Rxivist logo

Author: Juri Rappsilber

Rankings

  • All-time downloads: 53,084 (rank: 4,867 )
  • Categories:
    • biochemistry: 16,598 (rank: 163 )
    • bioinformatics: 1,895 (rank: 12,168 (tie) )
    • biophysics: 331 (rank: 24,881 (tie) )
    • cell biology: 9,128 (rank: 642 )
    • immunology: 559 (rank: 31,686 (tie) )
    • molecular biology: 19,647 (rank: 86 )
    • synthetic biology: 1,068 (rank: 3,287 (tie) )
    • systems biology: 3,338 (rank: 1,841 )

Downloads per author, site-wide

Preprints

Cleavable crosslinkers redefined by novel MS3-trigger algorithm

bioinformatics more details view paper

No download data for this paper yet.

In-cell architecture of an actively transcribing-translating expressome

molecular biology more details view paper
  • Downloaded 4,091 times
  • Download rankings, all-time:
    • Site-wide: 4,640
    • In molecular biology: 95
  • Year to date:
    • Site-wide: 55,050
  • Since beginning of last month:
    • Site-wide: 77,925

Visualizing translation dynamics at atomic detail inside a bacterial cell

biochemistry more details view paper
  • Downloaded 4,037 times
  • Download rankings, all-time:
    • Site-wide: 4,745
    • In biochemistry: 79
  • Year to date:
    • Site-wide: 20,158
  • Since beginning of last month:
    • Site-wide: 12,690

An integrated workflow for cross-linking/mass spectrometry

biochemistry more details view paper
  • Downloaded 3,162 times
  • Download rankings, all-time:
    • Site-wide: 6,801
    • In biochemistry: 122
  • Year to date:
    • Site-wide: 78,832
  • Since beginning of last month:
    • Site-wide: 117,034

A Structure-Based Mechanism for DNA Entry into the Cohesin Ring

molecular biology more details view paper
  • Downloaded 2,561 times
  • Download rankings, all-time:
    • Site-wide: 9,238
    • In molecular biology: 203
  • Year to date:
    • Site-wide: 61,972
  • Since beginning of last month:
    • Site-wide: 188,087

Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

biochemistry more details view paper
  • Downloaded 1,694 times
  • Download rankings, all-time:
    • Site-wide: 17,384
    • In biochemistry: 380
  • Year to date:
    • Site-wide: 57,780
  • Since beginning of last month:
    • Site-wide: 90,113

A folded conformation of MukBEF and Cohesin

molecular biology more details view paper
  • Downloaded 1,502 times
  • Download rankings, all-time:
    • Site-wide: 21,060
    • In molecular biology: 546
  • Year to date:
    • Site-wide: 177,123
  • Since beginning of last month:
    • Site-wide: 117,039

Identification of RNA-associated peptides, iRAP, defines precise sites of protein-RNA interaction

molecular biology more details view paper
  • Downloaded 1,277 times
  • Download rankings, all-time:
    • Site-wide: 27,343
    • In molecular biology: 719
  • Year to date:
    • Site-wide: 37,346
  • Since beginning of last month:
    • Site-wide: 120,128

Nucleosomal Asymmetry Shapes Histone Mark Binding and Promotes Poising at Bivalent Domains

molecular biology more details view paper
  • Downloaded 1,262 times
  • Download rankings, all-time:
    • Site-wide: 27,846
    • In molecular biology: 734
  • Year to date:
    • Site-wide: 27,114
  • Since beginning of last month:
    • Site-wide: 46,806

Stress-induced translation inhibition through rapid displacement of scanning initiation factors

cell biology more details view paper
  • Downloaded 1,253 times
  • Download rankings, all-time:
    • Site-wide: 28,159
    • In cell biology: 1,029
  • Year to date:
    • Site-wide: 19,558
  • Since beginning of last month:
    • Site-wide: 55,056

Quantitative cross-linking/mass spectrometry reveals subtle protein conformational changes

biochemistry more details view paper
  • Downloaded 1,236 times
  • Download rankings, all-time:
    • Site-wide: 28,751
    • In biochemistry: 635
  • Year to date:
    • Site-wide: 104,203
  • Since beginning of last month:
    • Site-wide: 183,878

Protein Complexes in cells by AI-assisted structural proteomics

molecular biology more details view paper
  • Downloaded 1,200 times
  • Download rankings, all-time:
    • Site-wide: 30,138
    • In molecular biology: 728
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

The human proteome co-regulation map reveals functional relationships between proteins

systems biology more details view paper
  • Downloaded 1,149 times
  • Download rankings, all-time:
    • Site-wide: 32,291
    • In systems biology: 585
  • Year to date:
    • Site-wide: 139,106
  • Since beginning of last month:
    • Site-wide: 154,885

Sequential digestion with Trypsin and Elastase in cross-linking/mass spectrometry

biochemistry more details view paper
  • Downloaded 1,083 times
  • Download rankings, all-time:
    • Site-wide: 35,270
    • In biochemistry: 825
  • Year to date:
    • Site-wide: 194,633
  • Since beginning of last month:
    • Site-wide: 146,624

Defining the RNA Interactome by Total RNA-Associated Protein Purification

cell biology more details view paper
  • Downloaded 1,082 times
  • Download rankings, all-time:
    • Site-wide: 35,343
    • In cell biology: 1,323
  • Year to date:
    • Site-wide: 138,371
  • Since beginning of last month:
    • Site-wide: 201,331

xiView: A common platform for the downstream analysis of Crosslinking Mass Spectrometry data

molecular biology more details view paper
  • Downloaded 1,054 times
  • Download rankings, all-time:
    • Site-wide: 36,847
    • In molecular biology: 1,003
  • Year to date:
    • Site-wide: 78,044
  • Since beginning of last month:
    • Site-wide: 26,272

Specific recognition and ubiquitination of slow-moving ribosomes by human CCR4-NOT

molecular biology more details view paper
  • Downloaded 988 times
  • Download rankings, all-time:
    • Site-wide: 40,755
    • In molecular biology: 1,187
  • Year to date:
    • Site-wide: 9,924
  • Since beginning of last month:
    • Site-wide: 6,468

Cryo-EM reveals the complex architecture of dynactin's shoulder and pointed end

molecular biology more details view paper
  • Downloaded 974 times
  • Download rankings, all-time:
    • Site-wide: 41,699
    • In molecular biology: 1,140
  • Year to date:
    • Site-wide: 113,075
  • Since beginning of last month:
    • Site-wide: 129,876

Quantitative cross-linking/mass spectrometry using isotope-labeled cross-linkers and MaxQuant

biochemistry more details view paper
  • Downloaded 901 times
  • Download rankings, all-time:
    • Site-wide: 46,937
    • In biochemistry: 1,166
  • Year to date:
    • Site-wide: 198,386
  • Since beginning of last month:
    • Site-wide: 183,879

Mpe1 senses the polyadenylation signal in pre-mRNA to control cleavage and polyadenylation

molecular biology more details view paper
  • Downloaded 872 times
  • Download rankings, all-time:
    • Site-wide: 49,413
    • In molecular biology: 1,391
  • Year to date:
    • Site-wide: 41,425
  • Since beginning of last month:
    • Site-wide: 70,089

Reliable identification of protein-protein interactions by crosslinking mass spectrometry

systems biology more details view paper
  • Downloaded 818 times
  • Download rankings, all-time:
    • Site-wide: 54,421
    • In systems biology: 1,077
  • Year to date:
    • Site-wide: 109,445
  • Since beginning of last month:
    • Site-wide: 186,343

Swr1 mediated H2A.Z/Pht1 incorporation designates centromere DNA for de novo CENP-A/Cnp1 assembly

cell biology more details view paper
  • Downloaded 799 times
  • Download rankings, all-time:
    • Site-wide: 56,324
    • In cell biology: 2,345
  • Year to date:
    • Site-wide: 141,809
  • Since beginning of last month:
    • Site-wide: 150,979

Structural insights into Cullin4-RING ubiquitin ligase remodelling by Vpr from simian immunodeficiency viruses

biochemistry more details view paper
  • Downloaded 785 times
  • Download rankings, all-time:
    • Site-wide: 57,785
    • In biochemistry: 1,522
  • Year to date:
    • Site-wide: 61,286
  • Since beginning of last month:
    • Site-wide: 107,251

RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination

molecular biology more details view paper
  • Downloaded 771 times
  • Download rankings, all-time:
    • Site-wide: 59,420
    • In molecular biology: 1,675
  • Year to date:
    • Site-wide: 198,029
  • Since beginning of last month:
    • Site-wide: 176,970

DAXX adds a de novo H3.3K9me3 deposition pathway to the histone chaperone network

molecular biology more details view paper
  • Downloaded 758 times
  • Download rankings, all-time:
    • Site-wide: 60,835
    • In molecular biology: 1,939
  • Year to date:
    • Site-wide: 4,870
  • Since beginning of last month:
    • Site-wide: 4,950

SARS-CoV-2 Nsp1 N-terminal and linker regions as a platform for host translational shutoff

molecular biology more details view paper
  • Downloaded 757 times
  • Download rankings, all-time:
    • Site-wide: 61,035
    • In molecular biology: 1,815
  • Year to date:
    • Site-wide: 20,355
  • Since beginning of last month:
    • Site-wide: 25,205

Laboratory evolution of Escherichia coli enables life based on fluorinated amino acids

synthetic biology more details view paper
  • Downloaded 741 times
  • Download rankings, all-time:
    • Site-wide: 62,992
    • In synthetic biology: 756
  • Year to date:
    • Site-wide: 37,845
  • Since beginning of last month:
    • Site-wide: 151,198

Nano Random Forests to mine protein complexes and their relationships in quantitative proteomics data

cell biology more details view paper
  • Downloaded 710 times
  • Download rankings, all-time:
    • Site-wide: 66,955
    • In cell biology: 2,927
  • Year to date:
    • Site-wide: 97,757
  • Since beginning of last month:
    • Site-wide: 209,812

Structure of complement C3(H2O) revealed by quantitative cross-linking/mass spectrometry and modeling

biochemistry more details view paper
  • Downloaded 689 times
  • Download rankings, all-time:
    • Site-wide: 69,860
    • In biochemistry: 1,893
  • Year to date:
    • Site-wide: 99,952
  • Since beginning of last month:
    • Site-wide: 153,033

Molecular Basis for CPC-Sgo1 Interaction: Implications for Centromere Localisation and Function of the CPC

cell biology more details view paper
  • Downloaded 680 times
  • Download rankings, all-time:
    • Site-wide: 71,124
    • In cell biology: 3,144
  • Year to date:
    • Site-wide: 116,635
  • Since beginning of last month:
    • Site-wide: 70,760

In-Search Assignment of Monoisotopic Peaks Improves the Identification of Cross-Linked Peptides

bioinformatics more details view paper
  • Downloaded 655 times
  • Download rankings, all-time:
    • Site-wide: 74,898
    • In bioinformatics: 6,934
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 151,076

Architecture of TAF11/TAF13/TBP complex suggests novel regulatory state in General Transcription Factor TFIID function

biochemistry more details view paper
  • Downloaded 644 times
  • Download rankings, all-time:
    • Site-wide: 76,560
    • In biochemistry: 2,051
  • Year to date:
    • Site-wide: 163,069
  • Since beginning of last month:
    • Site-wide: 204,862

A systematic analysis of Trypanosoma brucei chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination

molecular biology more details view paper
  • Downloaded 636 times
  • Download rankings, all-time:
    • Site-wide: 77,769
    • In molecular biology: 2,206
  • Year to date:
    • Site-wide: 187,919
  • Since beginning of last month:
    • Site-wide: 171,234

The proteomic landscape of centromeric chromatin reveals an essential role for the Ctf19CCAN complex in meiotic kinetochore assembly

cell biology more details view paper
  • Downloaded 609 times
  • Download rankings, all-time:
    • Site-wide: 82,302
    • In cell biology: 3,672
  • Year to date:
    • Site-wide: 126,514
  • Since beginning of last month:
    • Site-wide: 99,540

Proteomics Using Protease Alternatives to Trypsin Benefits from Sequential Digestion with Trypsin

biochemistry more details view paper
  • Downloaded 567 times
  • Download rankings, all-time:
    • Site-wide: 90,142
    • In biochemistry: 2,630
  • Year to date:
    • Site-wide: 14,338
  • Since beginning of last month:
    • Site-wide: 127,658

STING Nuclear Partners Contribute to Innate Immune Signalling Responses

immunology more details view paper
  • Downloaded 563 times
  • Download rankings, all-time:
    • Site-wide: 90,960
    • In immunology: 2,943
  • Year to date:
    • Site-wide: 185,610
  • Since beginning of last month:
    • Site-wide: 168,627

Blind testing cross-linking/mass spectrometry under the auspices of the 11th critical assessment of methods of protein structure prediction (CASP11)

biochemistry more details view paper
  • Downloaded 552 times
  • Download rankings, all-time:
    • Site-wide: 93,053
    • In biochemistry: 2,587
  • Year to date:
    • Site-wide: 163,107
  • Since beginning of last month:
    • Site-wide: 206,408

Structure and mechanism of a novel cytomegaloviral DCAF mediating interferon antagonism

biochemistry more details view paper
  • Downloaded 543 times
  • Download rankings, all-time:
    • Site-wide: 95,056
    • In biochemistry: 2,859
  • Year to date:
    • Site-wide: 14,650
  • Since beginning of last month:
    • Site-wide: 16,859

treeClust improves protein co-regulation analysis due to robust selectivity for close linear relationships

systems biology more details view paper
  • Downloaded 539 times
  • Download rankings, all-time:
    • Site-wide: 95,751
    • In systems biology: 1,981
  • Year to date:
    • Site-wide: 168,107
  • Since beginning of last month:
    • Site-wide: 181,083

Improved peptide backbone fragmentation is the primary advantage of MS-cleavable crosslinkers

systems biology more details view paper
  • Downloaded 520 times
  • Download rankings, all-time:
    • Site-wide: 99,995
    • In systems biology: 2,086
  • Year to date:
    • Site-wide: 83,180
  • Since beginning of last month:
    • Site-wide: 171,014

Proteasome-dependent truncation of the negative heterochromatin regulator Epe1 mediates antifungal resistance

cell biology more details view paper
  • Downloaded 489 times
  • Download rankings, all-time:
    • Site-wide: 107,221
    • In cell biology: 5,091
  • Year to date:
    • Site-wide: 26,889
  • Since beginning of last month:
    • Site-wide: 135,948

Substrate Specificity of the TRAMP Nuclear Surveillance Complexes

molecular biology more details view paper
  • Downloaded 474 times
  • Download rankings, all-time:
    • Site-wide: 110,764
    • In molecular biology: 3,254
  • Year to date:
    • Site-wide: 114,228
  • Since beginning of last month:
    • Site-wide: 160,973

Structural Basis for CAL1-Mediated Centromere Maintenance

biochemistry more details view paper
  • Downloaded 463 times
  • Download rankings, all-time:
    • Site-wide: 113,281
    • In biochemistry: 3,267
  • Year to date:
    • Site-wide: 169,871
  • Since beginning of last month:
    • Site-wide: 202,844

Structural Basis for Mis18 Complex Assembly: Implications for Centromere Maintenance

cell biology more details view paper
  • Downloaded 463 times
  • Download rankings, all-time:
    • Site-wide: 113,393
    • In cell biology: 5,481
  • Year to date:
    • Site-wide: 65,549
  • Since beginning of last month:
    • Site-wide: 25,795

Fission yeast NDR/LATS kinase Orb6 regulates exocytosis via phosphorylation of exocyst complex

cell biology more details view paper
  • Downloaded 452 times
  • Download rankings, all-time:
    • Site-wide: 116,012
    • In cell biology: 5,370
  • Year to date:
    • Site-wide: 196,076
  • Since beginning of last month:
    • Site-wide: 150,851

Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore

cell biology more details view paper
  • Downloaded 449 times
  • Download rankings, all-time:
    • Site-wide: 116,828
    • In cell biology: 5,434
  • Year to date:
    • Site-wide: 106,050
  • Since beginning of last month:
    • Site-wide: 147,448

Architecture of the Mto1/2 microtubule nucleation complex

cell biology more details view paper
  • Downloaded 436 times
  • Download rankings, all-time:
    • Site-wide: 120,152
    • In cell biology: 5,625
  • Year to date:
    • Site-wide: 135,811
  • Since beginning of last month:
    • Site-wide: 118,460

Retention Time Prediction Using Neural Networks Increases Identifications in Crosslinking Mass Spectrometry

bioinformatics more details view paper
  • Downloaded 435 times
  • Download rankings, all-time:
    • Site-wide: 120,463
    • In bioinformatics: 10,020
  • Year to date:
    • Site-wide: 148,265
  • Since beginning of last month:
    • Site-wide: 166,894

Hap2-Ino80 facilitated transcription promotes de novo establishment of CENP-A chromatin

molecular biology more details view paper
  • Downloaded 425 times
  • Download rankings, all-time:
    • Site-wide: 123,313
    • In molecular biology: 3,607
  • Year to date:
    • Site-wide: 137,432
  • Since beginning of last month:
    • Site-wide: 190,090

The C-terminal helix of BubR1 is essential for CENP-E-dependent chromosome alignment

cell biology more details view paper
  • Downloaded 422 times
  • Download rankings, all-time:
    • Site-wide: 124,187
    • In cell biology: 5,758
  • Year to date:
    • Site-wide: 181,841
  • Since beginning of last month:
    • Site-wide: 190,052

AI-guided cryo-EM probes a thermophilic cell-free system with succinyl-coA manufacturing capability

biochemistry more details view paper
  • Downloaded 418 times
  • Download rankings, all-time:
    • Site-wide: 125,218
    • In biochemistry: 3,960
  • Year to date:
    • Site-wide: 21,070
  • Since beginning of last month:
    • Site-wide: 31,368

Mapping the invisible chromatin transactions of prophase chromosome remodelling

cell biology more details view paper
  • Downloaded 409 times
  • Download rankings, all-time:
    • Site-wide: 127,805
    • In cell biology: 5,905
  • Year to date:
    • Site-wide: 199,461
  • Since beginning of last month:
    • Site-wide: 169,012

Non-covalently-associated peptides are observed during liquid chromatography-mass spectrometry and affect crosslink analyses

bioinformatics more details view paper
  • Downloaded 396 times
  • Download rankings, all-time:
    • Site-wide: 131,473
    • In bioinformatics: 10,603
  • Year to date:
    • Site-wide: 176,176
  • Since beginning of last month:
    • Site-wide: 179,728

Isolation of protein N-terminal peptides by charge-mediated position- elective enrichment using strong cation exchange chromatography

cell biology more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 137,217
    • In cell biology: 6,465
  • Year to date:
    • Site-wide: 54,610
  • Since beginning of last month:
    • Site-wide: 81,473

Non-redundant functions of H2A.Z.1 and H2A.Z.2 in chromosome segregation and cell cycle progression

cell biology more details view paper
  • Downloaded 349 times
  • Download rankings, all-time:
    • Site-wide: 145,270
    • In cell biology: 6,783
  • Year to date:
    • Site-wide: 112,888
  • Since beginning of last month:
    • Site-wide: 193,404

False discovery rate estimation and heterobifunctional cross-linkers

bioinformatics more details view paper
  • Downloaded 348 times
  • Download rankings, all-time:
    • Site-wide: 145,682
    • In bioinformatics: 11,420
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 210,288

Evolving a mitigation of the stress response pathway to change the basic chemistry of life

synthetic biology more details view paper
  • Downloaded 342 times
  • Download rankings, all-time:
    • Site-wide: 147,523
    • In synthetic biology: 1,378
  • Year to date:
    • Site-wide: 117,949
  • Since beginning of last month:
    • Site-wide: 113,319

Ultraviolet Photodissociation of tryptic peptide backbones at 213 nm

systems biology more details view paper
  • Downloaded 337 times
  • Download rankings, all-time:
    • Site-wide: 149,048
    • In systems biology: 2,999
  • Year to date:
    • Site-wide: 115,409
  • Since beginning of last month:
    • Site-wide: 160,441

Megadalton-sized dityrosine aggregates of α-synuclein retain high degrees of structural disorder and internal dynamics.

biophysics more details view paper
  • Downloaded 331 times
  • Download rankings, all-time:
    • Site-wide: 150,886
    • In biophysics: 5,699
  • Year to date:
    • Site-wide: 200,504
  • Since beginning of last month:
    • Site-wide: 211,843

The phospho-docking protein 14-3-3 regulates microtubule-associated proteins in oocytes including the chromosomal passenger Borealin

cell biology more details view paper
  • Downloaded 272 times
  • Download rankings, all-time:
    • Site-wide: 168,748
    • In cell biology: 7,856
  • Year to date:
    • Site-wide: 117,623
  • Since beginning of last month:
    • Site-wide: 195,466

The SPARC complex defines RNAPII promoters in Trypanosoma brucei

molecular biology more details view paper
  • Downloaded 199 times
  • Download rankings, all-time:
    • Site-wide: 188,120
    • In molecular biology: 5,646
  • Year to date:
    • Site-wide: 190,519
  • Since beginning of last month:
    • Site-wide: 194,317

DomainRank: Improving Biological Data Sets With Domain Knowledge and Google's PageRank

bioinformatics more details view paper
  • Downloaded 84 times
  • Download rankings, all-time:
    • Site-wide: 210,692
    • In bioinformatics: 15,129
  • Year to date:
    • Site-wide: 71,268
  • Since beginning of last month:
    • Site-wide: 210,875

PanLingua

News