Rxivist logo

Author: Morten Nielsen

  • ORCiD: http://orcid.org/0000-0001-7885-4311
  • Most recently observed institution: Department of Health Technology, Section of Bioinformatics, Technical University of Denmark, Kongens Lyngby, Denmark

Rankings

  • All-time downloads: 88,876 (rank: 439 out of 428,118)
  • Categories:
    • bioinformatics: 9,765 (rank: 652 out of 36,286)
    • immunology: 79,111 (rank: 1 out of 26,612)

Downloads per author, site-wide

Preprints

Robust T cell immunity in convalescent individuals with asymptomatic or mild COVID-19

immunology more details view paper
  • Downloaded 75,608 times
  • Download rankings, all-time:
    • Site-wide: 17 out of 101,349
    • In immunology: 1 out of 3,159
  • Year to date:
    • Site-wide: 13 out of 101,349
  • Since beginning of last month:
    • Site-wide: 13 out of 101,349

NetTCR: sequence-based prediction of TCR binding to peptide-MHC complexes using convolutional neural networks

bioinformatics more details view paper
  • Downloaded 3,877 times
  • Download rankings, all-time:
    • Site-wide: 1,378 out of 101,349
    • In bioinformatics: 224 out of 9,295
  • Year to date:
    • Site-wide: 2,029 out of 101,349
  • Since beginning of last month:
    • Site-wide: 4,415 out of 101,349

NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

bioinformatics more details view paper
  • Downloaded 2,077 times
  • Download rankings, all-time:
    • Site-wide: 3,956 out of 101,349
    • In bioinformatics: 703 out of 9,295
  • Year to date:
    • Site-wide: 17,705 out of 101,349
  • Since beginning of last month:
    • Site-wide: 42,804 out of 101,349

NetSurfP-2.0: improved prediction of protein structural features by integrated deep learning

bioinformatics more details view paper
  • Downloaded 1,869 times
  • Download rankings, all-time:
    • Site-wide: 4,750 out of 101,349
    • In bioinformatics: 847 out of 9,295
  • Year to date:
    • Site-wide: 9,008 out of 101,349
  • Since beginning of last month:
    • Site-wide: 7,960 out of 101,349

Improved prediction of MHC II antigen presentation through integration and motif deconvolution of mass spectrometry MHC eluted ligand data

bioinformatics more details view paper
  • Downloaded 785 times
  • Download rankings, all-time:
    • Site-wide: 19,708 out of 101,349
    • In bioinformatics: 2,894 out of 9,295
  • Year to date:
    • Site-wide: 6,791 out of 101,349
  • Since beginning of last month:
    • Site-wide: 13,598 out of 101,349

Footprints of antigen processing boost MHC class II natural ligand binding predictions

immunology more details view paper
  • Downloaded 656 times
  • Download rankings, all-time:
    • Site-wide: 25,585 out of 101,349
    • In immunology: 746 out of 3,159
  • Year to date:
    • Site-wide: 61,000 out of 101,349
  • Since beginning of last month:
    • Site-wide: 51,238 out of 101,349

NNAlign_MA; MHC peptidome deconvolution for accurate MHC binding motif characterization and improved T cell epitope predictions

bioinformatics more details view paper
  • Downloaded 622 times
  • Download rankings, all-time:
    • Site-wide: 27,535 out of 101,349
    • In bioinformatics: 3,714 out of 9,295
  • Year to date:
    • Site-wide: 30,216 out of 101,349
  • Since beginning of last month:
    • Site-wide: 31,582 out of 101,349

Benchmarking predictions of MHC class I restricted T cell epitopes

immunology more details view paper
  • Downloaded 609 times
  • Download rankings, all-time:
    • Site-wide: 28,409 out of 101,349
    • In immunology: 819 out of 3,159
  • Year to date:
    • Site-wide: 24,276 out of 101,349
  • Since beginning of last month:
    • Site-wide: 43,874 out of 101,349

Computational Tools for the Identification and Interpretation of Sequence Motifs in Immunopeptidomes

bioinformatics more details view paper
  • Downloaded 535 times
  • Download rankings, all-time:
    • Site-wide: 33,554 out of 101,349
    • In bioinformatics: 4,285 out of 9,295
  • Year to date:
    • Site-wide: 79,026 out of 101,349
  • Since beginning of last month:
    • Site-wide: 81,555 out of 101,349

A systematic, unbiased mapping of CD8+ and CD4+ T cell epitopes in Yellow Fever vaccinees

immunology more details view paper
  • Downloaded 454 times
  • Download rankings, all-time:
    • Site-wide: 41,060 out of 101,349
    • In immunology: 1,179 out of 3,159
  • Year to date:
    • Site-wide: 8,955 out of 101,349
  • Since beginning of last month:
    • Site-wide: 17,284 out of 101,349

SARS-CoV-2 genome-wide mapping of CD8 T cell recognition reveals strong immunodominance and substantial CD8 T cell activation in COVID-19 patients

immunology more details view paper
  • Downloaded 439 times
  • Download rankings, all-time:
    • Site-wide: 42,571 out of 101,349
    • In immunology: 1,220 out of 3,159
  • Year to date:
    • Site-wide: 9,439 out of 101,349
  • Since beginning of last month:
    • Site-wide: 689 out of 101,349

Sampling SARS-CoV-2 proteomes for predicted CD8 T-cell epitopes as a tool for understanding immunogenic breadth and rational vaccine design

immunology more details view paper
  • Downloaded 355 times
  • Download rankings, all-time:
    • Site-wide: 53,096 out of 101,349
    • In immunology: 1,519 out of 3,159
  • Year to date:
    • Site-wide: 13,028 out of 101,349
  • Since beginning of last month:
    • Site-wide: 11,595 out of 101,349

Characterisation of antigenic MHC Class I-restricted T cell epitopes in the glycoprotein of Ebolavirus

immunology more details view paper
  • Downloaded 295 times
  • Download rankings, all-time:
    • Site-wide: 62,071 out of 101,349
    • In immunology: 1,766 out of 3,159
  • Year to date:
    • Site-wide: 85,058 out of 101,349
  • Since beginning of last month:
    • Site-wide: 92,428 out of 101,349

HLA-class II specificity assessed by high-density peptide microarray interactions

immunology more details view paper
  • Downloaded 267 times
  • Download rankings, all-time:
    • Site-wide: 66,812 out of 101,349
    • In immunology: 1,926 out of 3,159
  • Year to date:
    • Site-wide: 19,724 out of 101,349
  • Since beginning of last month:
    • Site-wide: 60,708 out of 101,349

Improved prediction of Bovine Leucocyte Antigens (BoLA) presented ligands by use of MS eluted ligands and in-vitro binding data; impact for the identification T cell epitopes

immunology more details view paper
  • Downloaded 241 times
  • Download rankings, all-time:
    • Site-wide: 71,425 out of 101,349
    • In immunology: 2,077 out of 3,159
  • Year to date:
    • Site-wide: 95,225 out of 101,349
  • Since beginning of last month:
    • Site-wide: 92,547 out of 101,349

Utilizing Computational Machine Learning Tools to Understand Immunogenic Breadth in the Context of a CD8 T-Cell Mediated HIV Response

immunology more details view paper
  • Downloaded 187 times
  • Download rankings, all-time:
    • Site-wide: 81,131 out of 101,349
    • In immunology: 2,407 out of 3,159
  • Year to date:
    • Site-wide: 32,064 out of 101,349
  • Since beginning of last month:
    • Site-wide: 25,790 out of 101,349

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News

  • 20 Oct 2020: Support for sorting preprints using Twitter activity has been removed, at least temporarily, until a new source of social media activity data becomes available.
  • 18 Dec 2019: We're pleased to announce PanLingua, a new tool that enables you to search for machine-translated bioRxiv preprints using more than 100 different languages.
  • 21 May 2019: PLOS Biology has published a community page about Rxivist.org and its design.
  • 10 May 2019: The paper analyzing the Rxivist dataset has been published at eLife.
  • 1 Mar 2019: We now have summary statistics about bioRxiv downloads and submissions.
  • 8 Feb 2019: Data from Altmetric is now available on the Rxivist details page for every preprint. Look for the "donut" under the download metrics.
  • 30 Jan 2019: preLights has featured the Rxivist preprint and written about our findings.
  • 22 Jan 2019: Nature just published an article about Rxivist and our data.
  • 13 Jan 2019: The Rxivist preprint is live!