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Author: Paul Flicek

Rankings

  • All-time downloads: 56,207 (rank: 2,839 (tie) )
  • Categories:
    • bioinformatics: 5,988 (rank: 2,116 (tie) )
    • cancer biology: 2,299 (rank: 2,708 (tie) )
    • evolutionary biology: 652 (rank: 11,572 (tie) )
    • genetics: 3,819 (rank: 4,789 )
    • genomics: 40,717 (rank: 237 )
    • immunology: 536 (rank: 19,326 (tie) )
    • neuroscience: 2,196 (rank: 11,009 (tie) )

Downloads per author, site-wide

Preprints

Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
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    • Site-wide: 1,165
    • In genomics: 98
  • Year to date:
    • Site-wide: 57,158
  • Since beginning of last month:
    • Site-wide: 36,821

Towards complete and error-free genome assemblies of all vertebrate species

genomics more details view paper
  • Downloaded 5,770 times
  • Download rankings, all-time:
    • Site-wide: 1,904
    • In genomics: 164
  • Year to date:
    • Site-wide: 1,520
  • Since beginning of last month:
    • Site-wide: 6,038

The Ensembl Variant Effect Predictor

bioinformatics more details view paper
  • Downloaded 2,891 times
  • Download rankings, all-time:
    • Site-wide: 5,032
    • In bioinformatics: 502
  • Year to date:
    • Site-wide: 19,716
  • Since beginning of last month:
    • Site-wide: 58,530

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

genomics more details view paper
  • Downloaded 2,402 times
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    • Site-wide: 6,613
    • In genomics: 711
  • Year to date:
    • Site-wide: 43,064
  • Since beginning of last month:
    • Site-wide: 51,076

High coverage whole genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios

genomics more details view paper
  • Downloaded 2,213 times
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    • Site-wide: 7,452
    • In genomics: 782
  • Year to date:
    • Site-wide: 1,005
  • Since beginning of last month:
    • Site-wide: 961

Cell-type, single-cell, and spatial signatures of brain-region specific splicing in postnatal development

neuroscience more details view paper
  • Downloaded 2,196 times
  • Download rankings, all-time:
    • Site-wide: 7,525
    • In neuroscience: 722
  • Year to date:
    • Site-wide: 11,388
  • Since beginning of last month:
    • Site-wide: 19,464

Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression

genomics more details view paper
  • Downloaded 2,191 times
  • Download rankings, all-time:
    • Site-wide: 7,542
    • In genomics: 793
  • Year to date:
    • Site-wide: 113,578
  • Since beginning of last month:
    • Site-wide: 97,872

The tuatara genome: insights into vertebrate evolution from the sole survivor of an ancient reptilian order

genomics more details view paper
  • Downloaded 1,938 times
  • Download rankings, all-time:
    • Site-wide: 9,047
    • In genomics: 935
  • Year to date:
    • Site-wide: 25,178
  • Since beginning of last month:
    • Site-wide: 18,625

Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution

genomics more details view paper
  • Downloaded 1,871 times
  • Download rankings, all-time:
    • Site-wide: 9,550
    • In genomics: 986
  • Year to date:
    • Site-wide: 130,910
  • Since beginning of last month:
    • Site-wide: 129,408

Chromosome assembly of large and complex genomes using multiple references

bioinformatics more details view paper
  • Downloaded 1,852 times
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    • Site-wide: 9,682
    • In bioinformatics: 1,134
  • Year to date:
    • Site-wide: 88,367
  • Since beginning of last month:
    • Site-wide: 130,291

Nearly all new protein-coding predictions in the CHESS database are not protein-coding

genomics more details view paper
  • Downloaded 1,793 times
  • Download rankings, all-time:
    • Site-wide: 10,174
    • In genomics: 1,055
  • Year to date:
    • Site-wide: 42,171
  • Since beginning of last month:
    • Site-wide: 45,415

Pervasive lesion segregation shapes cancer genome evolution

cancer biology more details view paper
  • Downloaded 1,760 times
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    • Site-wide: 10,458
    • In cancer biology: 193
  • Year to date:
    • Site-wide: 71,599
  • Since beginning of last month:
    • Site-wide: 53,719

An improved pig reference genome sequence to enable pig genetics and genomics research

genomics more details view paper
  • Downloaded 1,720 times
  • Download rankings, all-time:
    • Site-wide: 10,800
    • In genomics: 1,122
  • Year to date:
    • Site-wide: 35,058
  • Since beginning of last month:
    • Site-wide: 30,471

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,625 times
  • Download rankings, all-time:
    • Site-wide: 11,755
    • In genomics: 1,216
  • Year to date:
    • Site-wide: 42,160
  • Since beginning of last month:
    • Site-wide: 97,899

Comparative analysis of neutrophil and monocyte epigenomes

genomics more details view paper
  • Downloaded 1,613 times
  • Download rankings, all-time:
    • Site-wide: 11,879
    • In genomics: 1,231
  • Year to date:
    • Site-wide: 28,081
  • Since beginning of last month:
    • Site-wide: 30,557

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
  • Downloaded 1,533 times
  • Download rankings, all-time:
    • Site-wide: 12,739
    • In genomics: 1,320
  • Year to date:
    • Site-wide: 65,772
  • Since beginning of last month:
    • Site-wide: 30,583

Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains

genomics more details view paper
  • Downloaded 1,368 times
  • Download rankings, all-time:
    • Site-wide: 15,179
    • In genomics: 1,529
  • Year to date:
    • Site-wide: 124,414
  • Since beginning of last month:
    • Site-wide: 140,441

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

genomics more details view paper
  • Downloaded 1,200 times
  • Download rankings, all-time:
    • Site-wide: 18,444
    • In genomics: 1,811
  • Year to date:
    • Site-wide: 102,356
  • Since beginning of last month:
    • Site-wide: 140,658

Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate

genetics more details view paper
  • Downloaded 1,154 times
  • Download rankings, all-time:
    • Site-wide: 19,584
    • In genetics: 909
  • Year to date:
    • Site-wide: 132,442
  • Since beginning of last month:
    • Site-wide: 139,333

Pseudogenes in the mouse lineage: transcriptional activity and strain-specific history

genomics more details view paper
  • Downloaded 1,092 times
  • Download rankings, all-time:
    • Site-wide: 21,217
    • In genomics: 2,042
  • Year to date:
    • Site-wide: 52,261
  • Since beginning of last month:
    • Site-wide: 44,622

The evolutionary fates of a large segmental duplication in mouse

genetics more details view paper
  • Downloaded 1,053 times
  • Download rankings, all-time:
    • Site-wide: 22,379
    • In genetics: 1,035
  • Year to date:
    • Site-wide: 94,807
  • Since beginning of last month:
    • Site-wide: 36,499

Variation in PU.1 binding and chromatin looping at neutrophil enhancers influences autoimmune disease susceptibility

genetics more details view paper
  • Downloaded 864 times
  • Download rankings, all-time:
    • Site-wide: 29,723
    • In genetics: 1,374
  • Year to date:
    • Site-wide: 51,621
  • Since beginning of last month:
    • Site-wide: 93,999

LINE elements are a reservoir of regulatory potential in mammalian genomes

genomics more details view paper
  • Downloaded 840 times
  • Download rankings, all-time:
    • Site-wide: 30,935
    • In genomics: 2,736
  • Year to date:
    • Site-wide: 46,068
  • Since beginning of last month:
    • Site-wide: 103,404

A community-driven roadmap to advance research on translated open reading frames detected by Ribo-seq

genomics more details view paper
  • Downloaded 748 times
  • Download rankings, all-time:
    • Site-wide: 36,366
    • In genomics: 3,060
  • Year to date:
    • Site-wide: 4,469
  • Since beginning of last month:
    • Site-wide: 1,857

A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

genetics more details view paper
  • Downloaded 748 times
  • Download rankings, all-time:
    • Site-wide: 36,407
    • In genetics: 1,670
  • Year to date:
    • Site-wide: 118,051
  • Since beginning of last month:
    • Site-wide: 111,703

Systematic re-annotation of 191 genes associated with early-onset epilepsy unmasks de novo variants linked to Dravet syndrome in novel SCN1A exons

genomics more details view paper
  • Downloaded 618 times
  • Download rankings, all-time:
    • Site-wide: 46,710
    • In genomics: 3,691
  • Year to date:
    • Site-wide: 96,617
  • Since beginning of last month:
    • Site-wide: 123,566

Ensembl Core Software Resources: storage and programmatic access for DNA sequence and genome annotation

bioinformatics more details view paper
  • Downloaded 585 times
  • Download rankings, all-time:
    • Site-wide: 50,025
    • In bioinformatics: 5,125
  • Year to date:
    • Site-wide: 93,571
  • Since beginning of last month:
    • Site-wide: 14,328

Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma

cancer biology more details view paper
  • Downloaded 539 times
  • Download rankings, all-time:
    • Site-wide: 55,353
    • In cancer biology: 1,557
  • Year to date:
    • Site-wide: 94,864
  • Since beginning of last month:
    • Site-wide: 101,496

Epigenomic and functional dynamics of human bone marrow myeloid differentiation to mature blood neutrophils

immunology more details view paper
  • Downloaded 536 times
  • Download rankings, all-time:
    • Site-wide: 55,715
    • In immunology: 1,673
  • Year to date:
    • Site-wide: 120,898
  • Since beginning of last month:
    • Site-wide: 64,886

Functional signatures of evolutionarily young CTCF binding sites

genomics more details view paper
  • Downloaded 504 times
  • Download rankings, all-time:
    • Site-wide: 59,972
    • In genomics: 4,388
  • Year to date:
    • Site-wide: 92,912
  • Since beginning of last month:
    • Site-wide: 60,079

A chromosome-level assembly of the Atlantic herring – detection of a supergene and other signals of selection

genomics more details view paper
  • Downloaded 493 times
  • Download rankings, all-time:
    • Site-wide: 61,461
    • In genomics: 4,457
  • Year to date:
    • Site-wide: 101,555
  • Since beginning of last month:
    • Site-wide: 124,448

Cell type specific novel lincRNAs and circRNAs in the BLUEPRINT haematopoietic transcriptomes atlas.

genomics more details view paper
  • Downloaded 456 times
  • Download rankings, all-time:
    • Site-wide: 66,813
    • In genomics: 4,724
  • Year to date:
    • Site-wide: 108,919
  • Since beginning of last month:
    • Site-wide: 69,482

Adaptation of proteins to the cold in Antarctic fish: A role for Methionine?

evolutionary biology more details view paper
  • Downloaded 413 times
  • Download rankings, all-time:
    • Site-wide: 73,838
    • In evolutionary biology: 3,866
  • Year to date:
    • Site-wide: 122,942
  • Since beginning of last month:
    • Site-wide: 124,277

The Ensembl COVID-19 resource: Ongoing integration of public SARS-CoV-2 data

bioinformatics more details view paper
  • Downloaded 337 times
  • Download rankings, all-time:
    • Site-wide: 88,351
    • In bioinformatics: 7,903
  • Year to date:
    • Site-wide: 24,635
  • Since beginning of last month:
    • Site-wide: 81,870

Soft Windowing Application to Improve Analysis of High-throughput Phenotyping Data

bioinformatics more details view paper
  • Downloaded 323 times
  • Download rankings, all-time:
    • Site-wide: 91,536
    • In bioinformatics: 8,061
  • Year to date:
    • Site-wide: 125,045
  • Since beginning of last month:
    • Site-wide: 110,736

Genome variation and conserved regulation identify genomic regions responsible for strain specific phenotypes in rat

genomics more details view paper
  • Downloaded 315 times
  • Download rankings, all-time:
    • Site-wide: 93,156
    • In genomics: 5,803
  • Year to date:
    • Site-wide: 140,892
  • Since beginning of last month:
    • Site-wide: 110,680

A minimally morphologically destructive approach for DNA retrieval and whole genome shotgun sequencing of pinned historic Dipteran vector species

evolutionary biology more details view paper
  • Downloaded 239 times
  • Download rankings, all-time:
    • Site-wide: 111,164
    • In evolutionary biology: 5,663
  • Year to date:
    • Site-wide: 22,827
  • Since beginning of last month:
    • Site-wide: 3,683

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