Rxivist logo

Author: Raphael Gottardo

Rankings

  • All-time downloads: 52,622 (rank: 3,736 )
  • Categories:
    • allergy and immunology: 721 (rank: 1,665 (tie) )
    • bioinformatics: 10,685 (rank: 929 )
    • cancer biology: 122 (rank: 41,612 (tie) )
    • genomics: 28,966 (rank: 422 )
    • hiv aids: 115 (rank: 1,625 (tie) )
    • immunology: 10,642 (rank: 1,019 )
    • infectious diseases: 883 (rank: 32,041 (tie) )
    • systems biology: 488 (rank: 10,364 (tie) )

Downloads per author, site-wide

Preprints

Integrated analysis of multimodal single-cell data

genomics more details view paper
  • Downloaded 21,025 times
  • Download rankings, all-time:
    • Site-wide: 425
    • In genomics: 15
  • Year to date:
    • Site-wide: 242
  • Since beginning of last month:
    • Site-wide: 1,745

Orchestrating Single-Cell Analysis with Bioconductor

genomics more details view paper
  • Downloaded 5,039 times
  • Download rankings, all-time:
    • Site-wide: 2,657
    • In genomics: 246
  • Year to date:
    • Site-wide: 3,356
  • Since beginning of last month:
    • Site-wide: 18,738

Infinity Flow: High-throughput single-cell quantification of 100s of proteins using conventional flow cytometry and machine learning

immunology more details view paper
  • Downloaded 4,109 times
  • Download rankings, all-time:
    • Site-wide: 3,502
    • In immunology: 126
  • Year to date:
    • Site-wide: 2,023
  • Since beginning of last month:
    • Site-wide: 6,419

New interpretable machine learning method for single-cell data reveals correlates of clinical response to cancer immunotherapy

bioinformatics more details view paper
  • Downloaded 3,422 times
  • Download rankings, all-time:
    • Site-wide: 4,539
    • In bioinformatics: 424
  • Year to date:
    • Site-wide: 7,519
  • Since beginning of last month:
    • Site-wide: 11,207

A targeted multi-omic analysis approach measures protein expression and low abundance transcripts on the single cell level

immunology more details view paper
  • Downloaded 3,101 times
  • Download rankings, all-time:
    • Site-wide: 5,223
    • In immunology: 191
  • Year to date:
    • Site-wide: 28,179
  • Since beginning of last month:
    • Site-wide: 91,394

Single-cell analysis of chromatin silencing programs in developmental and tumor progression

genomics more details view paper
  • Downloaded 2,902 times
  • Download rankings, all-time:
    • Site-wide: 5,772
    • In genomics: 579
  • Year to date:
    • Site-wide: 3,080
  • Since beginning of last month:
    • Site-wide: 20,236

Multiomic Immunophenotyping of COVID-19 Patients Reveals Early Infection Trajectories

immunology more details view paper
  • Downloaded 2,797 times
  • Download rankings, all-time:
    • Site-wide: 6,082
    • In immunology: 224
  • Year to date:
    • Site-wide: 9,230
  • Since beginning of last month:
    • Site-wide: 73,144

BayesSpace enables the robust characterization of spatial gene expression architecture in tissue sections at increased resolution

bioinformatics more details view paper
  • Downloaded 2,430 times
  • Download rankings, all-time:
    • Site-wide: 7,478
    • In bioinformatics: 795
  • Year to date:
    • Site-wide: 3,432
  • Since beginning of last month:
    • Site-wide: 15,878

MAST: A flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA-seq data.

bioinformatics more details view paper
  • Downloaded 1,155 times
  • Download rankings, all-time:
    • Site-wide: 22,913
    • In bioinformatics: 2,575
  • Year to date:
    • Site-wide: 147,311
  • Since beginning of last month:
    • Site-wide: 156,219

Modeling bi-modality improves characterization of cell cycle on gene expression in single cells

bioinformatics more details view paper
  • Downloaded 980 times
  • Download rankings, all-time:
    • Site-wide: 29,380
    • In bioinformatics: 3,254
  • Year to date:
    • Site-wide: 161,436
  • Since beginning of last month:
    • Site-wide: 164,420

DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis.

bioinformatics more details view paper
  • Downloaded 799 times
  • Download rankings, all-time:
    • Site-wide: 39,571
    • In bioinformatics: 4,214
  • Year to date:
    • Site-wide: 97,439
  • Since beginning of last month:
    • Site-wide: 46,812

cytometree: a binary tree algorithm for automatic gating in cytometry analysis

bioinformatics more details view paper
  • Downloaded 773 times
  • Download rankings, all-time:
    • Site-wide: 41,435
    • In bioinformatics: 4,366
  • Year to date:
    • Site-wide: 133,393
  • Since beginning of last month:
    • Site-wide: 149,180

A differential regulatory T cell signature distinguishes the immune landscape of COVID-19 hospitalized patients from those hospitalized with other respiratory viral infections

allergy and immunology more details view paper
  • Downloaded 721 times
  • Download rankings, all-time:
    • Site-wide: 45,816
    • In allergy and immunology: 105
  • Year to date:
    • Site-wide: 8,978
  • Since beginning of last month:
    • Site-wide: 16,789

Heterogeneous immunological recovery trajectories revealed in post-acute COVID-19

infectious diseases more details view paper
  • Downloaded 699 times
  • Download rankings, all-time:
    • Site-wide: 47,852
    • In infectious diseases: 3,237
  • Year to date:
    • Site-wide: 9,410
  • Since beginning of last month:
    • Site-wide: 26,576

Reply to "A discriminative learning approach to differential expression analysis for single-cell RNA-seq"

bioinformatics more details view paper
  • Downloaded 631 times
  • Download rankings, all-time:
    • Site-wide: 54,977
    • In bioinformatics: 5,463
  • Year to date:
    • Site-wide: 119,324
  • Since beginning of last month:
    • Site-wide: 121,185

Superscan: Supervised Single-Cell Annotation

bioinformatics more details view paper
  • Downloaded 495 times
  • Download rankings, all-time:
    • Site-wide: 73,982
    • In bioinformatics: 6,865
  • Year to date:
    • Site-wide: 16,106
  • Since beginning of last month:
    • Site-wide: 17,400

An innate immune activation state prior to vaccination predicts responsiveness to multiple vaccines

systems biology more details view paper
  • Downloaded 397 times
  • Download rankings, all-time:
    • Site-wide: 92,864
    • In systems biology: 2,055
  • Year to date:
    • Site-wide: 22,720
  • Since beginning of last month:
    • Site-wide: 6,528

CD32+ and PD-1+ Lymph Node CD4 T Cells Support Persistent HIV-1 Transcription in Treated Aviremic Individuals

immunology more details view paper
  • Downloaded 347 times
  • Download rankings, all-time:
    • Site-wide: 104,497
    • In immunology: 3,128
  • Year to date:
    • Site-wide: 149,108
  • Since beginning of last month:
    • Site-wide: 151,699

A baseline transcriptional signature associates with clinical malaria risk in RTS,S/AS01-vaccinated African children

infectious diseases more details view paper
  • Downloaded 184 times
  • Download rankings, all-time:
    • Site-wide: 146,104
    • In infectious diseases: 6,016
  • Year to date:
    • Site-wide: 64,141
  • Since beginning of last month:
    • Site-wide: 48,138

A faithful in vivo model of human macrophages in metastatic melanoma

immunology more details view paper
  • Downloaded 181 times
  • Download rankings, all-time:
    • Site-wide: 146,659
    • In immunology: 4,436
  • Year to date:
    • Site-wide: 65,382
  • Since beginning of last month:
    • Site-wide: 113,659

Global and context-specific transcriptional consequences of oncogenic Fbw7 mutations

cancer biology more details view paper
  • Downloaded 122 times
  • Download rankings, all-time:
    • Site-wide: 157,257
    • In cancer biology: 4,845
  • Year to date:
    • Site-wide: 97,370
  • Since beginning of last month:
    • Site-wide: 11,870

Optimizing clinical dosing of combination broadly neutralizing antibodies for HIV prevention

hiv aids more details view paper
  • Downloaded 115 times
  • Download rankings, all-time:
    • Site-wide: 158,284
    • In hiv aids: 189
  • Year to date:
    • Site-wide: 102,715
  • Since beginning of last month:
    • Site-wide: 72,083

T helper 2 transcriptional profile predicts single-cell HIV envelope-specific polyfunctional CD4+ T cells correlated with reduced risk of infection in RV144 trial

immunology more details view paper
  • Downloaded 107 times
  • Download rankings, all-time:
    • Site-wide: 159,248
    • In immunology: 4,880
  • Year to date:
    • Site-wide: 108,493
  • Since beginning of last month:
    • Site-wide: 108,482

The Immune Signatures Data Resource: A compendium of systems vaccinology datasets

systems biology more details view paper
  • Downloaded 91 times
  • Download rankings, all-time:
    • Site-wide: 161,050
    • In systems biology: 3,287
  • Year to date:
    • Site-wide: 122,418
  • Since beginning of last month:
    • Site-wide: 19,438

PanLingua

News