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Author: Uwe Ohler

  • ORCiD: http://orcid.org/0000-0002-0881-3116
  • Most recently observed institution: Computational Regulatory Genomics, Humboldt-University Berlin / Max Delbrück Centre for Molecular Medicine

Rankings

  • All-time downloads: 18,685 (rank: 2,823 out of 364,063)
  • Categories:
    • bioinformatics: 4,909 (rank: 1,783 out of 31,499)
    • cancer biology: 1,652 (rank: 2,136 (tie) out of 24,739)
    • genomics: 6,131 (rank: 2,555 out of 39,231)
    • molecular biology: 5,282 (rank: 288 out of 18,582)
    • plant biology: 225 (rank: 10,432 (tie) out of 13,780)
    • systems biology: 486 (rank: 5,779 (tie) out of 10,828)

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Preprints

Purification of Cross-linked RNA-Protein Complexes by Phenol-Toluol Extraction

molecular biology more details view paper
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    • In molecular biology: 27 out of 2,843
  • Year to date:
    • Site-wide: 8,573 out of 84,588
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    • Site-wide: 12,829 out of 84,588

Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets via protocol-specific bias modeling

genomics more details view paper
  • Downloaded 1,887 times
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    • In genomics: 675 out of 5,461
  • Year to date:
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    • Site-wide: 31,655 out of 84,588

Integrated Proteogenomic Deep Sequencing and Analytics Accurately Identify Non-Canonical Peptides in Tumor Immunopeptidomes

cancer biology more details view paper
  • Downloaded 1,652 times
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    • In cancer biology: 114 out of 2,962
  • Year to date:
    • Site-wide: 7,681 out of 84,588
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    • Site-wide: 19,571 out of 84,588

Deep neural networks for interpreting RNA binding protein target preferences

bioinformatics more details view paper
  • Downloaded 1,329 times
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    • In bioinformatics: 1,206 out of 8,113
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    • Site-wide: 8,339 out of 84,588
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    • Site-wide: 10,683 out of 84,588

A spectral analysis approach to detect actively translated open reading frames in high-resolution ribosome profiling data

genomics more details view paper
  • Downloaded 1,184 times
  • Download rankings, all-time:
    • Site-wide: 8,162 out of 84,588
    • In genomics: 1,245 out of 5,461
  • Year to date:
    • Site-wide: 52,223 out of 84,588
  • Since beginning of last month:
    • Site-wide: 36,097 out of 84,588

Integrative classification of human coding and non-coding genes based on RNA metabolism profiles

genomics more details view paper
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    • Site-wide: 9,629 out of 84,588
    • In genomics: 1,431 out of 5,461
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    • Site-wide: 58,546 out of 84,588
  • Since beginning of last month:
    • Site-wide: 41,648 out of 84,588

Deciphering human ribonucleoprotein regulatory networks

genomics more details view paper
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    • In genomics: 1,434 out of 5,461
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    • Site-wide: 48,786 out of 84,588

Quantification of translation uncovers the functions of the alternative transcriptome

genomics more details view paper
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    • In genomics: 1,690 out of 5,461
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    • Site-wide: 5,581 out of 84,588

Janggu - Deep learning for genomics

bioinformatics more details view paper
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    • In bioinformatics: 2,156 out of 8,113
  • Year to date:
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  • Since beginning of last month:
    • Site-wide: 29,000 out of 84,588

Ribo-seQC: comprehensive analysis of cytoplasmic and organellar ribosome profiling data

bioinformatics more details view paper
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    • Site-wide: 16,462 out of 84,588
    • In bioinformatics: 2,524 out of 8,113
  • Year to date:
    • Site-wide: 20,633 out of 84,588
  • Since beginning of last month:
    • Site-wide: 32,942 out of 84,588

omniCLIP: Bayesian identification of protein-RNA interactions from CLIP-Seq data

bioinformatics more details view paper
  • Downloaded 745 times
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    • Site-wide: 16,989 out of 84,588
    • In bioinformatics: 2,586 out of 8,113
  • Year to date:
    • Site-wide: 64,884 out of 84,588
  • Since beginning of last month:
    • Site-wide: 69,691 out of 84,588

ssHMM: Extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data

bioinformatics more details view paper
  • Downloaded 616 times
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    • Site-wide: 22,394 out of 84,588
    • In bioinformatics: 3,198 out of 8,113
  • Year to date:
    • Site-wide: 78,477 out of 84,588
  • Since beginning of last month:
    • Site-wide: 77,725 out of 84,588

Determinants of Transcription Initiation Directionality in Metazoans

molecular biology more details view paper
  • Downloaded 615 times
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    • Site-wide: 22,470 out of 84,588
    • In molecular biology: 718 out of 2,843
  • Year to date:
    • Site-wide: 69,818 out of 84,588
  • Since beginning of last month:
    • Site-wide: 66,174 out of 84,588

SSMART: Sequence-structure motif identification for RNA-binding proteins

bioinformatics more details view paper
  • Downloaded 598 times
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    • Site-wide: 23,372 out of 84,588
    • In bioinformatics: 3,300 out of 8,113
  • Year to date:
    • Site-wide: 48,312 out of 84,588
  • Since beginning of last month:
    • Site-wide: 31,692 out of 84,588

Global identification of functional microRNA::mRNA interactions in Drosophila

systems biology more details view paper
  • Downloaded 486 times
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    • In systems biology: 877 out of 2,232
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  • Since beginning of last month:
    • Site-wide: 47,952 out of 84,588

The m6A reader Ythdf restricts axonal growth in Drosophila through target selection modulation of the Fragile X mental retardation protein

molecular biology more details view paper
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    • In molecular biology: 1,481 out of 2,843
  • Year to date:
    • Site-wide: 5,403 out of 84,588
  • Since beginning of last month:
    • Site-wide: 9,170 out of 84,588

Chloroplast cold-resistance is mediated by the acidic domain of the RNA binding protein CP31A

plant biology more details view paper
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    • In plant biology: 1,800 out of 2,585
  • Year to date:
    • Site-wide: 32,617 out of 84,588
  • Since beginning of last month:
    • Site-wide: 50,169 out of 84,588

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