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Author: Paul Flicek

Rankings

  • All-time downloads: 60,909 (rank: 3,116 )
  • Categories:
    • bioinformatics: 6,273 (rank: 2,216 (tie) )
    • cancer biology: 2,418 (rank: 3,088 (tie) )
    • evolutionary biology: 839 (rank: 10,291 (tie) )
    • genetics: 4,008 (rank: 4,863 )
    • genomics: 44,435 (rank: 261 )
    • immunology: 592 (rank: 21,283 (tie) )
    • neuroscience: 2,344 (rank: 12,020 (tie) )

Downloads per author, site-wide

Preprints

Multiple adaptive solutions to face climatic constraints: novel insights in the debate over the role of convergence in local adaptation

evolutionary biology more details view paper

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Multi-platform discovery of haplotype-resolved structural variation in human genomes

genomics more details view paper
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    • Site-wide: 1,338
    • In genomics: 102
  • Year to date:
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    • Site-wide: 107,092

Towards complete and error-free genome assemblies of all vertebrate species

genomics more details view paper
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    • Site-wide: 2,091
    • In genomics: 169
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    • Site-wide: 2,229
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High coverage whole genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios

genomics more details view paper
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    • Site-wide: 3,683
    • In genomics: 367
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The Ensembl Variant Effect Predictor

bioinformatics more details view paper
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    • In bioinformatics: 539
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Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

genomics more details view paper
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    • Site-wide: 7,154
    • In genomics: 732
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Cell-type, single-cell, and spatial signatures of brain-region specific splicing in postnatal development

neuroscience more details view paper
  • Downloaded 2,344 times
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    • Site-wide: 7,895
    • In neuroscience: 739
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Complexity and conservation of regulatory landscapes underlie evolutionary resilience of mammalian gene expression

genomics more details view paper
  • Downloaded 2,258 times
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    • Site-wide: 8,344
    • In genomics: 835
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    • Site-wide: 107,029
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The tuatara genome: insights into vertebrate evolution from the sole survivor of an ancient reptilian order

genomics more details view paper
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    • Site-wide: 9,666
    • In genomics: 956
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Chromosome assembly of large and complex genomes using multiple references

bioinformatics more details view paper
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    • Site-wide: 10,610
    • In bioinformatics: 1,198
  • Year to date:
    • Site-wide: 91,751
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Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution

genomics more details view paper
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    • Site-wide: 10,663
    • In genomics: 1,050
  • Year to date:
    • Site-wide: 139,306
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Nearly all new protein-coding predictions in the CHESS database are not protein-coding

genomics more details view paper
  • Downloaded 1,894 times
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    • Site-wide: 10,836
    • In genomics: 1,063
  • Year to date:
    • Site-wide: 45,242
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Pervasive lesion segregation shapes cancer genome evolution

cancer biology more details view paper
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    • Site-wide: 11,236
    • In cancer biology: 213
  • Year to date:
    • Site-wide: 69,593
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An improved pig reference genome sequence to enable pig genetics and genomics research

genomics more details view paper
  • Downloaded 1,817 times
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    • Site-wide: 11,520
    • In genomics: 1,138
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Comparative analysis of neutrophil and monocyte epigenomes

genomics more details view paper
  • Downloaded 1,703 times
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    • Site-wide: 12,684
    • In genomics: 1,268
  • Year to date:
    • Site-wide: 35,267
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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,686 times
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    • Site-wide: 12,883
    • In genomics: 1,283
  • Year to date:
    • Site-wide: 56,829
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    • Site-wide: 124,923

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
  • Downloaded 1,631 times
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    • Site-wide: 13,506
    • In genomics: 1,337
  • Year to date:
    • Site-wide: 62,194
  • Since beginning of last month:
    • Site-wide: 50,015

Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains

genomics more details view paper
  • Downloaded 1,408 times
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    • Site-wide: 17,045
    • In genomics: 1,635
  • Year to date:
    • Site-wide: 137,631
  • Since beginning of last month:
    • Site-wide: 139,696

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

genomics more details view paper
  • Downloaded 1,242 times
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    • Site-wide: 20,563
    • In genomics: 1,922
  • Year to date:
    • Site-wide: 121,725
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Pseudogenes in the mouse lineage: transcriptional activity and strain-specific history

genomics more details view paper
  • Downloaded 1,199 times
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    • Site-wide: 21,685
    • In genomics: 2,023
  • Year to date:
    • Site-wide: 50,697
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Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate

genetics more details view paper
  • Downloaded 1,188 times
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    • Site-wide: 21,988
    • In genetics: 961
  • Year to date:
    • Site-wide: 146,713
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A community-driven roadmap to advance research on translated open reading frames detected by Ribo-seq

genomics more details view paper
  • Downloaded 1,182 times
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    • Site-wide: 22,187
    • In genomics: 2,058
  • Year to date:
    • Site-wide: 4,186
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    • Site-wide: 6,353

The evolutionary fates of a large segmental duplication in mouse

genetics more details view paper
  • Downloaded 1,099 times
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    • Site-wide: 24,791
    • In genetics: 1,081
  • Year to date:
    • Site-wide: 111,788
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    • Site-wide: 135,340

Variation in PU.1 binding and chromatin looping at neutrophil enhancers influences autoimmune disease susceptibility

genetics more details view paper
  • Downloaded 948 times
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    • Site-wide: 30,845
    • In genetics: 1,355
  • Year to date:
    • Site-wide: 57,391
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    • Site-wide: 64,487

LINE elements are a reservoir of regulatory potential in mammalian genomes

genomics more details view paper
  • Downloaded 912 times
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    • Site-wide: 32,705
    • In genomics: 2,758
  • Year to date:
    • Site-wide: 56,735
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A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog

genetics more details view paper
  • Downloaded 773 times
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    • Site-wide: 41,482
    • In genetics: 1,792
  • Year to date:
    • Site-wide: 145,621
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    • Site-wide: 140,965

Systematic re-annotation of 191 genes associated with early-onset epilepsy unmasks de novo variants linked to Dravet syndrome in novel SCN1A exons

genomics more details view paper
  • Downloaded 679 times
  • Download rankings, all-time:
    • Site-wide: 49,820
    • In genomics: 3,785
  • Year to date:
    • Site-wide: 101,979
  • Since beginning of last month:
    • Site-wide: 91,229

Ensembl Core Software Resources: storage and programmatic access for DNA sequence and genome annotation

bioinformatics more details view paper
  • Downloaded 615 times
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    • Site-wide: 56,843
    • In bioinformatics: 5,642
  • Year to date:
    • Site-wide: 124,822
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    • Site-wide: 132,272

Epigenomic and functional dynamics of human bone marrow myeloid differentiation to mature blood neutrophils

immunology more details view paper
  • Downloaded 592 times
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    • Site-wide: 59,786
    • In immunology: 1,837
  • Year to date:
    • Site-wide: 120,413
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    • Site-wide: 74,481

Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma

cancer biology more details view paper
  • Downloaded 569 times
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    • Site-wide: 62,692
    • In cancer biology: 1,809
  • Year to date:
    • Site-wide: 126,749
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    • Site-wide: 137,534

Functional signatures of evolutionarily young CTCF binding sites

genomics more details view paper
  • Downloaded 538 times
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    • Site-wide: 67,090
    • In genomics: 4,686
  • Year to date:
    • Site-wide: 121,169
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    • Site-wide: 134,493

Cell type specific novel lincRNAs and circRNAs in the BLUEPRINT haematopoietic transcriptomes atlas.

genomics more details view paper
  • Downloaded 533 times
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    • Site-wide: 67,994
    • In genomics: 4,712
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    • Site-wide: 97,447
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A chromosome-level assembly of the Atlantic herring – detection of a supergene and other signals of selection

genomics more details view paper
  • Downloaded 514 times
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    • Site-wide: 70,857
    • In genomics: 4,869
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    • Site-wide: 139,504
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Adaptation of proteins to the cold in Antarctic fish: A role for Methionine?

evolutionary biology more details view paper
  • Downloaded 458 times
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    • Site-wide: 80,543
    • In evolutionary biology: 4,038
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The Ensembl COVID-19 resource: Ongoing integration of public SARS-CoV-2 data

bioinformatics more details view paper
  • Downloaded 437 times
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    • Site-wide: 84,551
    • In bioinformatics: 7,600
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A minimally morphologically destructive approach for DNA retrieval and whole genome shotgun sequencing of pinned historic Dipteran vector species

evolutionary biology more details view paper
  • Downloaded 381 times
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    • Site-wide: 96,655
    • In evolutionary biology: 4,843
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Soft Windowing Application to Improve Analysis of High-throughput Phenotyping Data

bioinformatics more details view paper
  • Downloaded 342 times
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    • Site-wide: 105,707
    • In bioinformatics: 8,928
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Genome variation and conserved regulation identify genomic regions responsible for strain specific phenotypes in rat

genomics more details view paper
  • Downloaded 340 times
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    • Site-wide: 106,378
    • In genomics: 6,281
  • Year to date:
    • Site-wide: 156,171
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