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Author: Soumya Raychaudhuri

Rankings

  • All-time downloads: 60,743 (rank: 2,635 )
  • Categories:
    • bioinformatics: 14,894 (rank: 475 )
    • genetic and genomic medicine: 1,903 (rank: 1,758 (tie) )
    • genetics: 28,926 (rank: 226 )
    • genomics: 7,371 (rank: 3,131 )
    • hiv aids: 1,578 (rank: 70 (tie) )
    • immunology: 5,591 (rank: 1,764 )
    • rheumatology: 480 (rank: 655 (tie) )

Downloads per author, site-wide

Preprints

Fast, sensitive, and accurate integration of single cell data with Harmony

bioinformatics more details view paper
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Partitioning heritability by functional category using GWAS summary statistics

genetics more details view paper
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    • Site-wide: 1,242
    • In genetics: 33
  • Year to date:
    • Site-wide: 12,256
  • Since beginning of last month:
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Regulatory variants explain much more heritability than coding variants across 11 common diseases

genetics more details view paper
  • Downloaded 4,487 times
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    • Site-wide: 2,735
    • In genetics: 91
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    • Site-wide: 97,969

Estimating heritability and its enrichment in tissue-specific gene sets in admixed populations

genetics more details view paper
  • Downloaded 2,796 times
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    • Site-wide: 5,361
    • In genetics: 221
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Large scale genome-wide association study in a Japanese population identified 45 novel susceptibility loci for 22 diseases

genetics more details view paper
  • Downloaded 2,549 times
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    • Site-wide: 6,136
    • In genetics: 261
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Efficient and precise single-cell reference atlas mapping with Symphony

bioinformatics more details view paper
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    • Site-wide: 7,835
    • In bioinformatics: 895
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Cross-tissue, single-cell stromal atlas identifies shared pathological fibroblast phenotypes in four chronic inflammatory diseases

genomics more details view paper
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    • In genomics: 824
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    • Site-wide: 1,131
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Mixed Effects Association of Single Cells Identifies an Expanded Th1-Skewed Cytotoxic Effector CD4+ T Cell Subset in Rheumatoid Arthritis

bioinformatics more details view paper
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Population-specific causal disease effect sizes in functionally important regions impacted by selection

genetics more details view paper
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    • Site-wide: 10,194
    • In genetics: 452
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A high-resolution HLA reference panel capturing global population diversity enables multi-ethnic fine-mapping in HIV host response

hiv aids more details view paper
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    • Site-wide: 12,394
    • In hiv aids: 7
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    • Site-wide: 5,172
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IL-1-driven stromal-neutrophil interaction in deep ulcers defines a pathotype of therapy non-responsive inflammatory bowel disease

immunology more details view paper
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    • Site-wide: 13,185
    • In immunology: 418
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    • Site-wide: 1,772
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Fine-mapping identifies causal variants for RA and T1D in DNASE1L3, SIRPG, MEG3, TNFAIP3 and CD28/CTLA4 loci

genetics more details view paper
  • Downloaded 1,491 times
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    • Site-wide: 13,499
    • In genetics: 616
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IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 and other diseases with tissue inflammation

genomics more details view paper
  • Downloaded 1,486 times
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    • Site-wide: 13,559
    • In genomics: 1,386
  • Year to date:
    • Site-wide: 8,137
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Cross-disorder analysis of schizophrenia and 19 immune diseases reveals genetic correlation

genetics more details view paper
  • Downloaded 1,472 times
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    • Site-wide: 13,759
    • In genetics: 631
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    • Site-wide: 85,199
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In silico integration of thousands of epigenetic datasets into 707 cell type regulatory annotations improves the trans-ethnic portability of polygenic risk scores

genetics more details view paper
  • Downloaded 1,437 times
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    • Site-wide: 14,283
    • In genetics: 655
  • Year to date:
    • Site-wide: 35,849
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    • Site-wide: 117,616

A genome-wide innateness gradient defines the functional state of human innate T cells

immunology more details view paper
  • Downloaded 1,162 times
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    • Site-wide: 19,590
    • In immunology: 646
  • Year to date:
    • Site-wide: 76,346
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    • Site-wide: 31,707

Discovering in vivo cytokine eQTL interactions from a lupus clinical trial

genomics more details view paper
  • Downloaded 1,155 times
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    • Site-wide: 19,803
    • In genomics: 1,921
  • Year to date:
    • Site-wide: 113,664
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    • Site-wide: 97,085

IMPACT: Genomic annotation of cell-state-specific regulatory elements inferred from the epigenome of bound transcription factors

genetics more details view paper
  • Downloaded 1,145 times
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    • Site-wide: 20,050
    • In genetics: 927
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    • Site-wide: 125,452
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Using genotype data to distinguish pleiotropy from heterogeneity: deciphering coheritability in autoimmune and neuropsychiatric diseases

genomics more details view paper
  • Downloaded 1,072 times
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    • Site-wide: 22,103
    • In genomics: 2,104
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    • Site-wide: 113,990
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Allele-specific expression changes dynamically during T cell activation in HLA and other autoimmune loci

genomics more details view paper
  • Downloaded 1,017 times
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    • Site-wide: 23,862
    • In genomics: 2,252
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    • Site-wide: 78,984
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Axes of inter-sample variability among transcriptional neighborhoods reveal disease associated cell states in single-cell data

bioinformatics more details view paper
  • Downloaded 1,008 times
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    • Site-wide: 24,170
    • In bioinformatics: 2,768
  • Year to date:
    • Site-wide: 3,112
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    • Site-wide: 6,998

Genes with high network connectivity are enriched for disease heritability

genetics more details view paper
  • Downloaded 951 times
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    • Site-wide: 26,368
    • In genetics: 1,206
  • Year to date:
    • Site-wide: 126,825
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Presto scales Wilcoxon and auROC analyses to millions of observations

bioinformatics more details view paper
  • Downloaded 877 times
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    • Site-wide: 29,521
    • In bioinformatics: 3,327
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    • Site-wide: 20,904
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HBEGF+ macrophages identified in rheumatoid arthritis promote joint tissue invasiveness and are reshaped differentially by medications

immunology more details view paper
  • Downloaded 774 times
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    • Site-wide: 35,130
    • In immunology: 1,099
  • Year to date:
    • Site-wide: 76,394
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    • Site-wide: 63,614

Multimodal memory T cell profiling identifies a reduction in a polyfunctional Th17 state associated with tuberculosis progression

immunology more details view paper
  • Downloaded 765 times
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    • Site-wide: 35,755
    • In immunology: 1,113
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CUX1 and IκBζ mediate the synergistic inflammatory response to TNF and IL-17A in stromal fibroblasts

immunology more details view paper
  • Downloaded 717 times
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    • Site-wide: 39,076
    • In immunology: 1,214
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    • Site-wide: 113,575
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Progression of recent Mycobacterium tuberculosis exposure to active tuberculosis is a highly heritable complex trait driven by 3q23 in Peruvians

genetics more details view paper
  • Downloaded 712 times
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    • Site-wide: 39,457
    • In genetics: 1,773
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    • Site-wide: 80,120
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Novel protective associations with age-related macular degeneration: A common variant near CTRB1 and a rare variant in PELI3

genetics more details view paper
  • Downloaded 668 times
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    • Site-wide: 42,910
    • In genetics: 1,921
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    • Site-wide: 106,400
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New susceptibility loci for severe COVID-19 by detailed GWAS analysis in European populations

genetic and genomic medicine more details view paper
  • Downloaded 614 times
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    • Site-wide: 47,717
    • In genetic and genomic medicine: 190
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HLA autoimmune risk alleles restrict the hypervariable region of T cell receptors

genetic and genomic medicine more details view paper
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    • Site-wide: 48,873
    • In genetic and genomic medicine: 198
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Genome-wide study identifies association between HLA-B*55:01 and penicillin allergy

genetics more details view paper
  • Downloaded 594 times
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    • Site-wide: 49,813
    • In genetics: 2,216
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Benchmarker: an unbiased, association-data-driven strategy to evaluate gene prioritization algorithms

genomics more details view paper
  • Downloaded 501 times
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    • Site-wide: 61,147
    • In genomics: 4,430
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    • Site-wide: 118,397
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Leveraging single-cell ATAC-seq to identify disease-critical fetal and adult brain cell types

genetics more details view paper
  • Downloaded 491 times
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    • Site-wide: 62,460
    • In genetics: 2,766
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    • Site-wide: 8,862
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Integration of urine proteomics and renal single-cell genomics identifies an interferon-gamma response gradient in lupus nephritis.

rheumatology more details view paper
  • Downloaded 480 times
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    • Site-wide: 64,076
    • In rheumatology: 48
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Higher Native Peruvian ancestry proportion is associated with tuberculosis progression risk

genetic and genomic medicine more details view paper
  • Downloaded 449 times
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    • Site-wide: 68,787
    • In genetic and genomic medicine: 284
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Maximizing statistical power to detect clinically associated cell states with scPOST

bioinformatics more details view paper
  • Downloaded 408 times
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    • Site-wide: 75,818
    • In bioinformatics: 7,091
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    • Site-wide: 28,079
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    • Site-wide: 72,902

Repertoire analyses reveal TCR sequence features that influence T cell fate

immunology more details view paper
  • Downloaded 369 times
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    • Site-wide: 83,119
    • In immunology: 2,439
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Single cell analysis of RA synovial B cells reveals a dynamic spectrum of ectopic lymphoid B cell activation and hypermutation characterized by NR4A nuclear receptor expression

immunology more details view paper
  • Downloaded 293 times
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    • Site-wide: 99,448
    • In immunology: 2,933
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Trans-ethnic analysis of the human leukocyte antigen region for ulcerative colitis reveals shared but also ethnicity-specific disease associations

genetic and genomic medicine more details view paper
  • Downloaded 237 times
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Modeling memory T cell states at single-cell resolution identifies in vivo state-dependence of eQTLs influencing disease

genetics more details view paper
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A sex-specific evolutionary interaction between ADCY9 and CETP

genetics more details view paper
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