Author: Ruedi Aebersold
- ORCiD: http://orcid.org/0000-0002-9576-3267
- Most recently observed institution: ETH Zurich
Rankings
- All-time downloads: 62,063 (rank: 4,013 )
- Categories:
- biochemistry: 10,300 (rank: 317 )
- bioinformatics: 5,241 (rank: 3,560 (tie) )
- biophysics: 2,955 (rank: 2,435 (tie) )
- cancer biology: 2,698 (rank: 4,045 (tie) )
- cell biology: 1,860 (rank: 6,973 (tie) )
- evolutionary biology: 512 (rank: 20,601 (tie) )
- microbiology: 643 (rank: 38,966 (tie) )
- neuroscience: 1,027 (rank: 39,868 (tie) )
- oncology: 2,361 (rank: 261 (tie) )
- pediatrics: 465 (rank: 2,373 (tie) )
- physiology: 968 (rank: 2,372 (tie) )
- plant biology: 635 (rank: 13,191 (tie) )
- systems biology: 31,458 (rank: 132 )
Downloads per author, site-wide
Preprints
Parallel accumulation – serial fragmentation combined with data-independent acquisition (diaPASEF): Bottom-up proteomics with near optimal ion usage
systems biology more details view paper- Downloaded 4,986 times
- Download rankings, all-time:
- Site-wide: 3,514
- In systems biology: 42
- Year to date:
- Site-wide: 8,840
- Since beginning of last month:
- Site-wide: 26,340
Automated SWATH Data Analysis Using Targeted Extraction of Ion Chromatograms
bioinformatics more details view paper- Downloaded 3,875 times
- Download rankings, all-time:
- Site-wide: 5,027
- In bioinformatics: 444
- Year to date:
- Site-wide: 178,844
- Since beginning of last month:
- Site-wide: 93,713
Genomic, Proteomic and Phenotypic Heterogeneity in HeLa Cells across Laboratories: Implications for Reproducibility of Research Results
systems biology more details view paper- Downloaded 3,220 times
- Download rankings, all-time:
- Site-wide: 6,628
- In systems biology: 98
- Year to date:
- Site-wide: 22,710
- Since beginning of last month:
- Site-wide: 59,687
Multi-Omic Profiling of the Liver Across Diets and Age in a Diverse Mouse Population
systems biology more details view paper- Downloaded 3,005 times
- Download rankings, all-time:
- Site-wide: 7,294
- In systems biology: 113
- Year to date:
- Site-wide: 1,453
- Since beginning of last month:
- Site-wide: 13,196
Principles of gene regulation quantitatively connect DNA to RNA and proteins in bacteria
systems biology more details view paper- Downloaded 2,516 times
- Download rankings, all-time:
- Site-wide: 9,476
- In systems biology: 164
- Year to date:
- Site-wide: 1,183
- Since beginning of last month:
- Site-wide: 355
Protein Classifier for Thyroid Nodules Learned from Rapidly Acquired Proteotypes
oncology more details view paper- Downloaded 2,381 times
- Download rankings, all-time:
- Site-wide: 10,338
- In oncology: 11
- Year to date:
- Site-wide: 38,948
- Since beginning of last month:
- Site-wide: 34,531
JARID2 and AEBP2 regulate PRC2 activity in the presence of H2A ubiquitination or other histone modifications
biophysics more details view paper- Downloaded 2,373 times
- Download rankings, all-time:
- Site-wide: 10,383
- In biophysics: 206
- Year to date:
- Site-wide: 33,985
- Since beginning of last month:
- Site-wide: 45,815
Rapid proteotyping reveals cancer biology and drug response determinants in the NCI-60 cells
systems biology more details view paper- Downloaded 2,030 times
- Download rankings, all-time:
- Site-wide: 13,157
- In systems biology: 212
- Year to date:
- Site-wide: 37,417
- Since beginning of last month:
- Site-wide: 94,067
Insights into autophagosome biogenesis from structural and biochemical analyses of the ATG2A-WIPI4 complex
biochemistry more details view paper- Downloaded 1,851 times
- Download rankings, all-time:
- Site-wide: 15,165
- In biochemistry: 314
- Year to date:
- Site-wide: 174,558
- Since beginning of last month:
- Site-wide: 93,739
Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines
biochemistry more details view paper- Downloaded 1,694 times
- Download rankings, all-time:
- Site-wide: 17,386
- In biochemistry: 380
- Year to date:
- Site-wide: 58,357
- Since beginning of last month:
- Site-wide: 89,632
High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification
biochemistry more details view paper- Downloaded 1,592 times
- Download rankings, all-time:
- Site-wide: 19,194
- In biochemistry: 409
- Year to date:
- Site-wide: 178,959
- Since beginning of last month:
- Site-wide: 144,208
A high density map for navigating the human Polycomb complexome
systems biology more details view paper- Downloaded 1,389 times
- Download rankings, all-time:
- Site-wide: 23,896
- In systems biology: 421
- Year to date:
- Site-wide: 59,897
- Since beginning of last month:
- Site-wide: 43,593
Integration of transcriptome, proteome and phosphoproteome data elucidates the genetic control of molecular networks
systems biology more details view paper- Downloaded 1,384 times
- Download rankings, all-time:
- Site-wide: 24,044
- In systems biology: 428
- Year to date:
- Site-wide: 37,183
- Since beginning of last month:
- Site-wide: 75,056
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry
biochemistry more details view paper- Downloaded 1,336 times
- Download rankings, all-time:
- Site-wide: 25,461
- In biochemistry: 541
- Year to date:
- Site-wide: 163,709
- Since beginning of last month:
- Site-wide: 210,409
SECAT: Quantifying differential protein-protein interaction states by network-centric analysis
systems biology more details view paper- Downloaded 1,128 times
- Download rankings, all-time:
- Site-wide: 33,253
- In systems biology: 608
- Year to date:
- Site-wide: 60,969
- Since beginning of last month:
- Site-wide: 213,017
Convergent network effects along the axis of gene expression during prostate cancer progression
systems biology more details view paper- Downloaded 1,065 times
- Download rankings, all-time:
- Site-wide: 36,257
- In systems biology: 668
- Year to date:
- Site-wide: 155,043
- Since beginning of last month:
- Site-wide: 99,727
System-wide quantitative proteomics of the metabolic syndrome in mice: genotypic and dietary effects
systems biology more details view paper- Downloaded 1,040 times
- Download rankings, all-time:
- Site-wide: 37,617
- In systems biology: 699
- Year to date:
- Site-wide: 107,070
- Since beginning of last month:
- Site-wide: 209,511
Complex-centric proteome profiling by SEC-SWATH-MS
systems biology more details view paper- Downloaded 1,028 times
- Download rankings, all-time:
- Site-wide: 38,282
- In systems biology: 712
- Year to date:
- Site-wide: 166,200
- Since beginning of last month:
- Site-wide: 142,962
Accelerated Protein Biomarker Discovery from FFPE tissue samples using Single-shot, Short Gradient Microflow SWATH MS
cancer biology more details view paper- Downloaded 1,022 times
- Download rankings, all-time:
- Site-wide: 38,634
- In cancer biology: 1,095
- Year to date:
- Site-wide: 31,342
- Since beginning of last month:
- Site-wide: 60,061
PGC1a and Exercise Adaptations in Zebrafish
physiology more details view paper- Downloaded 980 times
- Download rankings, all-time:
- Site-wide: 41,231
- In physiology: 182
- Year to date:
- Site-wide: 79,845
- Since beginning of last month:
- Site-wide: 26,226
Ultra-sensitive proteome profiling of FACS-isolated cell populations by data-independent acquisition-MS: Application to human hematopoietic stem and progenitor cells
systems biology more details view paper- Downloaded 965 times
- Download rankings, all-time:
- Site-wide: 42,238
- In systems biology: 814
- Year to date:
- Site-wide: 145,719
- Since beginning of last month:
- Site-wide: 118,586
DPHL: A pan-human protein mass spectrometry library for robust biomarker discovery using Data-Independent Acquisition and Parallel Reaction Monitoring
bioinformatics more details view paper- Downloaded 963 times
- Download rankings, all-time:
- Site-wide: 42,366
- In bioinformatics: 4,505
- Year to date:
- Site-wide: 62,673
- Since beginning of last month:
- Site-wide: 160,754
Molecular architecture of the human tRNA ligase complex
biochemistry more details view paper- Downloaded 937 times
- Download rankings, all-time:
- Site-wide: 44,240
- In biochemistry: 1,093
- Year to date:
- Site-wide: 118,839
- Since beginning of last month:
- Site-wide: 112,228
Comparative ’omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli
systems biology more details view paper- Downloaded 913 times
- Download rankings, all-time:
- Site-wide: 46,003
- In systems biology: 885
- Year to date:
- Site-wide: 179,557
- Since beginning of last month:
- Site-wide: 94,056
Identification of protein abundance changes in biopsy-level hepatocellular carcinoma tissues using PCT-SWATH
systems biology more details view paper- Downloaded 821 times
- Download rankings, all-time:
- Site-wide: 54,070
- In systems biology: 1,065
- Year to date:
- Site-wide: 106,868
- Since beginning of last month:
- Site-wide: 204,446
Rapid profiling of protein complex re-organization in perturbed systems
systems biology more details view paper- Downloaded 799 times
- Download rankings, all-time:
- Site-wide: 56,351
- In systems biology: 1,141
- Year to date:
- Site-wide: 29,805
- Since beginning of last month:
- Site-wide: 87,010
Systematic protein complex profiling and differential analysis from co-fractionation mass spectrometry data
systems biology more details view paper- Downloaded 778 times
- Download rankings, all-time:
- Site-wide: 58,548
- In systems biology: 1,172
- Year to date:
- Site-wide: 88,861
- Since beginning of last month:
- Site-wide: 77,633
Meiotic Nuclear Pore Complex Remodeling Provides Key Insights into Nuclear Basket Organization
cell biology more details view paper- Downloaded 743 times
- Download rankings, all-time:
- Site-wide: 62,675
- In cell biology: 2,740
- Year to date:
- Site-wide: 40,617
- Since beginning of last month:
- Site-wide: 17,818
Network analysis identifies regulators of lineage-specific phenotypes in Mycobacterium tuberculosis
systems biology more details view paper- Downloaded 734 times
- Download rankings, all-time:
- Site-wide: 63,941
- In systems biology: 1,286
- Year to date:
- Site-wide: 52,404
- Since beginning of last month:
- Site-wide: 212,295
A global screen for assembly state changes of the mitotic proteome by SEC-SWATH-MS
systems biology more details view paper- Downloaded 713 times
- Download rankings, all-time:
- Site-wide: 66,546
- In systems biology: 1,320
- Year to date:
- Site-wide: 177,426
- Since beginning of last month:
- Site-wide: 154,832
Mitochondrial translation and dynamics synergistically extend lifespan in C. elegans through HLH-30
cell biology more details view paper- Downloaded 709 times
- Download rankings, all-time:
- Site-wide: 67,079
- In cell biology: 2,907
- Year to date:
- Site-wide: 185,562
- Since beginning of last month:
- Site-wide: 187,916
The polyQ expansion modulates the configuration and phosphorylation of huntingtin
neuroscience more details view paper- Downloaded 696 times
- Download rankings, all-time:
- Site-wide: 68,930
- In neuroscience: 9,801
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: 154,984
Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers
systems biology more details view paper- Downloaded 686 times
- Download rankings, all-time:
- Site-wide: 70,255
- In systems biology: 1,389
- Year to date:
- Site-wide: 197,568
- Since beginning of last month:
- Site-wide: 210,042
Structural and kinetic analysis of the COP9-Signalosome activation and the cullin-RING ubiquitin ligase deneddylation cycle
biochemistry more details view paper- Downloaded 684 times
- Download rankings, all-time:
- Site-wide: 70,575
- In biochemistry: 1,891
- Year to date:
- Site-wide: 144,925
- Since beginning of last month:
- Site-wide: 204,673
Resource misallocation as a mediator of fitness costs in antibiotic resistance.
microbiology more details view paper- Downloaded 646 times
- Download rankings, all-time:
- Site-wide: 76,305
- In microbiology: 4,674
- Year to date:
- Site-wide: 194,757
- Since beginning of last month:
- Site-wide: 178,342
Arabidopsis Proteome and the Mass Spectral Assay Library
plant biology more details view paper- Downloaded 637 times
- Download rankings, all-time:
- Site-wide: 77,661
- In plant biology: 1,866
- Year to date:
- Site-wide: 196,506
- Since beginning of last month:
- Site-wide: 182,438
Systematic detection of functional proteoform groups from bottom-up proteomic datasets
systems biology more details view paper- Downloaded 629 times
- Download rankings, all-time:
- Site-wide: 78,977
- In systems biology: 1,587
- Year to date:
- Site-wide: 201,874
- Since beginning of last month:
- Site-wide: 170,085
MLL1 minimal catalytic complex is a dynamic conformational ensemble susceptible to pharmacological allosteric disruption
biophysics more details view paper- Downloaded 604 times
- Download rankings, all-time:
- Site-wide: 83,110
- In biophysics: 2,948
- Year to date:
- Site-wide: 107,176
- Since beginning of last month:
- Site-wide: 147,660
Integrative structure investigation on the architecture of human Importin4_histone H3/H4_Asf1a complex and its histone H3 tail binding
biochemistry more details view paper- Downloaded 591 times
- Download rankings, all-time:
- Site-wide: 85,439
- In biochemistry: 2,369
- Year to date:
- Site-wide: 163,668
- Since beginning of last month:
- Site-wide: 76,116
Two parallel pathways implement robust propionate catabolism and detoxification in mycobacteria
systems biology more details view paper- Downloaded 576 times
- Download rankings, all-time:
- Site-wide: 88,272
- In systems biology: 1,819
- Year to date:
- Site-wide: 82,470
- Since beginning of last month:
- Site-wide: 143,204
Breast cancer classification based on proteotypes obtained by SWATH mass spectrometry
cancer biology more details view paper- Downloaded 566 times
- Download rankings, all-time:
- Site-wide: 90,266
- In cancer biology: 2,690
- Year to date:
- Site-wide: 144,108
- Since beginning of last month:
- Site-wide: 145,434
The GTPase Nog1 couples polypeptide exit tunnel quality control with ribosomal stalk assembly
biochemistry more details view paper- Downloaded 536 times
- Download rankings, all-time:
- Site-wide: 96,367
- In biochemistry: 2,711
- Year to date:
- Site-wide: 109,506
- Since beginning of last month:
- Site-wide: 144,970
Integrated multi-omics reveals anaplerotic insufficiency in methylmalonyl-CoA mutase deficiency
pediatrics more details view paper- Downloaded 521 times
- Download rankings, all-time:
- Site-wide: 99,598
- In pediatrics: 208
- Year to date:
- Site-wide: 5,444
- Since beginning of last month:
- Site-wide: 14,113
SWATH-MS co-expression profiles reveal paralogue interference in protein complex evolution
evolutionary biology more details view paper- Downloaded 520 times
- Download rankings, all-time:
- Site-wide: 99,819
- In evolutionary biology: 4,602
- Year to date:
- Site-wide: 79,751
- Since beginning of last month:
- Site-wide: 131,060
Towards a systematic characterization of protein complex function: a natural language processing and machine-learning framework
bioinformatics more details view paper- Downloaded 444 times
- Download rankings, all-time:
- Site-wide: 118,076
- In bioinformatics: 9,872
- Year to date:
- Site-wide: 95,323
- Since beginning of last month:
- Site-wide: 88,118
Mapping specificity, entropy, allosteric changes and substrates in blood proteases by a high-throughput protease screen
biochemistry more details view paper- Downloaded 437 times
- Download rankings, all-time:
- Site-wide: 120,088
- In biochemistry: 3,489
- Year to date:
- Site-wide: 202,311
- Since beginning of last month:
- Site-wide: 188,958
Chemical genetics of AGC-kinases reveals shared targets of Ypk1, Protein Kinase A and Sch9
cell biology more details view paper- Downloaded 432 times
- Download rankings, all-time:
- Site-wide: 121,408
- In cell biology: 5,711
- Year to date:
- Site-wide: 109,294
- Since beginning of last month:
- Site-wide: 100,170
Sensitive detection and structural characterisation of UV-induced cross-links in protein-RNA complexes using CLIR-MS
biochemistry more details view paper- Downloaded 432 times
- Download rankings, all-time:
- Site-wide: 121,414
- In biochemistry: 3,574
- Year to date:
- Site-wide: 75,411
- Since beginning of last month:
- Site-wide: 63,338
Systematic dissection of phosphorylation-dependent YAP1 complex formation elucidates a key role for PTPN14 in Hippo signal integration
systems biology more details view paper- Downloaded 431 times
- Download rankings, all-time:
- Site-wide: 121,465
- In systems biology: 2,588
- Year to date:
- Site-wide: 16,065
- Since beginning of last month:
- Site-wide: 21,310
Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer
cancer biology more details view paper- Downloaded 431 times
- Download rankings, all-time:
- Site-wide: 121,468
- In cancer biology: 3,857
- Year to date:
- Site-wide: 23,373
- Since beginning of last month:
- Site-wide: 7,921
Integrative analysis allows a global and precise identification of functional miRNA target genes in mESCs
systems biology more details view paper- Downloaded 406 times
- Download rankings, all-time:
- Site-wide: 128,620
- In systems biology: 2,625
- Year to date:
- Site-wide: 67,224
- Since beginning of last month:
- Site-wide: 106,513
PHENOTYPIC CHARACTERIZATION OF TWO NOVEL CELL LINE MODELS OF CASTRATION RESISTANT PROSTATE CANCER.
cancer biology more details view paper- Downloaded 389 times
- Download rankings, all-time:
- Site-wide: 133,533
- In cancer biology: 4,069
- Year to date:
- Site-wide: 161,887
- Since beginning of last month:
- Site-wide: 105,421
7q11.23 CNV alters protein synthesis and REST-mediated neuronal intrinsic excitability
neuroscience more details view paper- Downloaded 386 times
- Download rankings, all-time:
- Site-wide: 134,274
- In neuroscience: 21,296
- Year to date:
- Site-wide: 14,404
- Since beginning of last month:
- Site-wide: 11,602
Orthogonal proteomic platforms and their implications for the stable classification of high-grade serous ovarian cancer subtypes
cancer biology more details view paper- Downloaded 345 times
- Download rankings, all-time:
- Site-wide: 146,742
- In cancer biology: 4,482
- Year to date:
- Site-wide: 174,886
- Since beginning of last month:
- Site-wide: 126,738
Novel biochemical, structural and systems insights into inflammatory signaling revealed by contextual interaction proteomics
systems biology more details view paper- Downloaded 334 times
- Download rankings, all-time:
- Site-wide: 150,152
- In systems biology: 3,037
- Year to date:
- Site-wide: 73,297
- Since beginning of last month:
- Site-wide: 137,800
Integrative solution structure of a PTBP1-viral IRES complex reveals strong compaction and ordering with residual conformational flexibility
biochemistry more details view paper- Downloaded 276 times
- Download rankings, all-time:
- Site-wide: 167,636
- In biochemistry: 5,342
- Year to date:
- Site-wide: 18,018
- Since beginning of last month:
- Site-wide: 44,580
All driven by energy demand? Integrative comparison of metabolism of Enterococcus faecalis wildtype and a glutamine synthase mutant
systems biology more details view paper- Downloaded 197 times
- Download rankings, all-time:
- Site-wide: 188,673
- In systems biology: 3,671
- Year to date:
- Site-wide: 129,467
- Since beginning of last month:
- Site-wide: 166,814
Proteomic Dynamics of Breast Cancers Identifies Potential Therapeutic Protein Targets
systems biology more details view paper- Downloaded 183 times
- Download rankings, all-time:
- Site-wide: 191,727
- In systems biology: 3,734
- Year to date:
- Site-wide: 85,365
- Since beginning of last month:
- Site-wide: 132,962
Deep Domain Adversarial Neural Network for the Deconvolution of Cell Type Mixtures in Tissue Proteome Profiling
bioinformatics more details view paper- Downloaded 78 times
- Download rankings, all-time:
- Site-wide: 211,924
- In bioinformatics: None
- Year to date:
- Site-wide: None
- Since beginning of last month:
- Site-wide: None
PanLingua
News
- 27 Nov 2020: The website and API now include results pulled from medRxiv as well as bioRxiv.
- 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
- 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
- 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
- 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
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