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Author: Raphael Gottardo

Rankings

  • All-time downloads: 41,343 (rank: 3,641 )
  • Categories:
    • allergy and immunology: 288 (rank: 1,828 (tie) )
    • bioinformatics: 8,561 (rank: 1,055 )
    • genomics: 23,470 (rank: 433 )
    • immunology: 8,658 (rank: 769 )
    • infectious diseases: 366 (rank: 33,582 (tie) )

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Preprints

Integrated analysis of multimodal single-cell data

genomics more details view paper
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    • Site-wide: 421
    • In genomics: 20
  • Year to date:
    • Site-wide: 128
  • Since beginning of last month:
    • Site-wide: 103

Orchestrating Single-Cell Analysis with Bioconductor

genomics more details view paper
  • Downloaded 4,497 times
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    • Site-wide: 2,392
    • In genomics: 254
  • Year to date:
    • Site-wide: 1,945
  • Since beginning of last month:
    • Site-wide: 1,067

A targeted multi-omic analysis approach measures protein expression and low abundance transcripts on the single cell level

immunology more details view paper
  • Downloaded 2,953 times
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    • Site-wide: 4,358
    • In immunology: 130
  • Year to date:
    • Site-wide: 15,020
  • Since beginning of last month:
    • Site-wide: 10,094

Infinity Flow: High-throughput single-cell quantification of 100s of proteins using conventional flow cytometry and machine learning

immunology more details view paper
  • Downloaded 2,946 times
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    • Site-wide: 4,374
    • In immunology: 131
  • Year to date:
    • Site-wide: 2,087
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    • Site-wide: 2,847

New interpretable machine learning method for single-cell data reveals correlates of clinical response to cancer immunotherapy

bioinformatics more details view paper
  • Downloaded 2,898 times
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    • Site-wide: 4,479
    • In bioinformatics: 458
  • Year to date:
    • Site-wide: 9,206
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    • Site-wide: 20,871

Multiomic Immunophenotyping of COVID-19 Patients Reveals Early Infection Trajectories

immunology more details view paper
  • Downloaded 2,457 times
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    • Site-wide: 5,732
    • In immunology: 173
  • Year to date:
    • Site-wide: 6,268
  • Since beginning of last month:
    • Site-wide: 10,352

Single-cell analysis of chromatin silencing programs in developmental and tumor progression

genomics more details view paper
  • Downloaded 2,375 times
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    • Site-wide: 6,027
    • In genomics: 677
  • Year to date:
    • Site-wide: 1,617
  • Since beginning of last month:
    • Site-wide: 1,743

BayesSpace enables the robust characterization of spatial gene expression architecture in tissue sections at increased resolution

bioinformatics more details view paper
  • Downloaded 1,603 times
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    • Site-wide: 10,744
    • In bioinformatics: 1,308
  • Year to date:
    • Site-wide: 3,687
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    • Site-wide: 4,199

MAST: A flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA-seq data.

bioinformatics more details view paper
  • Downloaded 1,110 times
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    • Site-wide: 18,607
    • In bioinformatics: 2,218
  • Year to date:
    • Site-wide: 122,682
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    • Site-wide: 125,713

Modeling bi-modality improves characterization of cell cycle on gene expression in single cells

bioinformatics more details view paper
  • Downloaded 961 times
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    • Site-wide: 22,934
    • In bioinformatics: 2,694
  • Year to date:
    • Site-wide: 115,968
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    • Site-wide: 135,165

cytometree: a binary tree algorithm for automatic gating in cytometry analysis

bioinformatics more details view paper
  • Downloaded 728 times
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    • Site-wide: 33,931
    • In bioinformatics: 3,779
  • Year to date:
    • Site-wide: 86,743
  • Since beginning of last month:
    • Site-wide: 81,664

DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis.

bioinformatics more details view paper
  • Downloaded 706 times
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    • Site-wide: 35,373
    • In bioinformatics: 3,914
  • Year to date:
    • Site-wide: 94,478
  • Since beginning of last month:
    • Site-wide: 103,256

Reply to "A discriminative learning approach to differential expression analysis for single-cell RNA-seq"

bioinformatics more details view paper
  • Downloaded 555 times
  • Download rankings, all-time:
    • Site-wide: 48,077
    • In bioinformatics: 5,005
  • Year to date:
    • Site-wide: 119,673
  • Since beginning of last month:
    • Site-wide: 96,907

Heterogeneous immunological recovery trajectories revealed in post-acute COVID-19

infectious diseases more details view paper
  • Downloaded 366 times
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    • Site-wide: 74,593
    • In infectious diseases: 3,318
  • Year to date:
    • Site-wide: 6,309
  • Since beginning of last month:
    • Site-wide: 5,569

CD32+ and PD-1+ Lymph Node CD4 T Cells Support Persistent HIV-1 Transcription in Treated Aviremic Individuals

immunology more details view paper
  • Downloaded 302 times
  • Download rankings, all-time:
    • Site-wide: 87,339
    • In immunology: 2,474
  • Year to date:
    • Site-wide: 129,141
  • Since beginning of last month:
    • Site-wide: 123,261

A differential regulatory T cell signature distinguishes the immune landscape of COVID-19 hospitalized patients from those hospitalized with other respiratory viral infections

allergy and immunology more details view paper
  • Downloaded 288 times
  • Download rankings, all-time:
    • Site-wide: 90,208
    • In allergy and immunology: 121
  • Year to date:
    • Site-wide: 8,945
  • Since beginning of last month:
    • Site-wide: 3,215

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