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Author: Xin Gao

Rankings

  • All-time downloads: 40,463 (rank: 5,934 )
  • Categories:
    • bioinformatics: 30,101 (rank: 142 )
    • biophysics: 2,946 (rank: 1,801 (tie) )
    • cancer biology: 1,653 (rank: 6,348 (tie) )
    • evolutionary biology: 294 (rank: 23,667 (tie) )
    • gastroenterology: 453 (rank: 1,239 (tie) )
    • immunology: 1,542 (rank: 10,012 (tie) )
    • physiology: 576 (rank: 3,889 (tie) )
    • systems biology: 1,639 (rank: 3,238 (tie) )

Downloads per author, site-wide

Preprints

Deep learning in bioinformatics: introduction, application, and perspective in big data era

bioinformatics more details view paper
  • Downloaded 7,027 times
  • Download rankings, all-time:
    • Site-wide: 1,962
    • In bioinformatics: 114
  • Year to date:
    • Site-wide: 7,433
  • Since beginning of last month:
    • Site-wide: 9,050

ClusterMap: Comparing analyses across multiple Single Cell RNA-Seq profiles

bioinformatics more details view paper
  • Downloaded 6,055 times
  • Download rankings, all-time:
    • Site-wide: 2,399
    • In bioinformatics: 156
  • Year to date:
    • Site-wide: 25,787
  • Since beginning of last month:
    • Site-wide: 24,220

PGCN: Disease gene prioritization by disease and gene embedding through graph convolutional neural networks

bioinformatics more details view paper
  • Downloaded 4,500 times
  • Download rankings, all-time:
    • Site-wide: 3,584
    • In bioinformatics: 287
  • Year to date:
    • Site-wide: 8,279
  • Since beginning of last month:
    • Site-wide: 7,736

Role of 1’-Ribose Cyano Substitution for Remdesivir to Effectively Inhibit Nucleotide Addition and Proofreading in SARS-CoV-2 Viral RNA Replication

biophysics more details view paper
  • Downloaded 2,307 times
  • Download rankings, all-time:
    • Site-wide: 9,327
    • In biophysics: 170
  • Year to date:
    • Site-wide: 36,424
  • Since beginning of last month:
    • Site-wide: 26,244

Machine learning with biomedical ontologies

bioinformatics more details view paper
  • Downloaded 1,844 times
  • Download rankings, all-time:
    • Site-wide: 12,970
    • In bioinformatics: 1,371
  • Year to date:
    • Site-wide: 31,957
  • Since beginning of last month:
    • Site-wide: 42,048

DeepSimulator: a deep simulator for Nanopore sequencing

bioinformatics more details view paper
  • Downloaded 1,524 times
  • Download rankings, all-time:
    • Site-wide: 17,269
    • In bioinformatics: 1,820
  • Year to date:
    • Site-wide: 114,002
  • Since beginning of last month:
    • Site-wide: 164,392

An accurate and rapid continuous wavelet dynamic time warping algorithm for unbalanced global mapping in nanopore sequencing

bioinformatics more details view paper
  • Downloaded 1,360 times
  • Download rankings, all-time:
    • Site-wide: 20,558
    • In bioinformatics: 2,181
  • Year to date:
    • Site-wide: 113,946
  • Since beginning of last month:
    • Site-wide: 119,069

Analysis of the effects of related fingerprints on molecular similarity using an eigenvalue entropy approach

bioinformatics more details view paper
  • Downloaded 1,167 times
  • Download rankings, all-time:
    • Site-wide: 26,012
    • In bioinformatics: 2,930
  • Year to date:
    • Site-wide: 30,340
  • Since beginning of last month:
    • Site-wide: 36,217

Atypical B cells are a normal component of immune responses to vaccination and infection in humans

immunology more details view paper
  • Downloaded 1,075 times
  • Download rankings, all-time:
    • Site-wide: 29,525
    • In immunology: 1,040
  • Year to date:
    • Site-wide: 39,421
  • Since beginning of last month:
    • Site-wide: 49,132

Integrative Clinical and Molecular Characterization of Translocation Renal Cell Carcinoma

cancer biology more details view paper
  • Downloaded 1,029 times
  • Download rankings, all-time:
    • Site-wide: 31,361
    • In cancer biology: 772
  • Year to date:
    • Site-wide: 39,790
  • Since beginning of last month:
    • Site-wide: 114,692

PureseqTM: efficient and accurate prediction of transmembrane topology from amino acid sequence only

bioinformatics more details view paper
  • Downloaded 986 times
  • Download rankings, all-time:
    • Site-wide: 33,465
    • In bioinformatics: 3,546
  • Year to date:
    • Site-wide: 67,200
  • Since beginning of last month:
    • Site-wide: 119,277

NERO: A Biomedical Named-entity (Recognition) Ontology with a Large, Annotated Corpus Reveals Meaningful Associations Through Text Embedding

systems biology more details view paper
  • Downloaded 953 times
  • Download rankings, all-time:
    • Site-wide: 35,215
    • In systems biology: 663
  • Year to date:
    • Site-wide: 58,892
  • Since beginning of last month:
    • Site-wide: 148,158

PointSite: a point cloud segmentation tool for identication of protein ligand binding atoms

bioinformatics more details view paper
  • Downloaded 920 times
  • Download rankings, all-time:
    • Site-wide: 37,076
    • In bioinformatics: 3,853
  • Year to date:
    • Site-wide: 54,960
  • Since beginning of last month:
    • Site-wide: 66,722

Novel algorithms for efficient subsequence searching and mapping in nanopore raw signals towards targeted sequencing

bioinformatics more details view paper
  • Downloaded 910 times
  • Download rankings, all-time:
    • Site-wide: 37,687
    • In bioinformatics: 3,893
  • Year to date:
    • Site-wide: 108,953
  • Since beginning of last month:
    • Site-wide: 93,387

Reduced graphene oxide membrane as supporting film for high-resolution cryo-EM

biophysics more details view paper
  • Downloaded 715 times
  • Download rankings, all-time:
    • Site-wide: 53,324
    • In biophysics: 1,715
  • Year to date:
    • Site-wide: 79,198
  • Since beginning of last month:
    • Site-wide: 111,868

SupportNet: a novel incremental learning framework through deep learning and support data

bioinformatics more details view paper
  • Downloaded 655 times
  • Download rankings, all-time:
    • Site-wide: 60,237
    • In bioinformatics: 5,567
  • Year to date:
    • Site-wide: 184,282
  • Since beginning of last month:
    • Site-wide: 183,516

Integrative Molecular Characterization of Sarcomatoid and Rhabdoid Renal Cell Carcinoma Reveals Determinants of Poor Prognosis and Response to Immune Checkpoint Inhibitors

cancer biology more details view paper
  • Downloaded 652 times
  • Download rankings, all-time:
    • Site-wide: 60,560
    • In cancer biology: 1,659
  • Year to date:
    • Site-wide: 152,665
  • Since beginning of last month:
    • Site-wide: 117,060

Computational Model for Simulating Drug-Induced Arrhythmia Sensitivity of Human iPSC-derived Cardiomyocytes

physiology more details view paper
  • Downloaded 583 times
  • Download rankings, all-time:
    • Site-wide: 69,842
    • In physiology: 396
  • Year to date:
    • Site-wide: 175,176
  • Since beginning of last month:
    • Site-wide: 132,913

Formal axioms in biomedical ontologies improve analysis and interpretation of associated data

bioinformatics more details view paper
  • Downloaded 545 times
  • Download rankings, all-time:
    • Site-wide: 75,838
    • In bioinformatics: 6,783
  • Year to date:
    • Site-wide: 143,672
  • Since beginning of last month:
    • Site-wide: 168,773

Avid binding by B cells to the Plasmodium circumsporozoite protein repeat suppresses responses to protective subdominant epitopes

immunology more details view paper
  • Downloaded 531 times
  • Download rankings, all-time:
    • Site-wide: 78,196
    • In immunology: 2,358
  • Year to date:
    • Site-wide: 93,662
  • Since beginning of last month:
    • Site-wide: 117,534

Proteome-level assessment of origin, prevalence and function of Leucine-Aspartic Acid (LD) motifs

bioinformatics more details view paper
  • Downloaded 498 times
  • Download rankings, all-time:
    • Site-wide: 84,355
    • In bioinformatics: 7,403
  • Year to date:
    • Site-wide: 142,422
  • Since beginning of last month:
    • Site-wide: 103,395

Modeling the IL-2-Teff-Treg system in Systemic Lupus Erythematosus patients: possible mechanism and treatment strategies

systems biology more details view paper
  • Downloaded 482 times
  • Download rankings, all-time:
    • Site-wide: 87,456
    • In systems biology: 1,961
  • Year to date:
    • Site-wide: 48,780
  • Since beginning of last month:
    • Site-wide: 22,030

Serum metabolite profiles are associated with the presence of advanced liver fibrosis in Chinese patients with chronic hepatitis B viral infection

gastroenterology more details view paper
  • Downloaded 458 times
  • Download rankings, all-time:
    • Site-wide: 92,423
    • In gastroenterology: 96
  • Year to date:
    • Site-wide: 165,836
  • Since beginning of last month:
    • Site-wide: 171,862

HiC-LDNet: A general and robust deep learning framework for accurate chromatin loop detection in genome-wide contact maps

bioinformatics more details view paper
  • Downloaded 425 times
  • Download rankings, all-time:
    • Site-wide: 99,784
    • In bioinformatics: 11,179
  • Year to date:
    • Site-wide: 4,626
  • Since beginning of last month:
    • Site-wide: 7,802

Automatic identification of small molecules that promote cell conversion and reprogramming

bioinformatics more details view paper
  • Downloaded 419 times
  • Download rankings, all-time:
    • Site-wide: 101,338
    • In bioinformatics: 8,427
  • Year to date:
    • Site-wide: 145,440
  • Since beginning of last month:
    • Site-wide: 108,799

Identifying Novel Targets by using Drug-binding Site Signature: A Case Study of Kinase Inhibitors

bioinformatics more details view paper
  • Downloaded 412 times
  • Download rankings, all-time:
    • Site-wide: 103,011
    • In bioinformatics: 8,498
  • Year to date:
    • Site-wide: 161,249
  • Since beginning of last month:
    • Site-wide: 173,155

DeeReCT-APA: Prediction of Alternative Polyadenylation Site Usage Through Deep Learning

bioinformatics more details view paper
  • Downloaded 407 times
  • Download rankings, all-time:
    • Site-wide: 104,190
    • In bioinformatics: 8,758
  • Year to date:
    • Site-wide: 101,347
  • Since beginning of last month:
    • Site-wide: 157,692

An RNA-seq quantification method for analysis of transcriptional aberrations

bioinformatics more details view paper
  • Downloaded 362 times
  • Download rankings, all-time:
    • Site-wide: 115,613
    • In bioinformatics: 9,292
  • Year to date:
    • Site-wide: 160,696
  • Since beginning of last month:
    • Site-wide: 138,696

ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation

bioinformatics more details view paper
  • Downloaded 356 times
  • Download rankings, all-time:
    • Site-wide: 117,112
    • In bioinformatics: 9,436
  • Year to date:
    • Site-wide: 134,094
  • Since beginning of last month:
    • Site-wide: 127,650

Self-normalizing learning on biomedical ontologies using a deep Siamese neural network

bioinformatics more details view paper
  • Downloaded 314 times
  • Download rankings, all-time:
    • Site-wide: 128,821
    • In bioinformatics: 9,970
  • Year to date:
    • Site-wide: 153,176
  • Since beginning of last month:
    • Site-wide: 172,254

Stable maintenance of a hidden switch as a way to increase the gene expression stability

evolutionary biology more details view paper
  • Downloaded 307 times
  • Download rankings, all-time:
    • Site-wide: 130,695
    • In evolutionary biology: 6,079
  • Year to date:
    • Site-wide: 130,815
  • Since beginning of last month:
    • Site-wide: 154,619

Integrated metabolic modeling, culturing and transcriptomics explains enhanced virulence of V. cholerae during co-infection with ETEC

systems biology more details view paper
  • Downloaded 260 times
  • Download rankings, all-time:
    • Site-wide: 144,728
    • In systems biology: 2,880
  • Year to date:
    • Site-wide: 161,795
  • Since beginning of last month:
    • Site-wide: 184,917

Group Similarity Constraint Functional Brain Network Estimation for Mild Congititive Impairment Classification

bioinformatics more details view paper
  • Downloaded 223 times
  • Download rankings, all-time:
    • Site-wide: 155,192
    • In bioinformatics: 11,527
  • Year to date:
    • Site-wide: 170,019
  • Since beginning of last month:
    • Site-wide: 132,447

DeeReCT-TSS: A novel meta-learning-based method annotates TSS in multiple cell types based on DNA sequences and RNA-seq data

bioinformatics more details view paper
  • Downloaded 202 times
  • Download rankings, all-time:
    • Site-wide: 160,842
    • In bioinformatics: 12,137
  • Year to date:
    • Site-wide: 72,122
  • Since beginning of last month:
    • Site-wide: 68,914

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