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Author: Abhyudai Singh

Rankings

  • All-time downloads: 22,777 (rank: 7,343 )
  • Categories:
    • biophysics: 954 (rank: 5,006 (tie) )
    • cell biology: 781 (rank: 11,404 (tie) )
    • ecology: 603 (rank: 7,015 (tie) )
    • evolutionary biology: 170 (rank: 22,197 (tie) )
    • genomics: 389 (rank: 38,834 (tie) )
    • microbiology: 646 (rank: 21,166 (tie) )
    • molecular biology: 1,534 (rank: 3,324 (tie) )
    • neuroscience: 859 (rank: 26,850 (tie) )
    • synthetic biology: 398 (rank: 4,019 (tie) )
    • systems biology: 16,443 (rank: 162 )

Downloads per author, site-wide

Preprints

Memory sequencing reveals heritable single cell gene expression programs associated with distinct cellular behaviors

systems biology more details view paper
  • Downloaded 4,757 times
  • Download rankings, all-time:
    • Site-wide: 2,161
    • In systems biology: 28
  • Year to date:
    • Site-wide: 11,317
  • Since beginning of last month:
    • Site-wide: 8,244

Gene networks with transcriptional bursting recapitulate rare transient coordinated expression states in cancer

systems biology more details view paper
  • Downloaded 1,191 times
  • Download rankings, all-time:
    • Site-wide: 16,365
    • In systems biology: 328
  • Year to date:
    • Site-wide: 54,096
  • Since beginning of last month:
    • Site-wide: 49,002

Controlling noise in the timing of intracellular events: A first-passage time approach

biophysics more details view paper
  • Downloaded 744 times
  • Download rankings, all-time:
    • Site-wide: 32,171
    • In biophysics: 992
  • Year to date:
    • Site-wide: 127,477
  • Since beginning of last month:
    • Site-wide: 113,723

Transcription coordinates histone amounts and genome content

molecular biology more details view paper
  • Downloaded 667 times
  • Download rankings, all-time:
    • Site-wide: 37,274
    • In molecular biology: 1,042
  • Year to date:
    • Site-wide: 31,740
  • Since beginning of last month:
    • Site-wide: 35,778

Transcriptional bursting explains the noise-versus-mean relationship in mRNA and protein levels

systems biology more details view paper
  • Downloaded 645 times
  • Download rankings, all-time:
    • Site-wide: 38,983
    • In systems biology: 887
  • Year to date:
    • Site-wide: 134,866
  • Since beginning of last month:
    • Site-wide: 132,543

A mechanistic first-passage time framework for bacterial cell-division timing

systems biology more details view paper
  • Downloaded 606 times
  • Download rankings, all-time:
    • Site-wide: 42,140
    • In systems biology: 960
  • Year to date:
    • Site-wide: 106,216
  • Since beginning of last month:
    • Site-wide: 113,533

Modeling noise mechanisms in neuronal synaptic transmission

neuroscience more details view paper
  • Downloaded 596 times
  • Download rankings, all-time:
    • Site-wide: 43,076
    • In neuroscience: 6,159
  • Year to date:
    • Site-wide: 95,112
  • Since beginning of last month:
    • Site-wide: 114,444

Analysis of noise mechanisms in cell size control

systems biology more details view paper
  • Downloaded 567 times
  • Download rankings, all-time:
    • Site-wide: 45,828
    • In systems biology: 1,053
  • Year to date:
    • Site-wide: 80,739
  • Since beginning of last month:
    • Site-wide: 85,297

Subcellular localization of the J-protein Sis1 regulates the heat shock response

cell biology more details view paper
  • Downloaded 562 times
  • Download rankings, all-time:
    • Site-wide: 46,301
    • In cell biology: 1,986
  • Year to date:
    • Site-wide: 48,308
  • Since beginning of last month:
    • Site-wide: 87,861

High Cooperativity In Negative Feedback Can Amplify Noisy Gene Expression

systems biology more details view paper
  • Downloaded 551 times
  • Download rankings, all-time:
    • Site-wide: 47,421
    • In systems biology: 1,096
  • Year to date:
    • Site-wide: 88,766
  • Since beginning of last month:
    • Site-wide: 95,009

Some remarks on moments for stochastic chemical kinetics

systems biology more details view paper
  • Downloaded 527 times
  • Download rankings, all-time:
    • Site-wide: 50,021
    • In systems biology: 1,150
  • Year to date:
    • Site-wide: 107,870
  • Since beginning of last month:
    • Site-wide: 97,784

Hybrid systems approach to modeling stochastic dynamics of cell size

systems biology more details view paper
  • Downloaded 523 times
  • Download rankings, all-time:
    • Site-wide: 50,499
    • In systems biology: 1,167
  • Year to date:
    • Site-wide: 114,716
  • Since beginning of last month:
    • Site-wide: 120,860

Optimal feedback mechanisms for regulating cell numbers

systems biology more details view paper
  • Downloaded 502 times
  • Download rankings, all-time:
    • Site-wide: 52,998
    • In systems biology: 1,248
  • Year to date:
    • Site-wide: 103,719
  • Since beginning of last month:
    • Site-wide: 95,861

Buffering gene expression noise by microRNA based feedforward regulation

systems biology more details view paper
  • Downloaded 498 times
  • Download rankings, all-time:
    • Site-wide: 53,420
    • In systems biology: 1,263
  • Year to date:
    • Site-wide: 109,559
  • Since beginning of last month:
    • Site-wide: 128,928

Noise suppression in cell-size control

systems biology more details view paper
  • Downloaded 491 times
  • Download rankings, all-time:
    • Site-wide: 54,366
    • In systems biology: 1,291
  • Year to date:
    • Site-wide: 112,279
  • Since beginning of last month:
    • Site-wide: 94,850

Stochastic Analysis Of An Incoherent Feedforward Genetic Motif

molecular biology more details view paper
  • Downloaded 461 times
  • Download rankings, all-time:
    • Site-wide: 58,196
    • In molecular biology: 1,666
  • Year to date:
    • Site-wide: 95,540
  • Since beginning of last month:
    • Site-wide: 102,988

Extrinsic Noise Suppression in Micro RNA Mediated Incoherent Feedforward Loops

systems biology more details view paper
  • Downloaded 414 times
  • Download rankings, all-time:
    • Site-wide: 64,985
    • In systems biology: 1,559
  • Year to date:
    • Site-wide: 133,833
  • Since beginning of last month:
    • Site-wide: 129,429

Cell volume homeostatically controls the rDNA repeat copy number and rRNA synthesis rate in yeast

molecular biology more details view paper
  • Downloaded 406 times
  • Download rankings, all-time:
    • Site-wide: 66,236
    • In molecular biology: 1,924
  • Year to date:
    • Site-wide: 72,904
  • Since beginning of last month:
    • Site-wide: 56,095

An approximate derivate-based controller for regulating gene expression

synthetic biology more details view paper
  • Downloaded 398 times
  • Download rankings, all-time:
    • Site-wide: 67,563
    • In synthetic biology: 776
  • Year to date:
    • Site-wide: 125,607
  • Since beginning of last month:
    • Site-wide: 104,800

Enhancement of gene expression noise due to nonspecific transcription factor binding

systems biology more details view paper
  • Downloaded 365 times
  • Download rankings, all-time:
    • Site-wide: 73,227
    • In systems biology: 1,753
  • Year to date:
    • Site-wide: 132,423
  • Since beginning of last month:
    • Site-wide: 134,812

Kinetics of HTLV-1 reactivation from latency quantified by single-molecule RNA FISH and stochastic modelling

microbiology more details view paper
  • Downloaded 346 times
  • Download rankings, all-time:
    • Site-wide: 76,742
    • In microbiology: 5,269
  • Year to date:
    • Site-wide: 109,717
  • Since beginning of last month:
    • Site-wide: 103,677

Cell-cycle coupled expression minimizes random fluctuations in gene product levels

systems biology more details view paper
  • Downloaded 341 times
  • Download rankings, all-time:
    • Site-wide: 77,663
    • In systems biology: 1,849
  • Year to date:
    • Site-wide: 128,529
  • Since beginning of last month:
    • Site-wide: 132,531

Autoregulation of pre-mRNA processing for buffering noisy gene expression

systems biology more details view paper
  • Downloaded 337 times
  • Download rankings, all-time:
    • Site-wide: 78,476
    • In systems biology: 1,872
  • Year to date:
    • Site-wide: 124,019
  • Since beginning of last month:
    • Site-wide: 103,861

Controlling noisy expression through auto regulation of burst frequency and protein stability

systems biology more details view paper
  • Downloaded 320 times
  • Download rankings, all-time:
    • Site-wide: 81,689
    • In systems biology: 1,954
  • Year to date:
    • Site-wide: 133,713
  • Since beginning of last month:
    • Site-wide: 117,948

Cell volume distributions in exponentially growing populations

systems biology more details view paper
  • Downloaded 311 times
  • Download rankings, all-time:
    • Site-wide: 83,501
    • In systems biology: 1,995
  • Year to date:
    • Site-wide: 125,038
  • Since beginning of last month:
    • Site-wide: 102,808

Noise induced bimodality in genetic circuits with monostable positive feedback

systems biology more details view paper
  • Downloaded 309 times
  • Download rankings, all-time:
    • Site-wide: 83,843
    • In systems biology: 2,005
  • Year to date:
    • Site-wide: 131,515
  • Since beginning of last month:
    • Site-wide: 121,188

Synaptic transmission may provide an evolutionary benefit to HIV through modulation of latency

microbiology more details view paper
  • Downloaded 300 times
  • Download rankings, all-time:
    • Site-wide: 85,783
    • In microbiology: 6,043
  • Year to date:
    • Site-wide: 120,739
  • Since beginning of last month:
    • Site-wide: 122,919

Channel Capacity Computations for Unregulated and Autoregulated Gene Expression

systems biology more details view paper
  • Downloaded 282 times
  • Download rankings, all-time:
    • Site-wide: 89,768
    • In systems biology: 2,106
  • Year to date:
    • Site-wide: 114,324
  • Since beginning of last month:
    • Site-wide: 108,906

Analysis of stochastic timing of intracellular events with gene switching

systems biology more details view paper
  • Downloaded 281 times
  • Download rankings, all-time:
    • Site-wide: 89,856
    • In systems biology: 2,114
  • Year to date:
    • Site-wide: 120,111
  • Since beginning of last month:
    • Site-wide: 120,864

Joint regulation of growth and division timing drives size homeostasis in proliferating animal cells

systems biology more details view paper
  • Downloaded 267 times
  • Download rankings, all-time:
    • Site-wide: 92,933
    • In systems biology: 2,174
  • Year to date:
    • Site-wide: 133,173
  • Since beginning of last month:
    • Site-wide: 129,221

Characterizing neuronal synaptic transmission using stochastic hybrid systems

neuroscience more details view paper
  • Downloaded 263 times
  • Download rankings, all-time:
    • Site-wide: 93,879
    • In neuroscience: 14,534
  • Year to date:
    • Site-wide: 125,326
  • Since beginning of last month:
    • Site-wide: 114,450

Stochastic delays suppress noise in a genetic circuit with negative feedback

systems biology more details view paper
  • Downloaded 239 times
  • Download rankings, all-time:
    • Site-wide: 99,208
    • In systems biology: 2,296
  • Year to date:
    • Site-wide: 113,118
  • Since beginning of last month:
    • Site-wide: 89,744

Cell size statistics in cell lineages and population snapshots with different growth regimes and division strategies.

systems biology more details view paper
  • Downloaded 238 times
  • Download rankings, all-time:
    • Site-wide: 99,327
    • In systems biology: 2,302
  • Year to date:
    • Site-wide: 90,124
  • Since beginning of last month:
    • Site-wide: 99,783

Noise Analysis in Biochemical Complex Formation

systems biology more details view paper
  • Downloaded 237 times
  • Download rankings, all-time:
    • Site-wide: 99,508
    • In systems biology: 2,304
  • Year to date:
    • Site-wide: 131,667
  • Since beginning of last month:
    • Site-wide: 113,409

Optimal bang--bang feedback for bursty gene expression

systems biology more details view paper
  • Downloaded 227 times
  • Download rankings, all-time:
    • Site-wide: 101,800
    • In systems biology: 2,355
  • Year to date:
    • Site-wide: 132,666
  • Since beginning of last month:
    • Site-wide: 126,616

A transient heritable memory regulates HIV reactivation from latency

cell biology more details view paper
  • Downloaded 219 times
  • Download rankings, all-time:
    • Site-wide: 103,585
    • In cell biology: 4,824
  • Year to date:
    • Site-wide: 47,350
  • Since beginning of last month:
    • Site-wide: 87,360

Xrn1 influence on gene transcription results from the combination of general effects on elongating RNA pol II and gene-specific chromatin configuration

genomics more details view paper
  • Downloaded 217 times
  • Download rankings, all-time:
    • Site-wide: 104,001
    • In genomics: 6,108
  • Year to date:
    • Site-wide: 68,652
  • Since beginning of last month:
    • Site-wide: 71,412

Mixture distributions in a stochastic gene expression model with delayed feedback

systems biology more details view paper
  • Downloaded 211 times
  • Download rankings, all-time:
    • Site-wide: 105,409
    • In systems biology: 2,415
  • Year to date:
    • Site-wide: 121,535
  • Since beginning of last month:
    • Site-wide: 90,670

Optimum Threshold Minimizes Noise in Timing of Intracellular Events

biophysics more details view paper
  • Downloaded 210 times
  • Download rankings, all-time:
    • Site-wide: 105,672
    • In biophysics: 4,072
  • Year to date:
    • Site-wide: 129,226
  • Since beginning of last month:
    • Site-wide: 104,907

Stationary distributions and metastable behaviour for self-regulating proteins with general lifetime distributions

systems biology more details view paper
  • Downloaded 208 times
  • Download rankings, all-time:
    • Site-wide: 106,111
    • In systems biology: 2,425
  • Year to date:
    • Site-wide: 104,837
  • Since beginning of last month:
    • Site-wide: 74,968

The role of incoherent feedforward circuits in regulating precision of event timing

systems biology more details view paper
  • Downloaded 200 times
  • Download rankings, all-time:
    • Site-wide: 107,985
    • In systems biology: 2,460
  • Year to date:
    • Site-wide: 97,632
  • Since beginning of last month:
    • Site-wide: 90,178

Cell size distribution of lineage data: analytic results and parameter inference

systems biology more details view paper
  • Downloaded 191 times
  • Download rankings, all-time:
    • Site-wide: 109,876
    • In systems biology: 2,498
  • Year to date:
    • Site-wide: 36,378
  • Since beginning of last month:
    • Site-wide: 109,123

Noise propagation in gene expression in the presence of decoys

systems biology more details view paper
  • Downloaded 184 times
  • Download rankings, all-time:
    • Site-wide: 111,368
    • In systems biology: 2,525
  • Year to date:
    • Site-wide: 101,892
  • Since beginning of last month:
    • Site-wide: 98,578

Identifying Mechanisms of Regulation to Model Carbon Flux During Heat Stress And Generate Testable Hypotheses

genomics more details view paper
  • Downloaded 172 times
  • Download rankings, all-time:
    • Site-wide: 114,143
    • In genomics: 6,399
  • Year to date:
    • Site-wide: 133,391
  • Since beginning of last month:
    • Site-wide: 131,799

An optimal lysis time maximizes bacteriophage fitness in quasi-continuous culture

evolutionary biology more details view paper
  • Downloaded 170 times
  • Download rankings, all-time:
    • Site-wide: 114,502
    • In evolutionary biology: 5,945
  • Year to date:
    • Site-wide: 46,483
  • Since beginning of last month:
    • Site-wide: 54,277

Hybrid systems modeling of ecological population dynamics

ecology more details view paper
  • Downloaded 167 times
  • Download rankings, all-time:
    • Site-wide: 115,167
    • In ecology: 4,027
  • Year to date:
    • Site-wide: 102,099
  • Since beginning of last month:
    • Site-wide: 64,192

Global redistribution and local migration in semi-discrete host-parasitoid population dynamic models.

ecology more details view paper
  • Downloaded 127 times
  • Download rankings, all-time:
    • Site-wide: 123,330
    • In ecology: 4,415
  • Year to date:
    • Site-wide: 132,777
  • Since beginning of last month:
    • Site-wide: 127,227

A modified fluctuation test for elucidating drug resistance in microbial and cancer cells

systems biology more details view paper
  • Downloaded 111 times
  • Download rankings, all-time:
    • Site-wide: 126,319
    • In systems biology: 2,756
  • Year to date:
    • Site-wide: 83,986
  • Since beginning of last month:
    • Site-wide: 50,863

Division stochasticity can be transmitted to protein expression through chromosome replication

systems biology more details view paper
  • Downloaded 107 times
  • Download rankings, all-time:
    • Site-wide: 127,149
    • In systems biology: 2,767
  • Year to date:
    • Site-wide: 118,927
  • Since beginning of last month:
    • Site-wide: 106,147

Role of intercellular coupling and delay on the synchronization of genetic oscillators

systems biology more details view paper
  • Downloaded 106 times
  • Download rankings, all-time:
    • Site-wide: 127,197
    • In systems biology: 2,769
  • Year to date:
    • Site-wide: 94,329
  • Since beginning of last month:
    • Site-wide: 128,412

Role of periodic forcing on the stochastic dynamics of a biomolecular clock

systems biology more details view paper
  • Downloaded 99 times
  • Download rankings, all-time:
    • Site-wide: 128,532
    • In systems biology: 2,786
  • Year to date:
    • Site-wide: 94,856
  • Since beginning of last month:
    • Site-wide: 91,502

Stochastic dynamics of consumer-resource interactions

ecology more details view paper
  • Downloaded 88 times
  • Download rankings, all-time:
    • Site-wide: 130,281
    • In ecology: 4,845
  • Year to date:
    • Site-wide: 32,134
  • Since beginning of last month:
    • Site-wide: 66,744

Population dynamics of multi-host communities attacked by a common parasitoid

ecology more details view paper
  • Downloaded 85 times
  • Download rankings, all-time:
    • Site-wide: 130,717
    • In ecology: 4,871
  • Year to date:
    • Site-wide: 33,275
  • Since beginning of last month:
    • Site-wide: 62,043

Generalized conditions for coexistence of competing parasitoids on a shared host

ecology more details view paper
  • Downloaded 74 times
  • Download rankings, all-time:
    • Site-wide: 132,178
    • In ecology: 4,951
  • Year to date:
    • Site-wide: 71,313
  • Since beginning of last month:
    • Site-wide: 100,608

Fluctuations in population densities inform stability mechanisms in host-parasitoid interactions

ecology more details view paper
  • Downloaded 62 times
  • Download rankings, all-time:
    • Site-wide: 133,583
    • In ecology: 5,042
  • Year to date:
    • Site-wide: 44,717
  • Since beginning of last month:
    • Site-wide: 66,666

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