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Author: Christophe Fraser

Rankings

  • All-time downloads: 71,043 (rank: 2,672 )
  • Categories:
    • bioinformatics: 1,218 (rank: 15,029 (tie) )
    • epidemiology: 53,290 (rank: 417 )
    • evolutionary biology: 6,847 (rank: 453 (tie) )
    • genomics: 7,107 (rank: 3,445 (tie) )
    • hiv aids: 811 (rank: 232 )
    • infectious diseases: 1,770 (rank: 21,430 )

Downloads per author, site-wide

Preprints

Modeling the combined effect of digital exposure notification and non-pharmaceutical interventions on the COVID-19 epidemic in Washington state

epidemiology more details view paper
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    • Site-wide: 319
    • In epidemiology: 62
  • Year to date:
    • Site-wide: 1,557
  • Since beginning of last month:
    • Site-wide: 6,561

Quantifying dynamics of SARS-CoV-2 transmission suggests that epidemic control and avoidance is feasible through instantaneous digital contact tracing

epidemiology more details view paper
  • Downloaded 8,696 times
  • Download rankings, all-time:
    • Site-wide: 1,293
    • In epidemiology: 168
  • Year to date:
    • Site-wide: 7,090
  • Since beginning of last month:
    • Site-wide: 28,328

The timing of COVID-19 transmission

epidemiology more details view paper
  • Downloaded 8,505 times
  • Download rankings, all-time:
    • Site-wide: 1,328
    • In epidemiology: 171
  • Year to date:
    • Site-wide: 1,186
  • Since beginning of last month:
    • Site-wide: 1,134

Within-host genomics of SARS-CoV-2

genomics more details view paper
  • Downloaded 5,397 times
  • Download rankings, all-time:
    • Site-wide: 2,407
    • In genomics: 210
  • Year to date:
    • Site-wide: 2,754
  • Since beginning of last month:
    • Site-wide: 14,856

Virus genomes reveal the factors that spread and sustained the West African Ebola epidemic.

epidemiology more details view paper
  • Downloaded 2,554 times
  • Download rankings, all-time:
    • Site-wide: 6,968
    • In epidemiology: 591
  • Year to date:
    • Site-wide: 73,576
  • Since beginning of last month:
    • Site-wide: 93,189

OpenABM-Covid19 - an agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing

epidemiology more details view paper
  • Downloaded 2,056 times
  • Download rankings, all-time:
    • Site-wide: 9,566
    • In epidemiology: 762
  • Year to date:
    • Site-wide: 5,520
  • Since beginning of last month:
    • Site-wide: 29,747

COVID-19 incidence and R decreased on the Isle of Wight after the launch of the Test, Trace, Isolate programme

epidemiology more details view paper
  • Downloaded 1,787 times
  • Download rankings, all-time:
    • Site-wide: 11,831
    • In epidemiology: 889
  • Year to date:
    • Site-wide: 33,267
  • Since beginning of last month:
    • Site-wide: 31,746

A comprehensive genomics solution for HIV surveillance and clinical monitoring in a global health setting

genomics more details view paper
  • Downloaded 1,710 times
  • Download rankings, all-time:
    • Site-wide: 12,620
    • In genomics: 1,262
  • Year to date:
    • Site-wide: 48,778
  • Since beginning of last month:
    • Site-wide: 62,102

Early Analysis of a potential link between viral load and the N501Y mutation in the SARS-COV-2 spike protein

infectious diseases more details view paper
  • Downloaded 1,348 times
  • Download rankings, all-time:
    • Site-wide: 18,199
    • In infectious diseases: 1,959
  • Year to date:
    • Site-wide: 3,480
  • Since beginning of last month:
    • Site-wide: 39,325

Predicting evolution using frequency-dependent selection in bacterial populations

evolutionary biology more details view paper
  • Downloaded 1,338 times
  • Download rankings, all-time:
    • Site-wide: 18,387
    • In evolutionary biology: 621
  • Year to date:
    • Site-wide: 77,293
  • Since beginning of last month:
    • Site-wide: 84,079

Easy and Accurate Reconstruction of Whole HIV Genomes from Short-Read Sequence Data

bioinformatics more details view paper
  • Downloaded 1,218 times
  • Download rankings, all-time:
    • Site-wide: 21,228
    • In bioinformatics: 2,399
  • Year to date:
    • Site-wide: 133,134
  • Since beginning of last month:
    • Site-wide: 129,173

Genomic infectious disease epidemiology in partially sampled and ongoing outbreaks

epidemiology more details view paper
  • Downloaded 1,146 times
  • Download rankings, all-time:
    • Site-wide: 23,234
    • In epidemiology: 1,409
  • Year to date:
    • Site-wide: 148,315
  • Since beginning of last month:
    • Site-wide: 154,509

PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity

evolutionary biology more details view paper
  • Downloaded 1,119 times
  • Download rankings, all-time:
    • Site-wide: 24,125
    • In evolutionary biology: 932
  • Year to date:
    • Site-wide: 138,396
  • Since beginning of last month:
    • Site-wide: 136,486

Evolution of HIV virulence in response to widespread scale up of antiretroviral therapy: a modeling study

evolutionary biology more details view paper
  • Downloaded 937 times
  • Download rankings, all-time:
    • Site-wide: 31,460
    • In evolutionary biology: 1,325
  • Year to date:
    • Site-wide: 127,003
  • Since beginning of last month:
    • Site-wide: 154,046

On the evolutionary ecology of multidrug resistance in bacteria

evolutionary biology more details view paper
  • Downloaded 899 times
  • Download rankings, all-time:
    • Site-wide: 33,437
    • In evolutionary biology: 1,427
  • Year to date:
    • Site-wide: 141,969
  • Since beginning of last month:
    • Site-wide: 140,903

Coalescent models for populations with time-varying population sizes and arbitrary offspring distributions

evolutionary biology more details view paper
  • Downloaded 856 times
  • Download rankings, all-time:
    • Site-wide: 35,872
    • In evolutionary biology: 1,558
  • Year to date:
    • Site-wide: 87,380
  • Since beginning of last month:
    • Site-wide: 72,268

Host population structure and treatment frequency maintain balancing selection on drug resistance

evolutionary biology more details view paper
  • Downloaded 534 times
  • Download rankings, all-time:
    • Site-wide: 67,811
    • In evolutionary biology: 3,362
  • Year to date:
    • Site-wide: 162,900
  • Since beginning of last month:
    • Site-wide: 149,798

Frequent recombination of pneumococcal capsule highlights future risks of emergence of novel serotypes.

evolutionary biology more details view paper
  • Downloaded 526 times
  • Download rankings, all-time:
    • Site-wide: 69,048
    • In evolutionary biology: 3,429
  • Year to date:
    • Site-wide: 123,684
  • Since beginning of last month:
    • Site-wide: 113,547

Modelling the effectiveness and social costs of daily lateral flow antigen tests versus quarantine in preventing onward transmission of COVID-19 from traced contacts

epidemiology more details view paper
  • Downloaded 516 times
  • Download rankings, all-time:
    • Site-wide: 70,687
    • In epidemiology: 3,147
  • Year to date:
    • Site-wide: 15,229
  • Since beginning of last month:
    • Site-wide: 11,147

Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae

evolutionary biology more details view paper
  • Downloaded 476 times
  • Download rankings, all-time:
    • Site-wide: 77,376
    • In evolutionary biology: 3,881
  • Year to date:
    • Site-wide: 157,720
  • Since beginning of last month:
    • Site-wide: 150,701

Bimodal distribution and set point HBV DNA viral loads in chronic infection: retrospective analysis of cohorts from the UK and South Africa

infectious diseases more details view paper
  • Downloaded 422 times
  • Download rankings, all-time:
    • Site-wide: 87,823
    • In infectious diseases: 4,379
  • Year to date:
    • Site-wide: 85,146
  • Since beginning of last month:
    • Site-wide: 80,579

PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial

hiv aids more details view paper
  • Downloaded 408 times
  • Download rankings, all-time:
    • Site-wide: 90,789
    • In hiv aids: 45
  • Year to date:
    • Site-wide: 56,103
  • Since beginning of last month:
    • Site-wide: 97,115

Mixing patterns of HIV transmission among men who have sex with men in the United Kingdom

epidemiology more details view paper
  • Downloaded 386 times
  • Download rankings, all-time:
    • Site-wide: 95,487
    • In epidemiology: 4,081
  • Year to date:
    • Site-wide: 155,688
  • Since beginning of last month:
    • Site-wide: 150,414

Link between the numbers of particles and variants founding new HIV-1 infections depends on the timing of transmission

epidemiology more details view paper
  • Downloaded 339 times
  • Download rankings, all-time:
    • Site-wide: 106,633
    • In epidemiology: 4,526
  • Year to date:
    • Site-wide: 130,517
  • Since beginning of last month:
    • Site-wide: 117,560

Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial -- BCPP/ Ya Tsie trial

hiv aids more details view paper
  • Downloaded 312 times
  • Download rankings, all-time:
    • Site-wide: 113,588
    • In hiv aids: 73
  • Year to date:
    • Site-wide: 32,655
  • Since beginning of last month:
    • Site-wide: 20,570

Modelling the impact of rapid tests, tracing and distancing in lower-income countries suggest optimal policies varies with rural-urban settings

epidemiology more details view paper
  • Downloaded 293 times
  • Download rankings, all-time:
    • Site-wide: 118,313
    • In epidemiology: 5,007
  • Year to date:
    • Site-wide: 35,575
  • Since beginning of last month:
    • Site-wide: 70,668

Epidemiological dynamics of bacteriocin competition and antibiotic resistance

evolutionary biology more details view paper
  • Downloaded 162 times
  • Download rankings, all-time:
    • Site-wide: 150,780
    • In evolutionary biology: 7,171
  • Year to date:
    • Site-wide: 120,596
  • Since beginning of last month:
    • Site-wide: 106,349

Demographic characteristics of sources of HIV-1 transmission in Zambia

hiv aids more details view paper
  • Downloaded 91 times
  • Download rankings, all-time:
    • Site-wide: 161,277
    • In hiv aids: 200
  • Year to date:
    • Site-wide: 122,636
  • Since beginning of last month:
    • Site-wide: 20,515

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