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Author: Ruedi Aebersold

Rankings

  • All-time downloads: 43,474 (rank: 3,642 )
  • Categories:
    • biochemistry: 7,500 (rank: 261 )
    • bioinformatics: 4,513 (rank: 2,812 )
    • biophysics: 2,469 (rank: 1,521 (tie) )
    • cancer biology: 1,376 (rank: 5,599 (tie) )
    • cell biology: 957 (rank: 9,715 (tie) )
    • evolutionary biology: 278 (rank: 19,845 (tie) )
    • microbiology: 569 (rank: 25,932 (tie) )
    • neuroscience: 528 (rank: 43,814 (tie) )
    • oncology: 1,463 (rank: 339 (tie) )
    • physiology: 691 (rank: 1,917 (tie) )
    • plant biology: 551 (rank: 8,639 (tie) )
    • systems biology: 22,579 (rank: 135 )

Downloads per author, site-wide

Preprints

Parallel accumulation – serial fragmentation combined with data-independent acquisition (diaPASEF): Bottom-up proteomics with near optimal ion usage

systems biology more details view paper
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    • Site-wide: 2,668
    • In systems biology: 35
  • Year to date:
    • Site-wide: 6,003
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    • Site-wide: 7,329

Automated SWATH Data Analysis Using Targeted Extraction of Ion Chromatograms

bioinformatics more details view paper
  • Downloaded 3,514 times
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    • Site-wide: 3,623
    • In bioinformatics: 353
  • Year to date:
    • Site-wide: 19,251
  • Since beginning of last month:
    • Site-wide: 22,722

Genomic, Proteomic and Phenotypic Heterogeneity in HeLa Cells across Laboratories: Implications for Reproducibility of Research Results

systems biology more details view paper
  • Downloaded 2,717 times
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    • Site-wide: 5,210
    • In systems biology: 84
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    • Site-wide: 15,538
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JARID2 and AEBP2 regulate PRC2 activity in the presence of H2A ubiquitination or other histone modifications

biophysics more details view paper
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    • Site-wide: 8,248
    • In biophysics: 165
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    • Site-wide: 36,140

Rapid proteotyping reveals cancer biology and drug response determinants in the NCI-60 cells

systems biology more details view paper
  • Downloaded 1,787 times
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    • Site-wide: 9,665
    • In systems biology: 178
  • Year to date:
    • Site-wide: 59,143
  • Since beginning of last month:
    • Site-wide: 46,291

Insights into autophagosome biogenesis from structural and biochemical analyses of the ATG2A-WIPI4 complex

biochemistry more details view paper
  • Downloaded 1,667 times
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    • Site-wide: 10,711
    • In biochemistry: 211
  • Year to date:
    • Site-wide: 55,349
  • Since beginning of last month:
    • Site-wide: 79,039

Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

biochemistry more details view paper
  • Downloaded 1,471 times
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    • Site-wide: 12,869
    • In biochemistry: 251
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    • Site-wide: 49,771
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    • Site-wide: 67,129

Protein Classifier for Thyroid Nodules Learned from Rapidly Acquired Proteotypes

oncology more details view paper
  • Downloaded 1,463 times
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    • Site-wide: 12,971
    • In oncology: 17
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    • Site-wide: 8,664
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    • Site-wide: 8,394

Multi-Omic Profiling of the Liver Across Diets and Age in a Diverse Mouse Population

systems biology more details view paper
  • Downloaded 1,390 times
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    • Site-wide: 14,057
    • In systems biology: 259
  • Year to date:
    • Site-wide: 5,158
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    • Site-wide: 10,328

High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification

biochemistry more details view paper
  • Downloaded 1,389 times
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    • Site-wide: 14,059
    • In biochemistry: 282
  • Year to date:
    • Site-wide: 46,810
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    • Site-wide: 56,384

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

biochemistry more details view paper
  • Downloaded 1,242 times
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    • Site-wide: 16,611
    • In biochemistry: 341
  • Year to date:
    • Site-wide: 64,605
  • Since beginning of last month:
    • Site-wide: 77,119

A high density map for navigating the human Polycomb complexome

systems biology more details view paper
  • Downloaded 1,237 times
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    • Site-wide: 16,735
    • In systems biology: 326
  • Year to date:
    • Site-wide: 69,666
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    • Site-wide: 66,801

SECAT: Quantifying differential protein-protein interaction states by network-centric analysis

systems biology more details view paper
  • Downloaded 997 times
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    • Site-wide: 22,953
    • In systems biology: 459
  • Year to date:
    • Site-wide: 38,830
  • Since beginning of last month:
    • Site-wide: 61,413

Integration of transcriptome, proteome and phosphoproteome data elucidates the genetic control of molecular networks

systems biology more details view paper
  • Downloaded 970 times
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    • Site-wide: 23,936
    • In systems biology: 481
  • Year to date:
    • Site-wide: 17,745
  • Since beginning of last month:
    • Site-wide: 14,816

System-wide quantitative proteomics of the metabolic syndrome in mice: genotypic and dietary effects

systems biology more details view paper
  • Downloaded 948 times
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    • Site-wide: 24,784
    • In systems biology: 500
  • Year to date:
    • Site-wide: 89,287
  • Since beginning of last month:
    • Site-wide: 113,351

Principles of gene regulation quantitatively connect DNA to RNA and proteins in bacteria

systems biology more details view paper
  • Downloaded 911 times
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    • Site-wide: 26,174
    • In systems biology: 532
  • Year to date:
    • Site-wide: 2,491
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    • Site-wide: 413

Convergent network effects along the axis of gene expression during prostate cancer progression

systems biology more details view paper
  • Downloaded 902 times
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    • Site-wide: 26,530
    • In systems biology: 540
  • Year to date:
    • Site-wide: 37,982
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    • Site-wide: 26,156

Complex-centric proteome profiling by SEC-SWATH-MS

systems biology more details view paper
  • Downloaded 876 times
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    • Site-wide: 27,620
    • In systems biology: 576
  • Year to date:
    • Site-wide: 99,712
  • Since beginning of last month:
    • Site-wide: 78,862

Ultra-sensitive proteome profiling of FACS-isolated cell populations by data-independent acquisition-MS: Application to human hematopoietic stem and progenitor cells

systems biology more details view paper
  • Downloaded 818 times
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    • Site-wide: 30,472
    • In systems biology: 648
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    • Site-wide: 65,908
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    • Site-wide: 73,316

DPHL: A pan-human protein mass spectrometry library for robust biomarker discovery using Data-Independent Acquisition and Parallel Reaction Monitoring

bioinformatics more details view paper
  • Downloaded 810 times
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    • Site-wide: 30,886
    • In bioinformatics: 3,465
  • Year to date:
    • Site-wide: 77,977
  • Since beginning of last month:
    • Site-wide: 102,707

Comparative ’omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli

systems biology more details view paper
  • Downloaded 758 times
  • Download rankings, all-time:
    • Site-wide: 33,845
    • In systems biology: 732
  • Year to date:
    • Site-wide: 68,519
  • Since beginning of last month:
    • Site-wide: 46,616

PGC1a and Exercise Adaptations in Zebrafish

physiology more details view paper
  • Downloaded 691 times
  • Download rankings, all-time:
    • Site-wide: 38,472
    • In physiology: 185
  • Year to date:
    • Site-wide: 51,201
  • Since beginning of last month:
    • Site-wide: 36,884

Identification of protein abundance changes in biopsy-level hepatocellular carcinoma tissues using PCT-SWATH

systems biology more details view paper
  • Downloaded 679 times
  • Download rankings, all-time:
    • Site-wide: 39,340
    • In systems biology: 869
  • Year to date:
    • Site-wide: 76,329
  • Since beginning of last month:
    • Site-wide: 78,875

A global screen for assembly state changes of the mitotic proteome by SEC-SWATH-MS

systems biology more details view paper
  • Downloaded 642 times
  • Download rankings, all-time:
    • Site-wide: 42,267
    • In systems biology: 937
  • Year to date:
    • Site-wide: 104,222
  • Since beginning of last month:
    • Site-wide: 107,080

Accelerated Protein Biomarker Discovery from FFPE tissue samples using Single-shot, Short Gradient Microflow SWATH MS

cancer biology more details view paper
  • Downloaded 637 times
  • Download rankings, all-time:
    • Site-wide: 42,707
    • In cancer biology: 1,162
  • Year to date:
    • Site-wide: 42,447
  • Since beginning of last month:
    • Site-wide: 41,144

Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers

systems biology more details view paper
  • Downloaded 617 times
  • Download rankings, all-time:
    • Site-wide: 44,408
    • In systems biology: 998
  • Year to date:
    • Site-wide: 98,132
  • Since beginning of last month:
    • Site-wide: 130,734

Mitochondrial translation and dynamics synergistically extend lifespan in C. elegans through HLH-30

cell biology more details view paper
  • Downloaded 612 times
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    • Site-wide: 44,933
    • In cell biology: 1,877
  • Year to date:
    • Site-wide: 90,285
  • Since beginning of last month:
    • Site-wide: 103,032

Structural and kinetic analysis of the COP9-Signalosome activation and the cullin-RING ubiquitin ligase deneddylation cycle

biochemistry more details view paper
  • Downloaded 597 times
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    • Site-wide: 46,266
    • In biochemistry: 1,184
  • Year to date:
    • Site-wide: 122,007
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    • Site-wide: 92,582

Systematic protein complex profiling and differential analysis from co-fractionation mass spectrometry data

systems biology more details view paper
  • Downloaded 591 times
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    • Site-wide: 46,931
    • In systems biology: 1,058
  • Year to date:
    • Site-wide: 27,223
  • Since beginning of last month:
    • Site-wide: 45,042

Resource misallocation as a mediator of fitness costs in antibiotic resistance.

microbiology more details view paper
  • Downloaded 569 times
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    • Site-wide: 49,150
    • In microbiology: 3,069
  • Year to date:
    • Site-wide: 78,575
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    • Site-wide: 57,637

Arabidopsis Proteome and the Mass Spectral Assay Library

plant biology more details view paper
  • Downloaded 551 times
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    • Site-wide: 51,059
    • In plant biology: 1,201
  • Year to date:
    • Site-wide: 137,541
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    • Site-wide: 133,271

The polyQ expansion modulates the configuration and phosphorylation of huntingtin

neuroscience more details view paper
  • Downloaded 528 times
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    • Site-wide: 53,679
    • In neuroscience: 7,800
  • Year to date:
    • Site-wide: 53,706
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    • Site-wide: 56,233

Network analysis identifies regulators of lineage-specific phenotypes in Mycobacterium tuberculosis

systems biology more details view paper
  • Downloaded 516 times
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    • Site-wide: 55,224
    • In systems biology: 1,275
  • Year to date:
    • Site-wide: 54,389
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    • Site-wide: 40,479

MLL1 minimal catalytic complex is a dynamic conformational ensemble susceptible to pharmacological allosteric disruption

biophysics more details view paper
  • Downloaded 484 times
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    • Site-wide: 59,428
    • In biophysics: 2,061
  • Year to date:
    • Site-wide: 126,432
  • Since beginning of last month:
    • Site-wide: 137,014

Breast cancer classification based on proteotypes obtained by SWATH mass spectrometry

cancer biology more details view paper
  • Downloaded 477 times
  • Download rankings, all-time:
    • Site-wide: 60,306
    • In cancer biology: 1,715
  • Year to date:
    • Site-wide: 110,955
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    • Site-wide: 126,039

Systematic detection of functional proteoform groups from bottom-up proteomic datasets

systems biology more details view paper
  • Downloaded 447 times
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    • Site-wide: 64,707
    • In systems biology: 1,518
  • Year to date:
    • Site-wide: 9,975
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    • Site-wide: 9,924

Two parallel pathways implement robust propionate catabolism and detoxification in mycobacteria

systems biology more details view paper
  • Downloaded 445 times
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    • Site-wide: 64,948
    • In systems biology: 1,529
  • Year to date:
    • Site-wide: 89,447
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    • Site-wide: 79,829

The GTPase Nog1 couples polypeptide exit tunnel quality control with ribosomal stalk assembly

biochemistry more details view paper
  • Downloaded 441 times
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    • Site-wide: 65,564
    • In biochemistry: 1,774
  • Year to date:
    • Site-wide: 120,112
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    • Site-wide: 134,512

Integrative structure investigation on the architecture of human Importin4_histone H3/H4_Asf1a complex and its histone H3 tail binding

biochemistry more details view paper
  • Downloaded 394 times
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    • Site-wide: 73,390
    • In biochemistry: 2,029
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    • Site-wide: 100,031
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Chemical genetics of AGC-kinases reveals shared targets of Ypk1, Protein Kinase A and Sch9

cell biology more details view paper
  • Downloaded 345 times
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    • Site-wide: 82,428
    • In cell biology: 3,805
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    • Site-wide: 84,461
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Mapping specificity, entropy, allosteric changes and substrates in blood proteases by a high-throughput protease screen

biochemistry more details view paper
  • Downloaded 299 times
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    • Site-wide: 92,145
    • In biochemistry: 2,673
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    • Site-wide: 57,891
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SWATH-MS co-expression profiles reveal paralogue interference in protein complex evolution

evolutionary biology more details view paper
  • Downloaded 278 times
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    • Site-wide: 96,897
    • In evolutionary biology: 5,059
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Orthogonal proteomic platforms and their implications for the stable classification of high-grade serous ovarian cancer subtypes

cancer biology more details view paper
  • Downloaded 262 times
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    • Site-wide: 100,360
    • In cancer biology: 3,035
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    • Site-wide: 103,488

Towards a systematic characterization of protein complex function: a natural language processing and machine-learning framework

bioinformatics more details view paper
  • Downloaded 189 times
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    • Site-wide: 117,808
    • In bioinformatics: 9,620
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