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Author: Paul Flicek

Rankings

  • All-time downloads: 49,478 (rank: 2,656 )
  • Categories:
    • bioinformatics: 5,488 (rank: 2,010 )
    • cancer biology: 2,204 (rank: 2,158 (tie) )
    • evolutionary biology: 397 (rank: 15,221 (tie) )
    • genetics: 3,638 (rank: 4,632 )
    • genomics: 35,307 (rank: 236 )
    • immunology: 509 (rank: 15,136 (tie) )
    • neuroscience: 1,935 (rank: 10,503 (tie) )

Downloads per author, site-wide

Preprints

High coverage whole genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios

genomics more details view paper

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Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
  • Downloaded 8,336 times
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    • Site-wide: 944
    • In genomics: 84
  • Year to date:
    • Site-wide: 40,986
  • Since beginning of last month:
    • Site-wide: 40,986

Towards complete and error-free genome assemblies of all vertebrate species

genomics more details view paper
  • Downloaded 4,658 times
  • Download rankings, all-time:
    • Site-wide: 2,046
    • In genomics: 221
  • Year to date:
    • Site-wide: 1,149
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    • Site-wide: 1,149

The Ensembl Variant Effect Predictor

bioinformatics more details view paper
  • Downloaded 2,673 times
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    • Site-wide: 4,528
    • In bioinformatics: 500
  • Year to date:
    • Site-wide: 23,446
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    • Site-wide: 23,446

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

genomics more details view paper
  • Downloaded 2,307 times
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    • Site-wide: 5,641
    • In genomics: 658
  • Year to date:
    • Site-wide: 24,940
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Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression

genomics more details view paper
  • Downloaded 2,161 times
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    • Site-wide: 6,168
    • In genomics: 709
  • Year to date:
    • Site-wide: 84,212
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    • Site-wide: 84,212

Cell-type, single-cell, and spatial signatures of brain-region specific splicing in postnatal development

neuroscience more details view paper
  • Downloaded 1,935 times
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    • Site-wide: 7,255
    • In neuroscience: 751
  • Year to date:
    • Site-wide: 7,112
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    • Site-wide: 7,112

Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution

genomics more details view paper
  • Downloaded 1,852 times
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    • Site-wide: 7,756
    • In genomics: 868
  • Year to date:
    • Site-wide: 91,104
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    • Site-wide: 91,104

Chromosome assembly of large and complex genomes using multiple references

bioinformatics more details view paper
  • Downloaded 1,809 times
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    • Site-wide: 8,021
    • In bioinformatics: 989
  • Year to date:
    • Site-wide: 57,984
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    • Site-wide: 57,984

The tuatara genome: insights into vertebrate evolution from the sole survivor of an ancient reptilian order

genomics more details view paper
  • Downloaded 1,764 times
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    • Site-wide: 8,363
    • In genomics: 943
  • Year to date:
    • Site-wide: 24,198
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    • Site-wide: 24,198

Nearly all new protein-coding predictions in the CHESS database are not protein-coding

genomics more details view paper
  • Downloaded 1,713 times
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    • Site-wide: 8,744
    • In genomics: 983
  • Year to date:
    • Site-wide: 17,927
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    • Site-wide: 17,927

Pervasive lesion segregation shapes cancer genome evolution

cancer biology more details view paper
  • Downloaded 1,700 times
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    • Site-wide: 8,860
    • In cancer biology: 159
  • Year to date:
    • Site-wide: 52,753
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    • Site-wide: 52,753

An improved pig reference genome sequence to enable pig genetics and genomics research

genomics more details view paper
  • Downloaded 1,594 times
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    • Site-wide: 9,740
    • In genomics: 1,081
  • Year to date:
    • Site-wide: 26,637
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    • Site-wide: 26,637

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,517 times
  • Download rankings, all-time:
    • Site-wide: 10,481
    • In genomics: 1,167
  • Year to date:
    • Site-wide: 33,557
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    • Site-wide: 33,557

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
  • Downloaded 1,461 times
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    • Site-wide: 11,045
    • In genomics: 1,234
  • Year to date:
    • Site-wide: 58,273
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    • Site-wide: 58,273

Comparative analysis of neutrophil and monocyte epigenomes

genomics more details view paper
  • Downloaded 1,459 times
  • Download rankings, all-time:
    • Site-wide: 11,063
    • In genomics: 1,236
  • Year to date:
    • Site-wide: 23,306
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    • Site-wide: 23,306

Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains

genomics more details view paper
  • Downloaded 1,345 times
  • Download rankings, all-time:
    • Site-wide: 12,520
    • In genomics: 1,377
  • Year to date:
    • Site-wide: 91,022
  • Since beginning of last month:
    • Site-wide: 91,022

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

genomics more details view paper
  • Downloaded 1,169 times
  • Download rankings, all-time:
    • Site-wide: 15,475
    • In genomics: 1,638
  • Year to date:
    • Site-wide: 58,490
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    • Site-wide: 58,490

Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate

genetics more details view paper
  • Downloaded 1,132 times
  • Download rankings, all-time:
    • Site-wide: 16,258
    • In genetics: 823
  • Year to date:
    • Site-wide: 108,031
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    • Site-wide: 108,031

The evolutionary fates of a large segmental duplication in mouse

genetics more details view paper
  • Downloaded 1,014 times
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    • Site-wide: 19,209
    • In genetics: 958
  • Year to date:
    • Site-wide: 62,359
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    • Site-wide: 62,359

Pseudogenes in the mouse lineage: transcriptional activity and strain-specific history

genomics more details view paper
  • Downloaded 999 times
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    • Site-wide: 19,609
    • In genomics: 2,003
  • Year to date:
    • Site-wide: 47,561
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    • Site-wide: 47,561

Variation in PU.1 binding and chromatin looping at neutrophil enhancers influences autoimmune disease susceptibility

genetics more details view paper
  • Downloaded 767 times
  • Download rankings, all-time:
    • Site-wide: 28,446
    • In genetics: 1,423
  • Year to date:
    • Site-wide: 53,969
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    • Site-wide: 53,969

LINE elements are a reservoir of regulatory potential in mammalian genomes

genomics more details view paper
  • Downloaded 751 times
  • Download rankings, all-time:
    • Site-wide: 29,309
    • In genomics: 2,687
  • Year to date:
    • Site-wide: 26,884
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    • Site-wide: 26,884

A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

genetics more details view paper
  • Downloaded 725 times
  • Download rankings, all-time:
    • Site-wide: 30,802
    • In genetics: 1,531
  • Year to date:
    • Site-wide: 68,450
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    • Site-wide: 68,450

Systematic re-annotation of 191 genes associated with early-onset epilepsy unmasks de novo variants linked to Dravet syndrome in novel SCN1A exons

genomics more details view paper
  • Downloaded 583 times
  • Download rankings, all-time:
    • Site-wide: 41,004
    • In genomics: 3,409
  • Year to date:
    • Site-wide: 57,848
  • Since beginning of last month:
    • Site-wide: 57,848

Ensembl Core Software Resources: storage and programmatic access for DNA sequence and genome annotation

bioinformatics more details view paper
  • Downloaded 535 times
  • Download rankings, all-time:
    • Site-wide: 45,638
    • In bioinformatics: 4,817
  • Year to date:
    • Site-wide: 105,802
  • Since beginning of last month:
    • Site-wide: 105,802

Epigenomic and functional dynamics of human bone marrow myeloid differentiation to mature blood neutrophils

immunology more details view paper
  • Downloaded 509 times
  • Download rankings, all-time:
    • Site-wide: 48,261
    • In immunology: 1,314
  • Year to date:
    • Site-wide: 94,977
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    • Site-wide: 94,977

Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma

cancer biology more details view paper
  • Downloaded 504 times
  • Download rankings, all-time:
    • Site-wide: 48,882
    • In cancer biology: 1,350
  • Year to date:
    • Site-wide: 53,173
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    • Site-wide: 53,173

A chromosome-level assembly of the Atlantic herring – detection of a supergene and other signals of selection

genomics more details view paper
  • Downloaded 459 times
  • Download rankings, all-time:
    • Site-wide: 54,372
    • In genomics: 4,174
  • Year to date:
    • Site-wide: 66,280
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    • Site-wide: 66,280

Functional signatures of evolutionarily young CTCF binding sites

genomics more details view paper
  • Downloaded 454 times
  • Download rankings, all-time:
    • Site-wide: 54,967
    • In genomics: 4,201
  • Year to date:
    • Site-wide: 103,009
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    • Site-wide: 103,009

Cell type specific novel lincRNAs and circRNAs in the BLUEPRINT haematopoietic transcriptomes atlas.

genomics more details view paper
  • Downloaded 426 times
  • Download rankings, all-time:
    • Site-wide: 58,827
    • In genomics: 4,392
  • Year to date:
    • Site-wide: 72,411
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    • Site-wide: 72,411

Adaptation of proteins to the cold in Antarctic fish: A role for Methionine?

evolutionary biology more details view paper
  • Downloaded 397 times
  • Download rankings, all-time:
    • Site-wide: 63,187
    • In evolutionary biology: 3,537
  • Year to date:
    • Site-wide: 59,266
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    • Site-wide: 59,266

Soft Windowing Application to Improve Analysis of High-throughput Phenotyping Data

bioinformatics more details view paper
  • Downloaded 301 times
  • Download rankings, all-time:
    • Site-wide: 79,968
    • In bioinformatics: 7,293
  • Year to date:
    • Site-wide: 84,012
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    • Site-wide: 84,012

Genome variation and conserved regulation identify genomic regions responsible for strain specific phenotypes in rat

genomics more details view paper
  • Downloaded 299 times
  • Download rankings, all-time:
    • Site-wide: 80,312
    • In genomics: 5,277
  • Year to date:
    • Site-wide: 107,416
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    • Site-wide: 107,416

The Ensembl COVID-19 resource: Ongoing integration of public SARS-CoV-2 data

bioinformatics more details view paper
  • Downloaded 170 times
  • Download rankings, all-time:
    • Site-wide: 107,538
    • In bioinformatics: 9,028
  • Year to date:
    • Site-wide: 19,508
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    • Site-wide: 19,508

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