
    • Site-wide: 29,174
    • In genomics: 2,664
  • Year to date:
    • Site-wide: 102,896
  • Since beginning of last month:
    • Site-wide: 79,949

Genomic risk score offers predictive performance comparable to clinical risk factors for ischaemic stroke

genomics more details view paper
  • Downloaded 788 times
  • Download rankings, all-time:
    • Site-wide: 29,279
    • In genomics: 2,667
  • Year to date:
    • Site-wide: 108,718
  • Since beginning of last month:
    • Site-wide: 100,823

A scalable permutation approach reveals replication and preservation patterns of gene coexpression modules

bioinformatics more details view paper
  • Downloaded 779 times
  • Download rankings, all-time:
    • Site-wide: 29,735
    • In bioinformatics: 3,402
  • Year to date:
    • Site-wide: 124,737
  • Since beginning of last month:
    • Site-wide: 116,264

An interaction map of circulating metabolites, immune gene networks and their genetic regulation

genomics more details view paper
  • Downloaded 767 times
  • Download rankings, all-time:
    • Site-wide: 30,418
    • In genomics: 2,746
  • Year to date:
    • Site-wide: 108,559
  • Since beginning of last month:
    • Site-wide: 87,837

FastSpar: Rapid and scalable correlation estimation for compositional data

bioinformatics more details view paper
  • Downloaded 727 times
  • Download rankings, all-time:
    • Site-wide: 32,830
    • In bioinformatics: 3,678
  • Year to date:
    • Site-wide: 66,407
  • Since beginning of last month:
    • Site-wide: 79,570

Links between gut microbiome composition and fatty liver disease in a large population sample

gastroenterology more details view paper
  • Downloaded 618 times
  • Download rankings, all-time:
    • Site-wide: 40,622
    • In gastroenterology: 34
  • Year to date:
    • Site-wide: 12,195
  • Since beginning of last month:
    • Site-wide: 12,986

Exploratory analysis and error modeling of a sequencing technology

genomics more details view paper
  • Downloaded 614 times
  • Download rankings, all-time:
    • Site-wide: 40,932
    • In genomics: 3,393
  • Year to date:
    • Site-wide: 103,409
  • Since beginning of last month:
    • Site-wide: 99,813

GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene Associations Controlled for Population Structure

genomics more details view paper
  • Downloaded 549 times
  • Download rankings, all-time:
    • Site-wide: 47,097
    • In genomics: 3,747
  • Year to date:
    • Site-wide: 100,302
  • Since beginning of last month:
    • Site-wide: 103,999

Early prediction of liver disease using conventional risk factors and gut microbiome-augmented gradient boosting

genetic and genomic medicine more details view paper
  • Downloaded 530 times
  • Download rankings, all-time:
    • Site-wide: 49,007
    • In genetic and genomic medicine: 153
  • Year to date:
    • Site-wide: 35,247
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    • Site-wide: 29,888

Systems medicine links microbial inflammatory response with glycoprotein-associated mortality risk

genomics more details view paper
  • Downloaded 527 times
  • Download rankings, all-time:
    • Site-wide: 49,366
    • In genomics: 3,893
  • Year to date:
    • Site-wide: 125,785
  • Since beginning of last month:
    • Site-wide: 131,838

Genome-wide analysis of genetic risk factors for rheumatic heart disease in Aboriginal Australians provides support for pathogenic molecular mimicry

genetics more details view paper
  • Downloaded 519 times
  • Download rankings, all-time:
    • Site-wide: 50,224
    • In genetics: 2,343
  • Year to date:
    • Site-wide: 110,235
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    • Site-wide: 99,509

Non-parametric mixture models identify trajectories of childhood immune development relevant to asthma and allergy

systems biology more details view paper
  • Downloaded 456 times
  • Download rankings, all-time:
    • Site-wide: 58,174
    • In systems biology: 1,394
  • Year to date:
    • Site-wide: 103,340
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    • Site-wide: 87,758

The landscape of incident disease risk for the biomarker GlycA and its mortality stratification in angiography patients

epidemiology more details view paper
  • Downloaded 456 times
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    • Site-wide: 58,186
    • In epidemiology: 2,510
  • Year to date:
    • Site-wide: 102,421
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    • Site-wide: 108,154

Genomic risk scores for juvenile idiopathic arthritis and its subtypes

rheumatology more details view paper
  • Downloaded 448 times
  • Download rankings, all-time:
    • Site-wide: 59,236
    • In rheumatology: 33
  • Year to date:
    • Site-wide: 89,902
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    • Site-wide: 95,694

Neonatal genetics of gene expression reveal the origins of autoimmune and allergic disease risk

genetics more details view paper
  • Downloaded 401 times
  • Download rankings, all-time:
    • Site-wide: 66,352
    • In genetics: 3,065
  • Year to date:
    • Site-wide: 110,534
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    • Site-wide: 89,190

A polygenic risk score for coronary heart disease performs well in individuals aged 70 years and older

genetic and genomic medicine more details view paper
  • Downloaded 81 times
  • Download rankings, all-time:
    • Site-wide: 129,772
    • In genetic and genomic medicine: 637
  • Year to date:
    • Site-wide: 30,981
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