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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,506 bioRxiv papers from 243,425 authors.

Author: Gil McVean

Rankings

  • All-time downloads: 53,422 (rank: 199 out of 243,425)
  • Categories:
    • bioinformatics: 19,206 (rank: 75 out of 21,556)
    • epidemiology: 519 (rank: 1,670 (tie) out of 9,128)
    • evolutionary biology: 3,947 (rank: 270 out of 13,529)
    • genetics: 18,219 (rank: 267 out of 23,659)
    • genomics: 11,531 (rank: 674 out of 28,107)

Downloads per author, site-wide

Preprints

Coupling Wright-Fisher and coalescent dynamics for realistic simulation of population-scale datasets

evolutionary biology more details view paper

No bioRxiv download data for this paper yet.

Genome-wide genetic data on ~500,000 UK Biobank participants

genetics more details view paper
  • Downloaded 12,482 times
  • Download rankings, all-time:
    • Site-wide: 60 out of 52,506
    • In genetics: 9 out of 3,067
  • Year to date:
    • Site-wide: 167 out of 52,506
  • Since beginning of last month:
    • Site-wide: 192 out of 52,506

Genome Graphs

bioinformatics more details view paper
  • Downloaded 7,175 times
  • Download rankings, all-time:
    • Site-wide: 167 out of 52,506
    • In bioinformatics: 30 out of 5,498
  • Year to date:
    • Site-wide: 847 out of 52,506
  • Since beginning of last month:
    • Site-wide: 1,022 out of 52,506

Real-time search of all bacterial and viral genomic data

bioinformatics more details view paper
  • Downloaded 5,253 times
  • Download rankings, all-time:
    • Site-wide: 306 out of 52,506
    • In bioinformatics: 62 out of 5,498
  • Year to date:
    • Site-wide: 1,144 out of 52,506
  • Since beginning of last month:
    • Site-wide: 5,756 out of 52,506

Genome variation and meiotic recombination in Plasmodium falciparum: insights from deep sequencing of genetic crosses

genomics more details view paper
  • Downloaded 3,401 times
  • Download rankings, all-time:
    • Site-wide: 700 out of 52,506
    • In genomics: 187 out of 3,756
  • Year to date:
    • Site-wide: 38,209 out of 52,506
  • Since beginning of last month:
    • Site-wide: 36,016 out of 52,506

Improved genome inference in the MHC using a population reference graph

genomics more details view paper
  • Downloaded 3,189 times
  • Download rankings, all-time:
    • Site-wide: 802 out of 52,506
    • In genomics: 212 out of 3,756
  • Year to date:
    • Site-wide: 39,702 out of 52,506
  • Since beginning of last month:
    • Site-wide: 35,144 out of 52,506

Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis.

genomics more details view paper
  • Downloaded 3,077 times
  • Download rankings, all-time:
    • Site-wide: 849 out of 52,506
    • In genomics: 223 out of 3,756
  • Year to date:
    • Site-wide: 42,244 out of 52,506
  • Since beginning of last month:
    • Site-wide: 34,945 out of 52,506

A reference dataset of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

bioinformatics more details view paper
  • Downloaded 2,561 times
  • Download rankings, all-time:
    • Site-wide: 1,182 out of 52,506
    • In bioinformatics: 246 out of 5,498
  • Year to date:
    • Site-wide: 33,795 out of 52,506
  • Since beginning of last month:
    • Site-wide: 40,728 out of 52,506

Inferring the ancestry of everyone

evolutionary biology more details view paper
  • Downloaded 2,021 times
  • Download rankings, all-time:
    • Site-wide: 1,813 out of 52,506
    • In evolutionary biology: 85 out of 3,671
  • Year to date:
    • Site-wide: 747 out of 52,506
  • Since beginning of last month:
    • Site-wide: 2,772 out of 52,506

A natural encoding of genetic variation in a Burrows-Wheeler Transform to enable mapping and genome inference

bioinformatics more details view paper
  • Downloaded 1,982 times
  • Download rankings, all-time:
    • Site-wide: 1,874 out of 52,506
    • In bioinformatics: 396 out of 5,498
  • Year to date:
    • Site-wide: 22,858 out of 52,506
  • Since beginning of last month:
    • Site-wide: 27,793 out of 52,506

Dating genomic variants and shared ancestry in population-scale sequencing data

genomics more details view paper
  • Downloaded 1,864 times
  • Download rankings, all-time:
    • Site-wide: 2,078 out of 52,506
    • In genomics: 457 out of 3,756
  • Year to date:
    • Site-wide: 2,419 out of 52,506
  • Since beginning of last month:
    • Site-wide: 10,573 out of 52,506

Practical Use of Methods for Imputation of HLA Alleles from SNP Genotype Data

genetics more details view paper
  • Downloaded 1,738 times
  • Download rankings, all-time:
    • Site-wide: 2,330 out of 52,506
    • In genetics: 223 out of 3,067
  • Year to date:
    • Site-wide: 7,331 out of 52,506
  • Since beginning of last month:
    • Site-wide: 8,157 out of 52,506

Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank

genetics more details view paper
  • Downloaded 1,450 times
  • Download rankings, all-time:
    • Site-wide: 3,142 out of 52,506
    • In genetics: 290 out of 3,067
  • Year to date:
    • Site-wide: 29,336 out of 52,506
  • Since beginning of last month:
    • Site-wide: 27,708 out of 52,506

Integrating long-range connectivity information into de Bruijn graphs

bioinformatics more details view paper
  • Downloaded 1,070 times
  • Download rankings, all-time:
    • Site-wide: 5,140 out of 52,506
    • In bioinformatics: 1,006 out of 5,498
  • Year to date:
    • Site-wide: 24,562 out of 52,506
  • Since beginning of last month:
    • Site-wide: 28,337 out of 52,506

Systematic classification of shared components of genetic risk for common human diseases

genetics more details view paper
  • Downloaded 1,050 times
  • Download rankings, all-time:
    • Site-wide: 5,294 out of 52,506
    • In genetics: 448 out of 3,067
  • Year to date:
    • Site-wide: 8,382 out of 52,506
  • Since beginning of last month:
    • Site-wide: 9,945 out of 52,506

Efficient coalescent simulation and genealogical analysis for large sample sizes

evolutionary biology more details view paper
  • Downloaded 985 times
  • Download rankings, all-time:
    • Site-wide: 5,879 out of 52,506
    • In evolutionary biology: 379 out of 3,671
  • Year to date:
    • Site-wide: 43,042 out of 52,506
  • Since beginning of last month:
    • Site-wide: 45,273 out of 52,506

Stable recombination hotspots in birds

evolutionary biology more details view paper
  • Downloaded 941 times
  • Download rankings, all-time:
    • Site-wide: 6,341 out of 52,506
    • In evolutionary biology: 427 out of 3,671
  • Year to date:
    • Site-wide: 46,326 out of 52,506
  • Since beginning of last month:
    • Site-wide: 50,131 out of 52,506

New insights into malaria susceptibility from the genomes of 17,000 individuals from Africa, Asia, and Oceania

genetics more details view paper
  • Downloaded 857 times
  • Download rankings, all-time:
    • Site-wide: 7,319 out of 52,506
    • In genetics: 583 out of 3,067
  • Year to date:
    • Site-wide: 869 out of 52,506
  • Since beginning of last month:
    • Site-wide: 3,032 out of 52,506

Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data

bioinformatics more details view paper
  • Downloaded 669 times
  • Download rankings, all-time:
    • Site-wide: 10,517 out of 52,506
    • In bioinformatics: 1,807 out of 5,498
  • Year to date:
    • Site-wide: 25,155 out of 52,506
  • Since beginning of last month:
    • Site-wide: 20,775 out of 52,506

The origins and relatedness structure of mixed infections vary with local prevalence of P. falciparum malaria

epidemiology more details view paper
  • Downloaded 519 times
  • Download rankings, all-time:
    • Site-wide: 14,747 out of 52,506
    • In epidemiology: 177 out of 1,528
  • Year to date:
    • Site-wide: 8,087 out of 52,506
  • Since beginning of last month:
    • Site-wide: 8,425 out of 52,506

HLA*PRG:LA - HLA typing from linearly projected graph alignments

bioinformatics more details view paper
  • Downloaded 496 times
  • Download rankings, all-time:
    • Site-wide: 15,629 out of 52,506
    • In bioinformatics: 2,449 out of 5,498
  • Year to date:
    • Site-wide: 10,113 out of 52,506
  • Since beginning of last month:
    • Site-wide: 19,618 out of 52,506

Mapping the drivers of within-host pathogen evolution using massive data sets

genetics more details view paper
  • Downloaded 450 times
  • Download rankings, all-time:
    • Site-wide: 17,496 out of 52,506
    • In genetics: 1,227 out of 3,067
  • Year to date:
    • Site-wide: 40,803 out of 52,506
  • Since beginning of last month:
    • Site-wide: 44,813 out of 52,506

Selfish mutations dysregulating RAS-MAPK signaling are pervasive in aged human testes

genetics more details view paper
  • Downloaded 192 times
  • Download rankings, all-time:
    • Site-wide: 36,184 out of 52,506
    • In genetics: 2,269 out of 3,067
  • Year to date:
    • Site-wide: 45,042 out of 52,506
  • Since beginning of last month:
    • Site-wide: 40,065 out of 52,506

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