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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 65,445 bioRxiv papers from 289,895 authors.

Author: Ying Zhang

Rankings

  • All-time downloads: 30,263 (rank: 598 out of 289,895)
  • Categories:
    • biochemistry: 245 (rank: 7,249 (tie) out of 11,247)
    • bioinformatics: 813 (rank: 9,526 (tie) out of 25,248)
    • biophysics: 977 (rank: 1,764 (tie) out of 11,356)
    • cell biology: 493 (rank: 7,166 (tie) out of 19,421)
    • developmental biology: 256 (rank: 7,148 (tie) out of 10,848)
    • epidemiology: 342 (rank: 3,791 (tie) out of 9,549)
    • genetics: 755 (rank: 12,202 (tie) out of 28,773)
    • genomics: 11,420 (rank: 869 out of 32,972)
    • microbiology: 12,334 (rank: 31 out of 29,771)
    • molecular biology: 1,560 (rank: 1,058 out of 13,684)
    • neuroscience: 622 (rank: 16,559 (tie) out of 48,292)
    • systems biology: 446 (rank: 4,475 (tie) out of 8,800)

Downloads per author, site-wide

Preprints

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,091 times
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    • Site-wide: 635 out of 65,445
    • In genomics: 165 out of 4,464
  • Year to date:
    • Site-wide: 10,007 out of 65,445
  • Since beginning of last month:
    • Site-wide: 13,358 out of 65,445

De novo assembly and phasing of dikaryotic genomes from two isolates of Puccinia coronata f. sp. avenae, the causal agent of oat crown rust

genomics more details view paper
  • Downloaded 2,958 times
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    • In genomics: 276 out of 4,464
  • Year to date:
    • Site-wide: 1,883 out of 65,445
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    • Site-wide: 710 out of 65,445

High Activity Of Selective Essential Oils Against Stationary Phase Borrelia burgdorferi As A Persister Model

microbiology more details view paper
  • Downloaded 2,756 times
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    • Site-wide: 1,333 out of 65,445
    • In microbiology: 27 out of 5,265
  • Year to date:
    • Site-wide: 10,632 out of 65,445
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    • Site-wide: 17,667 out of 65,445

Evaluation of Natural and Botanical Medicines for Activity against Growing and Non-growing Forms of B. burgdorferi

microbiology more details view paper
  • Downloaded 2,474 times
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    • In microbiology: 33 out of 5,265
  • Year to date:
    • Site-wide: 302 out of 65,445
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    • Site-wide: 1,454 out of 65,445

Genome-wide characterization of PRE-1 reveals a hidden evolutionary relationship between suidae and primates

genomics more details view paper
  • Downloaded 2,029 times
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    • In genomics: 485 out of 4,464
  • Year to date:
    • Site-wide: 21,532 out of 65,445
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    • Site-wide: 22,875 out of 65,445

Template switching causes artificial junction formation and false identification of circular RNAs

molecular biology more details view paper
  • Downloaded 1,257 times
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    • Site-wide: 5,123 out of 65,445
    • In molecular biology: 159 out of 2,076
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    • Site-wide: 8,067 out of 65,445

Additional Essential Oils with High Activity against Stationary Phase Borrelia burgdorferi

microbiology more details view paper
  • Downloaded 1,249 times
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    • Site-wide: 5,181 out of 65,445
    • In microbiology: 183 out of 5,265
  • Year to date:
    • Site-wide: 8,266 out of 65,445
  • Since beginning of last month:
    • Site-wide: 10,016 out of 65,445

Biofilm/Persister/Stationary Phase Bacteria Cause More Severe Disease Than Log Phase Bacteria I Biofilm Borrelia burgdorferi Not Only Display More Tolerance to Lyme Antibiotics But Also Cause More Severe Pathology In a Mouse Arthritis Model: Implications for Understanding Persistence, PTLDS and Treatment Failure

microbiology more details view paper
  • Downloaded 994 times
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    • Site-wide: 7,541 out of 65,445
    • In microbiology: 312 out of 5,265
  • Year to date:
    • Site-wide: 2,796 out of 65,445
  • Since beginning of last month:
    • Site-wide: 10,907 out of 65,445

Discovering in vivo cytokine eQTL interactions from a lupus clinical trial

genomics more details view paper
  • Downloaded 938 times
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    • Site-wide: 8,308 out of 65,445
    • In genomics: 1,292 out of 4,464
  • Year to date:
    • Site-wide: 38,064 out of 65,445
  • Since beginning of last month:
    • Site-wide: 25,861 out of 65,445

Local and global chromatin interactions are altered by large genomic deletions associated with human brain development

genetics more details view paper
  • Downloaded 755 times
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    • Site-wide: 11,552 out of 65,445
    • In genetics: 818 out of 3,699
  • Year to date:
    • Site-wide: 41,271 out of 65,445
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    • Site-wide: 45,237 out of 65,445

The Genome of the Zebra Mussel, Dreissena polymorpha: A Resource for Invasive Species Research

genomics more details view paper
  • Downloaded 719 times
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    • In genomics: 1,722 out of 4,464
  • Year to date:
    • Site-wide: 3,138 out of 65,445
  • Since beginning of last month:
    • Site-wide: 5,136 out of 65,445

H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions

genomics more details view paper
  • Downloaded 685 times
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    • In genomics: 1,817 out of 4,464
  • Year to date:
    • Site-wide: 3,443 out of 65,445
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    • Site-wide: 4,816 out of 65,445

Mutations in efflux pump Rv1258c (Tap) cause resistance to pyrazinamide and other drugs in M. tuberculosis

microbiology more details view paper
  • Downloaded 587 times
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    • In microbiology: 843 out of 5,265
  • Year to date:
    • Site-wide: 17,213 out of 65,445
  • Since beginning of last month:
    • Site-wide: 36,149 out of 65,445

High-throughput single-particle tracking reveals nested membrane nanodomain organization that dictates Ras diffusion and trafficking

biophysics more details view paper
  • Downloaded 518 times
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    • Site-wide: 19,491 out of 65,445
    • In biophysics: 685 out of 2,761
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    • Site-wide: 5,505 out of 65,445
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    • Site-wide: 19,302 out of 65,445

Activity of Sulfa Drugs and Their Combinations against Stationary Phase B. burgdorferi in vitro

microbiology more details view paper
  • Downloaded 468 times
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    • In microbiology: 1,202 out of 5,265
  • Year to date:
    • Site-wide: 60,322 out of 65,445
  • Since beginning of last month:
    • Site-wide: 53,849 out of 65,445

The Influence of Molecular Reach and Diffusivity on the Efficacy of Membrane-Confined Reactions

biophysics more details view paper
  • Downloaded 459 times
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    • In biophysics: 833 out of 2,761
  • Year to date:
    • Site-wide: 10,634 out of 65,445
  • Since beginning of last month:
    • Site-wide: 10,768 out of 65,445

An Array of 60,000 Antibodies for Proteome-Scale Antibody Generation and Target Discovery

systems biology more details view paper
  • Downloaded 446 times
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    • Site-wide: 23,314 out of 65,445
    • In systems biology: 708 out of 1,836
  • Year to date:
    • Site-wide: 7,032 out of 65,445
  • Since beginning of last month:
    • Site-wide: 19,156 out of 65,445

Biofilm/Persister/Stationary Phase Bacteria Cause More Severe Disease Than Log Phase Bacteria II Infection with Persister Forms of Staphylococcus aureus Causes a Chronic Persistent Skin Infection with More Severe Lesion that Takes Longer to Heal and is not Eradicated by the Current Recommended Treatment in Mice

microbiology more details view paper
  • Downloaded 440 times
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    • Site-wide: 23,655 out of 65,445
    • In microbiology: 1,311 out of 5,265
  • Year to date:
    • Site-wide: 11,120 out of 65,445
  • Since beginning of last month:
    • Site-wide: 21,489 out of 65,445

Predicting chromatin interactions between open chromatin regions from DNA sequences

bioinformatics more details view paper
  • Downloaded 394 times
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    • Site-wide: 26,762 out of 65,445
    • In bioinformatics: 3,614 out of 6,491
  • Year to date:
    • Site-wide: 8,665 out of 65,445
  • Since beginning of last month:
    • Site-wide: 8,248 out of 65,445

Identification of a Novel Gene argJ involved in Arginine Biosynthesis Critical for Persister Formation in Staphylococcus aureus

microbiology more details view paper
  • Downloaded 332 times
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    • Site-wide: 31,888 out of 65,445
    • In microbiology: 1,978 out of 5,265
  • Year to date:
    • Site-wide: 44,210 out of 65,445
  • Since beginning of last month:
    • Site-wide: 43,820 out of 65,445

Identification of disease resistance genes from a Chinese wild grapevine (Vitis davidii) by analysing grape transcriptomes and transgenic Arabidopsis

molecular biology more details view paper
  • Downloaded 303 times
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    • Site-wide: 34,669 out of 65,445
    • In molecular biology: 1,008 out of 2,076
  • Year to date:
    • Site-wide: 60,413 out of 65,445
  • Since beginning of last month:
    • Site-wide: 55,684 out of 65,445

Cyclin B3 is specifically required for metaphase to anaphase transition in mouse oocyte meiosis I

cell biology more details view paper
  • Downloaded 299 times
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    • Site-wide: 35,031 out of 65,445
    • In cell biology: 1,671 out of 3,154
  • Year to date:
    • Site-wide: 30,970 out of 65,445
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    • Site-wide: 49,538 out of 65,445

Identification of drug candidates that enhance pyrazinamide activity from a clinical drug library

microbiology more details view paper
  • Downloaded 259 times
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    • Site-wide: 39,259 out of 65,445
    • In microbiology: 2,595 out of 5,265
  • Year to date:
    • Site-wide: 56,636 out of 65,445
  • Since beginning of last month:
    • Site-wide: 55,948 out of 65,445

Clofazimine targets essential nucleoid associated protein, mycobacterial integration host factor (mIHF), in Mycobacterium tuberculosis

microbiology more details view paper
  • Downloaded 257 times
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    • Site-wide: 39,454 out of 65,445
    • In microbiology: 2,618 out of 5,265
  • Year to date:
    • Site-wide: 49,178 out of 65,445
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    • Site-wide: 42,559 out of 65,445

Specific miRNA-GPCR networks regulate Sox9a/Sox9b activities to promote gonadal renewal in zebrafish

developmental biology more details view paper
  • Downloaded 256 times
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    • In developmental biology: 1,183 out of 1,937
  • Year to date:
    • Site-wide: 35,858 out of 65,445
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    • Site-wide: 37,900 out of 65,445

ErbB4 deletion in noradrenergic neurons in the locus coeruleus induces mania-like behavior via elevated catecholamines

neuroscience more details view paper
  • Downloaded 244 times
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    • Site-wide: 41,036 out of 65,445
    • In neuroscience: 7,186 out of 11,734
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    • Site-wide: 51,662 out of 65,445
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    • Site-wide: 51,898 out of 65,445

A comprehensive plasma metabolomics dataset for a cohort of mouse knockouts within the international mouse phenotyping consortium

bioinformatics more details view paper
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    • In bioinformatics: 4,888 out of 6,491
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    • Site-wide: 18,656 out of 65,445
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    • Site-wide: 20,591 out of 65,445

Identification of small regulatory RNAs involved in persister formation

microbiology more details view paper
  • Downloaded 226 times
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    • Site-wide: 43,310 out of 65,445
    • In microbiology: 2,925 out of 5,265
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    • Site-wide: 40,909 out of 65,445
  • Since beginning of last month:
    • Site-wide: 44,500 out of 65,445

Identification of novel mutations associated with clofazimine resistance in Mycobacterium abscessus

microbiology more details view paper
  • Downloaded 225 times
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    • Site-wide: 43,397 out of 65,445
    • In microbiology: 2,939 out of 5,265
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    • Site-wide: 44,876 out of 65,445
  • Since beginning of last month:
    • Site-wide: 46,288 out of 65,445

Varying Effects of Common Tuberculosis Drugs on Enhancing Clofazimine Activity in vitro

microbiology more details view paper
  • Downloaded 224 times
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    • Site-wide: 43,526 out of 65,445
    • In microbiology: 2,950 out of 5,265
  • Year to date:
    • Site-wide: 61,599 out of 65,445
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    • Site-wide: 61,329 out of 65,445

Modeling the relative role of human mobility, land-use and climate factors on dengue outbreak emergence in Sri Lanka

epidemiology more details view paper
  • Downloaded 224 times
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    • In epidemiology: 803 out of 1,556
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    • Site-wide: 28,773 out of 65,445
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    • Site-wide: 21,214 out of 65,445

Identification of Genes Regulating Cell Death in Staphylococcus aureus

microbiology more details view paper
  • Downloaded 216 times
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    • Site-wide: 44,553 out of 65,445
    • In microbiology: 3,045 out of 5,265
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    • Site-wide: 33,270 out of 65,445

Variation in genome content and predatory phenotypes between Bdellovibrio sp. NC01 isolated from soil and B. bacteriovorus type strain HD100

microbiology more details view paper
  • Downloaded 213 times
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    • In microbiology: 3,080 out of 5,265
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    • Site-wide: 21,463 out of 65,445
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    • Site-wide: 22,268 out of 65,445

Spinal V3 interneurons and left-right coordination in mammalian locomotion

neuroscience more details view paper
  • Downloaded 204 times
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    • In neuroscience: 8,126 out of 11,734
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    • Site-wide: 27,951 out of 65,445

Identification of Polynucleotide Phosphorylase (PNPase) in Escherichia coli Involved in Persister Formation

microbiology more details view paper
  • Downloaded 201 times
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    • Site-wide: 46,501 out of 65,445
    • In microbiology: 3,242 out of 5,265
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    • Site-wide: 44,504 out of 65,445

Proteomic Analyses of Morphological Variants of Borrelia burgdorferi Shed New Light on Persistence Mechanisms: Implications for Pathogenesis, Diagnosis and Treatment

microbiology more details view paper
  • Downloaded 195 times
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    • In microbiology: 3,324 out of 5,265
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    • Site-wide: 27,548 out of 65,445
  • Since beginning of last month:
    • Site-wide: 33,212 out of 65,445

UNC-45A is preferentially expressed in epithelial cells and binds to and co-localizes with interphase MTs

cell biology more details view paper
  • Downloaded 194 times
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    • In cell biology: 2,320 out of 3,154
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    • Site-wide: 24,071 out of 65,445
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    • Site-wide: 47,472 out of 65,445

Development of a novel signature of long noncoding RNAs as a prognostic biomarker for esophageal cancer

bioinformatics more details view paper
  • Downloaded 182 times
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    • Site-wide: 49,111 out of 65,445
    • In bioinformatics: 5,405 out of 6,491
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    • Site-wide: 51,453 out of 65,445

A dynamic role for dopamine receptors in the control of mammalian spinal networks

neuroscience more details view paper
  • Downloaded 174 times
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    • Site-wide: 50,130 out of 65,445
    • In neuroscience: 8,880 out of 11,734
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    • Site-wide: 27,270 out of 65,445
  • Since beginning of last month:
    • Site-wide: 16,870 out of 65,445

Identification of novel genes including rpmF and yjjQ critical for Type II persister formation in Escherichia coli

microbiology more details view paper
  • Downloaded 173 times
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    • Site-wide: 50,303 out of 65,445
    • In microbiology: 3,609 out of 5,265
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    • Site-wide: 54,752 out of 65,445
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    • Site-wide: 48,973 out of 65,445

Identification of essential oils with activity against stationary phase Staphylococcus aureus

microbiology more details view paper
  • Downloaded 165 times
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    • Site-wide: 51,513 out of 65,445
    • In microbiology: 3,731 out of 5,265
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    • Site-wide: 29,122 out of 65,445
  • Since beginning of last month:
    • Site-wide: 6,884 out of 65,445

Introducing RpsA Point Mutation Δ438A or D123A into the Chromosome of M. tuberculosis Confirms its Role in Causing Resistance to Pyrazinamide

microbiology more details view paper
  • Downloaded 159 times
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    • In microbiology: 3,822 out of 5,265
  • Year to date:
    • Site-wide: 30,129 out of 65,445
  • Since beginning of last month:
    • Site-wide: 54,176 out of 65,445

A Drug Combination Approach Targeting Both Growing Bacteria and Dormant Persisters Eradicate Persistent Staphylococcus aureus Biofilm Infection

microbiology more details view paper
  • Downloaded 145 times
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    • Site-wide: 54,353 out of 65,445
    • In microbiology: 4,006 out of 5,265
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    • Site-wide: 33,194 out of 65,445
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    • Site-wide: 24,847 out of 65,445

Identification of essential oils with strong activity against stationary phase uropathogenic Escherichia coli

microbiology more details view paper
  • Downloaded 144 times
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    • Site-wide: 54,431 out of 65,445
    • In microbiology: 4,021 out of 5,265
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    • Site-wide: 33,324 out of 65,445
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    • Site-wide: 8,878 out of 65,445

Identification of novel mutations in LprG (rv1411c), rv0521, rv3630, rv0010c, ppsC, cyp128 associated with pyrazinoic acid/pyrazinamide resistance in Mycobacterium tuberculosis

microbiology more details view paper
  • Downloaded 140 times
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    • In microbiology: 4,078 out of 5,265
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    • Site-wide: 62,679 out of 65,445
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    • Site-wide: 51,009 out of 65,445

Integrative Modeling of a Sin3/HDAC Complex Sub-structure

biochemistry more details view paper
  • Downloaded 129 times
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    • In biochemistry: 1,628 out of 1,922
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  • Since beginning of last month:
    • Site-wide: 2,874 out of 65,445

Identifying the diagnostic value of microRNA-421 in gastric cancer patients: a meta-analysis

epidemiology more details view paper
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    • In epidemiology: 1,346 out of 1,556
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    • Site-wide: 60,083 out of 65,445

The circulating lipidome is largely defined by sex descriptors in the GOLDN, GeneBank and the ADNI studies

biochemistry more details view paper
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    • Site-wide: 24,334 out of 65,445

Ranking of Major Classes of Antibiotics for Activity against Stationary Phase Pseudomonas aeruginosa and Identification of Clinafloxacin + Cefuroxime + Gentamicin Drug Combination that Eradicates Persistent P. aeruginosa Infection in a Murine Cystic Fibrosis Model

microbiology more details view paper
  • Downloaded 92 times
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    • In microbiology: 4,732 out of 5,265
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