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Author: Hongkui Zeng

Rankings

  • All-time downloads: 167,361 (rank: 504 )
  • Categories:
    • bioinformatics: 1,748 (rank: 9,171 (tie) )
    • developmental biology: 429 (rank: 11,836 (tie) )
    • molecular biology: 627 (rank: 10,998 (tie) )
    • neuroscience: 164,557 (rank: 3 )

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Preprints

A suite of transgenic driver and reporter mouse lines with enhanced brain cell type targeting and functionality

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Enhancer viruses and a transgenic platform for combinatorial cell subclass-specific labeling

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Shared and distinct transcriptomic cell types across neocortical areas

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  • Downloaded 7,150 times
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    • Site-wide: 1,429
    • In neuroscience: 65
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A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

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The organization of intracortical connections by layer and cell class in the mouse brain

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Brain-wide single neuron reconstruction reveals morphological diversity in molecularly defined striatal, thalamic, cortical and claustral neuron types

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  • Downloaded 6,227 times
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    • Site-wide: 1,715
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Conserved cell types with divergent features between human and mouse cortex

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An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

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  • Downloaded 6,086 times
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    • Site-wide: 1,780
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A large-scale, standardized physiological survey reveals higher order coding throughout the mouse visual cortex

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Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

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    • Site-wide: 1,921
    • In neuroscience: 100
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Distinct descending motor cortex pathways and their roles in movement

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    • Site-wide: 2,184
    • In neuroscience: 122
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Toward an integrated classification of neuronal cell types: morphoelectric and transcriptomic characterization of individual GABAergic cortical neurons

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    • In neuroscience: 134
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Classification of electrophysiological and morphological types in mouse visual cortex

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  • Downloaded 4,906 times
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    • In neuroscience: 143
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All-optical electrophysiology reveals brain-state dependent changes in hippocampal subthreshold dynamics and excitability

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    • Site-wide: 2,599
    • In neuroscience: 160
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A survey of spiking activity reveals a functional hierarchy of mouse corticothalamic visual areas

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    • Site-wide: 2,619
    • In neuroscience: 162
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Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex

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  • Downloaded 4,492 times
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    • Site-wide: 2,685
    • In neuroscience: 168
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A multimodal cell census and atlas of the mammalian primary motor cortex

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  • Downloaded 4,194 times
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    • Site-wide: 2,978
    • In neuroscience: 196
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Equivalent high-resolution identification of neuronal cell types with single-nucleus and single-cell RNA-sequencing

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    • Site-wide: 3,316
    • In neuroscience: 232
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Phenotypic variation within and across transcriptomic cell types in mouse motor cortex

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Molecular, spatial and projection diversity of neurons in primary motor cortex revealed by in situ single-cell transcriptomics

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    • Site-wide: 3,997
    • In neuroscience: 320
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Aberrant Cortical Activity In Multiple GCaMP6-Expressing Transgenic Mouse Lines

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    • Site-wide: 4,426
    • In neuroscience: 366
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Relationship between simultaneously recorded spiking activity and fluorescence signal in GCaMP6 transgenic mice

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    • Site-wide: 4,453
    • In neuroscience: 369
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    • Site-wide: 102,334

Single-Cell Transcriptomic Evidence for Dense Intracortical Neuropeptide Networks

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  • Downloaded 2,836 times
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    • Site-wide: 5,178
    • In neuroscience: 453
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Cellular Anatomy of the Mouse Primary Motor Cortex

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  • Downloaded 2,755 times
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    • Site-wide: 5,390
    • In neuroscience: 473
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RecV recombinase system for in vivo targeted optogenomic modifications of single cells or cell populations

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  • Downloaded 2,580 times
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    • Site-wide: 5,928
    • In neuroscience: 530
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Human cortical expansion involves diversification and specialization of supragranular intratelencephalic-projecting neurons

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  • Downloaded 2,195 times
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    • Site-wide: 7,526
    • In neuroscience: 723
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    • Site-wide: 8,791

Isoform cell type specificity in the mouse primary motor cortex

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  • Downloaded 2,195 times
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    • Site-wide: 7,525
    • In neuroscience: 722
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Sparse recurrent excitatory connectivity in the microcircuit of the adult mouse and human cortex

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    • Site-wide: 8,216
    • In neuroscience: 805
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Parallel holographic illumination enables sub-millisecond two-photon optogenetic activation in mouse visual cortex in vivo

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Multimodal cell type correspondence by intersectional mFISH in intact tissues

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    • Site-wide: 10,065
    • In neuroscience: 1,039
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Regional, layer, and cell-class specific connectivity of the mouse default mode network

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  • Downloaded 1,515 times
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    • Site-wide: 12,948
    • In neuroscience: 1,420
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High resolution data-driven model of the mouse connectome

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    • In neuroscience: 1,430
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Dense Functional and Molecular Readout of a Circuit Hub in Sensory Cortex

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    • Site-wide: 14,649
    • In neuroscience: 1,676
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On the correspondence of electrical and optical physiology in in vivo population-scale two-photon calcium imaging.

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    • Site-wide: 15,433
    • In neuroscience: 1,782
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    • Site-wide: 39,524
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Activation of neuromodulatory axon projections in primary visual cortex during periods of locomotion and pupil dilation

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    • Site-wide: 15,665
    • In neuroscience: 1,812
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Connectional architecture of a mouse hypothalamic circuit node controlling social behavior

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  • Downloaded 1,310 times
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    • Site-wide: 16,217
    • In neuroscience: 1,914
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Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization

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  • Downloaded 1,257 times
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    • Site-wide: 17,226
    • In neuroscience: 2,062
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The Markov link method: a nonparametric approach to combine observations from multiple experiments

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    • In bioinformatics: 2,172
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Flexible Learning-Free Segmentation and Reconstruction for Sparse Neuronal Circuit Tracing

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Single-cell regulatory landscape and disease vulnerability map of adult Macaque cortex

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Local Connectivity and Synaptic Dynamics in Mouse and Human Neocortex

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Single-cell RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates and humans

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Distribution and strength of interlaminar synaptic connectivity in mouse primary visual cortex revealed by two-photon optogenetic stimulation

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The spatial structure of feedforward information in mouse primary visual cortex

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The claustrum is required for reward acquisition under high cognitive demand

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Molecular and genetic approaches for assaying human cell type synaptic connectivity

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    • In neuroscience: 5,187
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Single Cell Enhancer Activity Maps Neuronal Lineages in Embryonic Mouse Basal Ganglia

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    • Site-wide: 39,735
    • In neuroscience: 5,464
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Distinct transcriptomic cell types and neural circuits of the subiculum and prosubiculum along the dorsal-ventral axis

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  • Downloaded 701 times
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    • Site-wide: 39,685
    • In neuroscience: 5,460
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    • Site-wide: 46,399
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TeraVR Empowers Precise Reconstruction of Complete 3-D Neuronal Morphology in the Whole Brain

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    • Site-wide: 43,594
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A collection of genetic mouse lines and related tools for inducible and reversible intersectional misexpression

molecular biology more details view paper
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    • In molecular biology: 1,307
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Consistent cross-modal identification of cortical neurons with coupled autoencoders

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    • Site-wide: 50,137
    • In neuroscience: 7,179
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SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology

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  • Downloaded 561 times
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Transcriptional Network Orchestrating Regional Patterning of Cortical Progenitors

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  • Downloaded 449 times
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    • Site-wide: 67,791
    • In neuroscience: 10,022
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    • Site-wide: 44,186
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    • Site-wide: 130,694

MorphoHub: A Platform for Petabyte-Scale Multi-Morphometry Generation

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  • Downloaded 445 times
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    • Site-wide: 68,414
    • In neuroscience: 10,122
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    • Site-wide: 9,567
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Local processing of visual information in neurites of VGluT3-expressing amacrine cells

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  • Downloaded 440 times
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    • Site-wide: 69,306
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Cell-nonautonomous local and systemic responses to cell arrest enable long-bone catch-up growth

developmental biology more details view paper
  • Downloaded 429 times
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Signature morpho-electric, transcriptomic, and dendritic properties of extratelencephalic-projecting human layer 5 neocortical pyramidal neurons

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  • Downloaded 403 times
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    • Site-wide: 75,585
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Voltage imaging using transgenic mouse lines expressing the GEVI ArcLight in two olfactory cell types

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Motion/direction-sensitive thalamic neurons project extensively to the middle layers of primary visual cortex

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