Author: Juri Rappsilber

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Preprints

Cleavable crosslinkers redefined by novel MS3-trigger algorithm

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In-cell architecture of an actively transcribing-translating expressome

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Visualizing translation dynamics at atomic detail inside a bacterial cell

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An integrated workflow for cross-linking/mass spectrometry

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A Structure-Based Mechanism for DNA Entry into the Cohesin Ring

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Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

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A folded conformation of MukBEF and Cohesin

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Identification of RNA-associated peptides, iRAP, defines precise sites of protein-RNA interaction

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Nucleosomal Asymmetry Shapes Histone Mark Binding and Promotes Poising at Bivalent Domains

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Stress-induced translation inhibition through rapid displacement of scanning initiation factors

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Quantitative cross-linking/mass spectrometry reveals subtle protein conformational changes

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Protein Complexes in cells by AI-assisted structural proteomics

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The human proteome co-regulation map reveals functional relationships between proteins

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Sequential digestion with Trypsin and Elastase in cross-linking/mass spectrometry

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Defining the RNA Interactome by Total RNA-Associated Protein Purification

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xiView: A common platform for the downstream analysis of Crosslinking Mass Spectrometry data

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Specific recognition and ubiquitination of slow-moving ribosomes by human CCR4-NOT

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Cryo-EM reveals the complex architecture of dynactin's shoulder and pointed end

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Quantitative cross-linking/mass spectrometry using isotope-labeled cross-linkers and MaxQuant

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Mpe1 senses the polyadenylation signal in pre-mRNA to control cleavage and polyadenylation

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Reliable identification of protein-protein interactions by crosslinking mass spectrometry

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Swr1 mediated H2A.Z/Pht1 incorporation designates centromere DNA for de novo CENP-A/Cnp1 assembly

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Structural insights into Cullin4-RING ubiquitin ligase remodelling by Vpr from simian immunodeficiency viruses

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RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination

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DAXX adds a de novo H3.3K9me3 deposition pathway to the histone chaperone network

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SARS-CoV-2 Nsp1 N-terminal and linker regions as a platform for host translational shutoff

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Laboratory evolution of Escherichia coli enables life based on fluorinated amino acids

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Nano Random Forests to mine protein complexes and their relationships in quantitative proteomics data

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Structure of complement C3(H2O) revealed by quantitative cross-linking/mass spectrometry and modeling

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Molecular Basis for CPC-Sgo1 Interaction: Implications for Centromere Localisation and Function of the CPC

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In-Search Assignment of Monoisotopic Peaks Improves the Identification of Cross-Linked Peptides

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Architecture of TAF11/TAF13/TBP complex suggests novel regulatory state in General Transcription Factor TFIID function

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A systematic analysis of Trypanosoma brucei chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination

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The proteomic landscape of centromeric chromatin reveals an essential role for the Ctf19CCAN complex in meiotic kinetochore assembly

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Proteomics Using Protease Alternatives to Trypsin Benefits from Sequential Digestion with Trypsin

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STING Nuclear Partners Contribute to Innate Immune Signalling Responses

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Blind testing cross-linking/mass spectrometry under the auspices of the 11th critical assessment of methods of protein structure prediction (CASP11)

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Structure and mechanism of a novel cytomegaloviral DCAF mediating interferon antagonism

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treeClust improves protein co-regulation analysis due to robust selectivity for close linear relationships

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Improved peptide backbone fragmentation is the primary advantage of MS-cleavable crosslinkers

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Proteasome-dependent truncation of the negative heterochromatin regulator Epe1 mediates antifungal resistance

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Substrate Specificity of the TRAMP Nuclear Surveillance Complexes

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Structural Basis for CAL1-Mediated Centromere Maintenance

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Structural Basis for Mis18 Complex Assembly: Implications for Centromere Maintenance

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Fission yeast NDR/LATS kinase Orb6 regulates exocytosis via phosphorylation of exocyst complex

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Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore

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Architecture of the Mto1/2 microtubule nucleation complex

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Retention Time Prediction Using Neural Networks Increases Identifications in Crosslinking Mass Spectrometry

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Hap2-Ino80 facilitated transcription promotes de novo establishment of CENP-A chromatin

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The C-terminal helix of BubR1 is essential for CENP-E-dependent chromosome alignment

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AI-guided cryo-EM probes a thermophilic cell-free system with succinyl-coA manufacturing capability

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Mapping the invisible chromatin transactions of prophase chromosome remodelling

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Non-covalently-associated peptides are observed during liquid chromatography-mass spectrometry and affect crosslink analyses

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Isolation of protein N-terminal peptides by charge-mediated position- elective enrichment using strong cation exchange chromatography

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Non-redundant functions of H2A.Z.1 and H2A.Z.2 in chromosome segregation and cell cycle progression

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False discovery rate estimation and heterobifunctional cross-linkers

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Evolving a mitigation of the stress response pathway to change the basic chemistry of life

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Ultraviolet Photodissociation of tryptic peptide backbones at 213 nm

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Megadalton-sized dityrosine aggregates of α-synuclein retain high degrees of structural disorder and internal dynamics.

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The phospho-docking protein 14-3-3 regulates microtubule-associated proteins in oocytes including the chromosomal passenger Borealin

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The SPARC complex defines RNAPII promoters in Trypanosoma brucei

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DomainRank: Improving Biological Data Sets With Domain Knowledge and Google's PageRank

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