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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,747 bioRxiv papers from 278,434 authors.

Author: Gil McVean

Rankings

  • All-time downloads: 56,441 (rank: 217 out of 278,434)
  • Categories:
    • bioinformatics: 20,560 (rank: 77 out of 24,395)
    • epidemiology: 586 (rank: 1,725 (tie) out of 9,529)
    • evolutionary biology: 3,914 (rank: 319 out of 15,246)
    • genetics: 19,052 (rank: 311 out of 27,725)
    • genomics: 12,329 (rank: 721 out of 31,945)

Downloads per author, site-wide

Preprints

New insights into malaria susceptibility from the genomes of 17,000 individuals from Africa, Asia, and Oceania

genetics more details view paper

No bioRxiv download data for this paper yet.

Genome-wide genetic data on ~500,000 UK Biobank participants

genetics more details view paper
  • Downloaded 13,772 times
  • Download rankings, all-time:
    • Site-wide: 56 out of 62,747
    • In genetics: 9 out of 3,562
  • Year to date:
    • Site-wide: 146 out of 62,747
  • Since beginning of last month:
    • Site-wide: 220 out of 62,747

Genome Graphs

bioinformatics more details view paper
  • Downloaded 7,608 times
  • Download rankings, all-time:
    • Site-wide: 177 out of 62,747
    • In bioinformatics: 31 out of 6,251
  • Year to date:
    • Site-wide: 919 out of 62,747
  • Since beginning of last month:
    • Site-wide: 2,051 out of 62,747

Real-time search of all bacterial and viral genomic data

bioinformatics more details view paper
  • Downloaded 5,491 times
  • Download rankings, all-time:
    • Site-wide: 343 out of 62,747
    • In bioinformatics: 65 out of 6,251
  • Year to date:
    • Site-wide: 1,535 out of 62,747
  • Since beginning of last month:
    • Site-wide: 5,964 out of 62,747

Genome variation and meiotic recombination in Plasmodium falciparum: insights from deep sequencing of genetic crosses

genomics more details view paper
  • Downloaded 3,450 times
  • Download rankings, all-time:
    • Site-wide: 831 out of 62,747
    • In genomics: 214 out of 4,316
  • Year to date:
    • Site-wide: 41,970 out of 62,747
  • Since beginning of last month:
    • Site-wide: 31,001 out of 62,747

Improved genome inference in the MHC using a population reference graph

genomics more details view paper
  • Downloaded 3,230 times
  • Download rankings, all-time:
    • Site-wide: 934 out of 62,747
    • In genomics: 239 out of 4,316
  • Year to date:
    • Site-wide: 45,535 out of 62,747
  • Since beginning of last month:
    • Site-wide: 54,744 out of 62,747

Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis.

genomics more details view paper
  • Downloaded 3,120 times
  • Download rankings, all-time:
    • Site-wide: 998 out of 62,747
    • In genomics: 246 out of 4,316
  • Year to date:
    • Site-wide: 46,968 out of 62,747
  • Since beginning of last month:
    • Site-wide: 33,842 out of 62,747

A reference dataset of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

bioinformatics more details view paper
  • Downloaded 2,657 times
  • Download rankings, all-time:
    • Site-wide: 1,345 out of 62,747
    • In bioinformatics: 272 out of 6,251
  • Year to date:
    • Site-wide: 27,396 out of 62,747
  • Since beginning of last month:
    • Site-wide: 37,744 out of 62,747

Dating genomic variants and shared ancestry in population-scale sequencing data

genomics more details view paper
  • Downloaded 2,529 times
  • Download rankings, all-time:
    • Site-wide: 1,452 out of 62,747
    • In genomics: 332 out of 4,316
  • Year to date:
    • Site-wide: 1,178 out of 62,747
  • Since beginning of last month:
    • Site-wide: 740 out of 62,747

Inferring the ancestry of everyone

evolutionary biology more details view paper
  • Downloaded 2,432 times
  • Download rankings, all-time:
    • Site-wide: 1,579 out of 62,747
    • In evolutionary biology: 69 out of 4,228
  • Year to date:
    • Site-wide: 874 out of 62,747
  • Since beginning of last month:
    • Site-wide: 2,044 out of 62,747

A natural encoding of genetic variation in a Burrows-Wheeler Transform to enable mapping and genome inference

bioinformatics more details view paper
  • Downloaded 2,051 times
  • Download rankings, all-time:
    • Site-wide: 2,133 out of 62,747
    • In bioinformatics: 439 out of 6,251
  • Year to date:
    • Site-wide: 25,163 out of 62,747
  • Since beginning of last month:
    • Site-wide: 41,858 out of 62,747

Practical Use of Methods for Imputation of HLA Alleles from SNP Genotype Data

genetics more details view paper
  • Downloaded 1,926 times
  • Download rankings, all-time:
    • Site-wide: 2,392 out of 62,747
    • In genetics: 228 out of 3,562
  • Year to date:
    • Site-wide: 6,340 out of 62,747
  • Since beginning of last month:
    • Site-wide: 7,494 out of 62,747

Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank

genetics more details view paper
  • Downloaded 1,501 times
  • Download rankings, all-time:
    • Site-wide: 3,632 out of 62,747
    • In genetics: 319 out of 3,562
  • Year to date:
    • Site-wide: 34,304 out of 62,747
  • Since beginning of last month:
    • Site-wide: 42,115 out of 62,747

Systematic classification of shared components of genetic risk for common human diseases

genetics more details view paper
  • Downloaded 1,154 times
  • Download rankings, all-time:
    • Site-wide: 5,602 out of 62,747
    • In genetics: 452 out of 3,562
  • Year to date:
    • Site-wide: 10,092 out of 62,747
  • Since beginning of last month:
    • Site-wide: 12,366 out of 62,747

Integrating long-range connectivity information into de Bruijn graphs

bioinformatics more details view paper
  • Downloaded 1,145 times
  • Download rankings, all-time:
    • Site-wide: 5,681 out of 62,747
    • In bioinformatics: 1,089 out of 6,251
  • Year to date:
    • Site-wide: 25,318 out of 62,747
  • Since beginning of last month:
    • Site-wide: 36,604 out of 62,747

Stable recombination hotspots in birds

evolutionary biology more details view paper
  • Downloaded 970 times
  • Download rankings, all-time:
    • Site-wide: 7,422 out of 62,747
    • In evolutionary biology: 464 out of 4,228
  • Year to date:
    • Site-wide: 55,314 out of 62,747
  • Since beginning of last month:
    • Site-wide: 58,032 out of 62,747

Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data

bioinformatics more details view paper
  • Downloaded 762 times
  • Download rankings, all-time:
    • Site-wide: 10,798 out of 62,747
    • In bioinformatics: 1,843 out of 6,251
  • Year to date:
    • Site-wide: 22,868 out of 62,747
  • Since beginning of last month:
    • Site-wide: 14,511 out of 62,747

The origins and relatedness structure of mixed infections vary with local prevalence of P. falciparum malaria

epidemiology more details view paper
  • Downloaded 586 times
  • Download rankings, all-time:
    • Site-wide: 15,619 out of 62,747
    • In epidemiology: 176 out of 1,556
  • Year to date:
    • Site-wide: 11,924 out of 62,747
  • Since beginning of last month:
    • Site-wide: 34,566 out of 62,747

HLA*PRG:LA - HLA typing from linearly projected graph alignments

bioinformatics more details view paper
  • Downloaded 571 times
  • Download rankings, all-time:
    • Site-wide: 16,159 out of 62,747
    • In bioinformatics: 2,512 out of 6,251
  • Year to date:
    • Site-wide: 13,410 out of 62,747
  • Since beginning of last month:
    • Site-wide: 24,014 out of 62,747

Coupling Wright-Fisher and coalescent dynamics for realistic simulation of population-scale datasets

evolutionary biology more details view paper
  • Downloaded 512 times
  • Download rankings, all-time:
    • Site-wide: 18,615 out of 62,747
    • In evolutionary biology: 1,386 out of 4,228
  • Year to date:
    • Site-wide: 4,725 out of 62,747
  • Since beginning of last month:
    • Site-wide: 8,253 out of 62,747

Mapping the drivers of within-host pathogen evolution using massive data sets

genetics more details view paper
  • Downloaded 474 times
  • Download rankings, all-time:
    • Site-wide: 20,458 out of 62,747
    • In genetics: 1,380 out of 3,562
  • Year to date:
    • Site-wide: 53,018 out of 62,747
  • Since beginning of last month:
    • Site-wide: 48,901 out of 62,747

Detection of simple and complex de novo mutations without, with, or with multiple reference sequences

bioinformatics more details view paper
  • Downloaded 275 times
  • Download rankings, all-time:
    • Site-wide: 35,373 out of 62,747
    • In bioinformatics: 4,376 out of 6,251
  • Year to date:
    • Site-wide: 12,917 out of 62,747
  • Since beginning of last month:
    • Site-wide: 12,205 out of 62,747

Selfish mutations dysregulating RAS-MAPK signaling are pervasive in aged human testes

genetics more details view paper
  • Downloaded 225 times
  • Download rankings, all-time:
    • Site-wide: 41,029 out of 62,747
    • In genetics: 2,480 out of 3,562
  • Year to date:
    • Site-wide: 53,068 out of 62,747
  • Since beginning of last month:
    • Site-wide: 37,724 out of 62,747

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