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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,915 bioRxiv papers from 266,490 authors.

Author: Gil McVean

Rankings

  • All-time downloads: 56,471 (rank: 204 out of 266,490)
  • Categories:
    • bioinformatics: 20,101 (rank: 77 out of 23,182)
    • epidemiology: 568 (rank: 1,720 (tie) out of 9,580)
    • evolutionary biology: 4,690 (rank: 232 out of 14,430)
    • genetics: 19,133 (rank: 267 out of 25,354)
    • genomics: 11,979 (rank: 685 out of 30,388)

Downloads per author, site-wide

Preprints

Genome-wide genetic data on ~500,000 UK Biobank participants

genetics more details view paper
  • Downloaded 13,060 times
  • Download rankings, all-time:
    • Site-wide: 59 out of 57,915
    • In genetics: 9 out of 3,319
  • Year to date:
    • Site-wide: 181 out of 57,915
  • Since beginning of last month:
    • Site-wide: 376 out of 57,915

Genome Graphs

bioinformatics more details view paper
  • Downloaded 7,415 times
  • Download rankings, all-time:
    • Site-wide: 172 out of 57,915
    • In bioinformatics: 31 out of 5,899
  • Year to date:
    • Site-wide: 920 out of 57,915
  • Since beginning of last month:
    • Site-wide: 1,946 out of 57,915

Real-time search of all bacterial and viral genomic data

bioinformatics more details view paper
  • Downloaded 5,412 times
  • Download rankings, all-time:
    • Site-wide: 327 out of 57,915
    • In bioinformatics: 63 out of 5,899
  • Year to date:
    • Site-wide: 1,339 out of 57,915
  • Since beginning of last month:
    • Site-wide: 3,821 out of 57,915

Genome variation and meiotic recombination in Plasmodium falciparum: insights from deep sequencing of genetic crosses

genomics more details view paper
  • Downloaded 3,432 times
  • Download rankings, all-time:
    • Site-wide: 790 out of 57,915
    • In genomics: 207 out of 4,060
  • Year to date:
    • Site-wide: 40,134 out of 57,915
  • Since beginning of last month:
    • Site-wide: 29,244 out of 57,915

Improved genome inference in the MHC using a population reference graph

genomics more details view paper
  • Downloaded 3,222 times
  • Download rankings, all-time:
    • Site-wide: 878 out of 57,915
    • In genomics: 227 out of 4,060
  • Year to date:
    • Site-wide: 40,316 out of 57,915
  • Since beginning of last month:
    • Site-wide: 28,465 out of 57,915

Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis.

genomics more details view paper
  • Downloaded 3,103 times
  • Download rankings, all-time:
    • Site-wide: 940 out of 57,915
    • In genomics: 236 out of 4,060
  • Year to date:
    • Site-wide: 45,420 out of 57,915
  • Since beginning of last month:
    • Site-wide: 34,965 out of 57,915

A reference dataset of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

bioinformatics more details view paper
  • Downloaded 2,628 times
  • Download rankings, all-time:
    • Site-wide: 1,283 out of 57,915
    • In bioinformatics: 263 out of 5,899
  • Year to date:
    • Site-wide: 26,967 out of 57,915
  • Since beginning of last month:
    • Site-wide: 10,070 out of 57,915

Inferring the ancestry of everyone

evolutionary biology more details view paper
  • Downloaded 2,269 times
  • Download rankings, all-time:
    • Site-wide: 1,658 out of 57,915
    • In evolutionary biology: 74 out of 3,970
  • Year to date:
    • Site-wide: 807 out of 57,915
  • Since beginning of last month:
    • Site-wide: 1,911 out of 57,915

Dating genomic variants and shared ancestry in population-scale sequencing data

genomics more details view paper
  • Downloaded 2,222 times
  • Download rankings, all-time:
    • Site-wide: 1,719 out of 57,915
    • In genomics: 383 out of 4,060
  • Year to date:
    • Site-wide: 1,506 out of 57,915
  • Since beginning of last month:
    • Site-wide: 584 out of 57,915

A natural encoding of genetic variation in a Burrows-Wheeler Transform to enable mapping and genome inference

bioinformatics more details view paper
  • Downloaded 2,036 times
  • Download rankings, all-time:
    • Site-wide: 1,980 out of 57,915
    • In bioinformatics: 411 out of 5,899
  • Year to date:
    • Site-wide: 21,956 out of 57,915
  • Since beginning of last month:
    • Site-wide: 18,258 out of 57,915

Practical Use of Methods for Imputation of HLA Alleles from SNP Genotype Data

genetics more details view paper
  • Downloaded 1,849 times
  • Download rankings, all-time:
    • Site-wide: 2,344 out of 57,915
    • In genetics: 225 out of 3,319
  • Year to date:
    • Site-wide: 6,608 out of 57,915
  • Since beginning of last month:
    • Site-wide: 5,202 out of 57,915

Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank

genetics more details view paper
  • Downloaded 1,488 times
  • Download rankings, all-time:
    • Site-wide: 3,386 out of 57,915
    • In genetics: 305 out of 3,319
  • Year to date:
    • Site-wide: 30,503 out of 57,915
  • Since beginning of last month:
    • Site-wide: 25,092 out of 57,915

Integrating long-range connectivity information into de Bruijn graphs

bioinformatics more details view paper
  • Downloaded 1,123 times
  • Download rankings, all-time:
    • Site-wide: 5,382 out of 57,915
    • In bioinformatics: 1,035 out of 5,899
  • Year to date:
    • Site-wide: 23,333 out of 57,915
  • Since beginning of last month:
    • Site-wide: 14,577 out of 57,915

Systematic classification of shared components of genetic risk for common human diseases

genetics more details view paper
  • Downloaded 1,109 times
  • Download rankings, all-time:
    • Site-wide: 5,512 out of 57,915
    • In genetics: 456 out of 3,319
  • Year to date:
    • Site-wide: 9,602 out of 57,915
  • Since beginning of last month:
    • Site-wide: 20,055 out of 57,915

Efficient coalescent simulation and genealogical analysis for large sample sizes

evolutionary biology more details view paper
  • Downloaded 1,007 times
  • Download rankings, all-time:
    • Site-wide: 6,474 out of 57,915
    • In evolutionary biology: 412 out of 3,970
  • Year to date:
    • Site-wide: 47,669 out of 57,915
  • Since beginning of last month:
    • Site-wide: 49,599 out of 57,915

Stable recombination hotspots in birds

evolutionary biology more details view paper
  • Downloaded 965 times
  • Download rankings, all-time:
    • Site-wide: 6,934 out of 57,915
    • In evolutionary biology: 450 out of 3,970
  • Year to date:
    • Site-wide: 49,663 out of 57,915
  • Since beginning of last month:
    • Site-wide: 40,717 out of 57,915

New insights into malaria susceptibility from the genomes of 17,000 individuals from Africa, Asia, and Oceania

genetics more details view paper
  • Downloaded 956 times
  • Download rankings, all-time:
    • Site-wide: 7,034 out of 57,915
    • In genetics: 561 out of 3,319
  • Year to date:
    • Site-wide: 1,207 out of 57,915
  • Since beginning of last month:
    • Site-wide: 8,642 out of 57,915

Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data

bioinformatics more details view paper
  • Downloaded 718 times
  • Download rankings, all-time:
    • Site-wide: 10,839 out of 57,915
    • In bioinformatics: 1,842 out of 5,899
  • Year to date:
    • Site-wide: 24,607 out of 57,915
  • Since beginning of last month:
    • Site-wide: 22,381 out of 57,915

The origins and relatedness structure of mixed infections vary with local prevalence of P. falciparum malaria

epidemiology more details view paper
  • Downloaded 568 times
  • Download rankings, all-time:
    • Site-wide: 15,044 out of 57,915
    • In epidemiology: 173 out of 1,556
  • Year to date:
    • Site-wide: 9,899 out of 57,915
  • Since beginning of last month:
    • Site-wide: 21,588 out of 57,915

HLA*PRG:LA - HLA typing from linearly projected graph alignments

bioinformatics more details view paper
  • Downloaded 542 times
  • Download rankings, all-time:
    • Site-wide: 15,970 out of 57,915
    • In bioinformatics: 2,507 out of 5,899
  • Year to date:
    • Site-wide: 12,079 out of 57,915
  • Since beginning of last month:
    • Site-wide: 18,789 out of 57,915

Mapping the drivers of within-host pathogen evolution using massive data sets

genetics more details view paper
  • Downloaded 465 times
  • Download rankings, all-time:
    • Site-wide: 19,234 out of 57,915
    • In genetics: 1,317 out of 3,319
  • Year to date:
    • Site-wide: 48,689 out of 57,915
  • Since beginning of last month:
    • Site-wide: 51,954 out of 57,915

Coupling Wright-Fisher and coalescent dynamics for realistic simulation of population-scale datasets

evolutionary biology more details view paper
  • Downloaded 449 times
  • Download rankings, all-time:
    • Site-wide: 20,068 out of 57,915
    • In evolutionary biology: 1,532 out of 3,970
  • Year to date:
    • Site-wide: 4,412 out of 57,915
  • Since beginning of last month:
    • Site-wide: 3,772 out of 57,915

Detection of simple and complex de novo mutations without, with, or with multiple reference sequences

bioinformatics more details view paper
  • Downloaded 227 times
  • Download rankings, all-time:
    • Site-wide: 37,255 out of 57,915
    • In bioinformatics: 4,505 out of 5,899
  • Year to date:
    • Site-wide: 13,011 out of 57,915
  • Since beginning of last month:
    • Site-wide: 1,153 out of 57,915

Selfish mutations dysregulating RAS-MAPK signaling are pervasive in aged human testes

genetics more details view paper
  • Downloaded 206 times
  • Download rankings, all-time:
    • Site-wide: 39,746 out of 57,915
    • In genetics: 2,457 out of 3,319
  • Year to date:
    • Site-wide: 52,752 out of 57,915
  • Since beginning of last month:
    • Site-wide: 53,308 out of 57,915

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