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Author: Morten Nielsen

  • ORCiD: http://orcid.org/0000-0001-7885-4311
  • Most recently observed institution: Department of Health Technology, Technical University of Denmark. Instituto de Investigaciones Biotecnologicas, Universidad Nacional de San Martin

Rankings

  • All-time downloads: 93,795 (rank: 1,153 )
  • Categories:
    • bioinformatics: 10,348 (rank: 639 )
    • immunology: 83,447 (rank: 1 )

Downloads per author, site-wide

Preprints

Integral use of immunopeptidomics and immunoinformatics for the characterization of antigen presentation and rational identification of BoLA-DR-presented peptides and epitopes

bioinformatics more details view paper

No download data for this paper yet.

TCRMatch: Predicting T-cell receptor specificity based on sequence similarity to previously characterized receptors

immunology more details view paper

No download data for this paper yet.

Robust T cell immunity in convalescent individuals with asymptomatic or mild COVID-19

immunology more details view paper
  • Downloaded 79,267 times
  • Download rankings, all-time:
    • Site-wide: 56
    • In immunology: 1
  • Year to date:
    • Site-wide: 143
  • Since beginning of last month:
    • Site-wide: 142

NetTCR: sequence-based prediction of TCR binding to peptide-MHC complexes using convolutional neural networks

bioinformatics more details view paper
  • Downloaded 4,102 times
  • Download rankings, all-time:
    • Site-wide: 2,238
    • In bioinformatics: 209
  • Year to date:
    • Site-wide: 3,139
  • Since beginning of last month:
    • Site-wide: 5,088

NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

bioinformatics more details view paper
  • Downloaded 2,093 times
  • Download rankings, all-time:
    • Site-wide: 5,991
    • In bioinformatics: 741
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 112,727

NetSurfP-2.0: improved prediction of protein structural features by integrated deep learning

bioinformatics more details view paper
  • Downloaded 1,972 times
  • Download rankings, all-time:
    • Site-wide: 6,530
    • In bioinformatics: 812
  • Year to date:
    • Site-wide: 4,278
  • Since beginning of last month:
    • Site-wide: 10,389

Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data

bioinformatics more details view paper
  • Downloaded 867 times
  • Download rankings, all-time:
    • Site-wide: 22,320
    • In bioinformatics: 2,719
  • Year to date:
    • Site-wide: 6,404
  • Since beginning of last month:
    • Site-wide: 19,482

SARS-CoV-2 genome-wide mapping of CD8 T cell recognition reveals strong immunodominance and substantial CD8 T cell activation in COVID-19 patients

immunology more details view paper
  • Downloaded 865 times
  • Download rankings, all-time:
    • Site-wide: 22,368
    • In immunology: 615
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 7,574

Footprints of antigen processing boost MHC class II natural ligand binding predictions

immunology more details view paper
  • Downloaded 684 times
  • Download rankings, all-time:
    • Site-wide: 31,043
    • In immunology: 831
  • Year to date:
    • Site-wide: 35,168
  • Since beginning of last month:
    • Site-wide: 83,487

Benchmarking predictions of MHC class I restricted T cell epitopes

immunology more details view paper
  • Downloaded 674 times
  • Download rankings, all-time:
    • Site-wide: 31,666
    • In immunology: 847
  • Year to date:
    • Site-wide: 11,205
  • Since beginning of last month:
    • Site-wide: 36,895

NNAlign_MA; MHC peptidome deconvolution for accurate MHC binding motif characterization and improved T cell epitope predictions

bioinformatics more details view paper
  • Downloaded 652 times
  • Download rankings, all-time:
    • Site-wide: 33,134
    • In bioinformatics: 3,769
  • Year to date:
    • Site-wide: 28,118
  • Since beginning of last month:
    • Site-wide: 50,691

Computational Tools for the Identification and Interpretation of Sequence Motifs in Immunopeptidomes

bioinformatics more details view paper
  • Downloaded 544 times
  • Download rankings, all-time:
    • Site-wide: 41,633
    • In bioinformatics: 4,503
  • Year to date:
    • Site-wide: 46,139
  • Since beginning of last month:
    • Site-wide: 107,627

A systematic, unbiased mapping of CD8+ and CD4+ T cell epitopes in Yellow Fever vaccinees

immunology more details view paper
  • Downloaded 494 times
  • Download rankings, all-time:
    • Site-wide: 46,710
    • In immunology: 1,254
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 37,754

Sampling SARS-CoV-2 proteomes for predicted CD8 T-cell epitopes as a tool for understanding immunogenic breadth and rational vaccine design

immunology more details view paper
  • Downloaded 402 times
  • Download rankings, all-time:
    • Site-wide: 58,325
    • In immunology: 1,549
  • Year to date:
    • Site-wide: 26,934
  • Since beginning of last month:
    • Site-wide: 72,113

Characterisation of antigenic MHC Class I-restricted T cell epitopes in the glycoprotein of Ebolavirus

immunology more details view paper
  • Downloaded 315 times
  • Download rankings, all-time:
    • Site-wide: 72,429
    • In immunology: 1,943
  • Year to date:
    • Site-wide: 52,425
  • Since beginning of last month:
    • Site-wide: 67,718

HLA-class II specificity assessed by high-density peptide microarray interactions

immunology more details view paper
  • Downloaded 275 times
  • Download rankings, all-time:
    • Site-wide: 80,102
    • In immunology: 2,160
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: 112,517

Improved prediction of Bovine Leucocyte Antigens (BoLA) presented ligands by use of MS eluted ligands and in-vitro binding data; impact for the identification T cell epitopes

immunology more details view paper
  • Downloaded 252 times
  • Download rankings, all-time:
    • Site-wide: 84,875
    • In immunology: 2,313
  • Year to date:
    • Site-wide: 64,941
  • Since beginning of last month:
    • Site-wide: 73,550

Utilizing Computational Machine Learning Tools to Understand Immunogenic Breadth in the Context of a CD8 T-Cell Mediated HIV Response

immunology more details view paper
  • Downloaded 219 times
  • Download rankings, all-time:
    • Site-wide: 91,757
    • In immunology: 2,514
  • Year to date:
    • Site-wide: 48,466
  • Since beginning of last month:
    • Site-wide: 41,632

Combined assessment of MHC binding and antigen expression improves T cell epitope predictions

bioinformatics more details view paper
  • Downloaded 118 times
  • Download rankings, all-time:
    • Site-wide: 111,269
    • In bioinformatics: 9,193
  • Year to date:
    • Site-wide: 23,703
  • Since beginning of last month:
    • Site-wide: 12,228

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