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Author: Fabian J. Theis

  • Most recently observed institution: Institute of Computational Biology, Helmholtz Center Munich, Germany.

Rankings

  • All-time downloads: 23,010 (rank: 1,926 out of 359,817)
  • Categories:
    • bioinformatics: 18,352 (rank: 130 out of 31,149)
    • cell biology: 155 (rank: 23,631 (tie) out of 26,367)
    • systems biology: 4,503 (rank: 522 out of 10,774)

Downloads per author, site-wide

Preprints

Single cell RNA-seq denoising using a deep count autoencoder

bioinformatics more details view paper
  • Downloaded 5,706 times
  • Download rankings, all-time:
    • Site-wide: 531 out of 83,488
    • In bioinformatics: 90 out of 8,009
  • Year to date:
    • Site-wide: 9,552 out of 83,488
  • Since beginning of last month:
    • Site-wide: 8,954 out of 83,488

Generative modeling and latent space arithmetics predict single-cell perturbation response across cell types, studies and species

bioinformatics more details view paper
  • Downloaded 5,206 times
  • Download rankings, all-time:
    • Site-wide: 617 out of 83,488
    • In bioinformatics: 106 out of 8,009
  • Year to date:
    • Site-wide: 2,358 out of 83,488
  • Since beginning of last month:
    • Site-wide: 3,345 out of 83,488

DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning

systems biology more details view paper
  • Downloaded 4,108 times
  • Download rankings, all-time:
    • Site-wide: 966 out of 83,488
    • In systems biology: 24 out of 2,211
  • Year to date:
    • Site-wide: 13,545 out of 83,488
  • Since beginning of last month:
    • Site-wide: 20,176 out of 83,488

Diffusion pseudotime robustly reconstructs lineage branching

bioinformatics more details view paper
  • Downloaded 3,633 times
  • Download rankings, all-time:
    • Site-wide: 1,203 out of 83,488
    • In bioinformatics: 215 out of 8,009
  • Year to date:
    • Site-wide: 5,335 out of 83,488
  • Since beginning of last month:
    • Site-wide: 6,573 out of 83,488

destiny – diffusion maps for large-scale single-cell data in R

bioinformatics more details view paper
  • Downloaded 2,141 times
  • Download rankings, all-time:
    • Site-wide: 2,993 out of 83,488
    • In bioinformatics: 557 out of 8,009
  • Year to date:
    • Site-wide: 27,738 out of 83,488
  • Since beginning of last month:
    • Site-wide: 20,880 out of 83,488

epiScanpy: integrated single-cell epigenomic analysis

bioinformatics more details view paper
  • Downloaded 1,278 times
  • Download rankings, all-time:
    • Site-wide: 7,083 out of 83,488
    • In bioinformatics: 1,269 out of 8,009
  • Year to date:
    • Site-wide: 9,435 out of 83,488
  • Since beginning of last month:
    • Site-wide: 8,310 out of 83,488

Scalable parameter estimation for genome-scale biochemical reaction networks

systems biology more details view paper
  • Downloaded 395 times
  • Download rankings, all-time:
    • Site-wide: 38,021 out of 83,488
    • In systems biology: 1,123 out of 2,211
  • Year to date:
    • Site-wide: 80,404 out of 83,488
  • Since beginning of last month:
    • Site-wide: 76,245 out of 83,488

Design and power analysis for multi-sample single cell genomics experiments

bioinformatics more details view paper
  • Downloaded 388 times
  • Download rankings, all-time:
    • Site-wide: 38,737 out of 83,488
    • In bioinformatics: 4,727 out of 8,009
  • Year to date:
    • Site-wide: 3,738 out of 83,488
  • Since beginning of last month:
    • Site-wide: 1,171 out of 83,488

In vivo identification of apoptotic and extracellular vesicle-bound live cells using image-based deep learning

cell biology more details view paper
  • Downloaded 155 times
  • Download rankings, all-time:
    • Site-wide: 71,965 out of 83,488
    • In cell biology: 3,638 out of 4,241
  • Year to date:
    • Site-wide: 15,464 out of 83,488
  • Since beginning of last month:
    • Site-wide: 3,813 out of 83,488

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