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Author: Nir Hacohen

  • ORCiD: http://orcid.org/0000-0002-2349-2656
  • Most recently observed institution: Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA; Massachusetts General Hospital Cancer Center, Harvard Medical School (HMS), Boston, MA, USA; Department of Immunology, Harvard Medical School, Boston, MA, USA

Rankings

  • All-time downloads: 71,259 (rank: 1,872 )
  • Categories:
    • bioengineering: 2,885 (rank: 583 )
    • bioinformatics: 2,299 (rank: 5,813 )
    • cancer biology: 4,324 (rank: 713 (tie) )
    • cardiovascular medicine: 111 (rank: 2,600 (tie) )
    • cell biology: 12,553 (rank: 189 (tie) )
    • genetics: 2,318 (rank: 7,746 (tie) )
    • genomics: 21,929 (rank: 464 )
    • immunology: 19,049 (rank: 416 )
    • infectious diseases: 2,681 (rank: 10,674 (tie) )
    • physiology: 306 (rank: 5,118 (tie) )
    • rheumatology: 387 (rank: 535 (tie) )
    • systems biology: 2,417 (rank: 1,618 (tie) )

Downloads per author, site-wide

Preprints

Systematic comparative analysis of single cell RNA-sequencing methods

genomics more details view paper
  • Downloaded 13,792 times
  • Download rankings, all-time:
    • Site-wide: 472
    • In genomics: 29
  • Year to date:
    • Site-wide: 1,491
  • Since beginning of last month:
    • Site-wide: 1,575

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 12,553 times
  • Download rankings, all-time:
    • Site-wide: 543
    • In cell biology: 4
  • Year to date:
    • Site-wide: 19,845
  • Since beginning of last month:
    • Site-wide: 13,214

A protocol for single-cell transcriptomics from cryopreserved renal tissue and urine for the Accelerating Medicine Partnership (AMP) RA/SLE network

immunology more details view paper
  • Downloaded 5,806 times
  • Download rankings, all-time:
    • Site-wide: 1,514
    • In immunology: 34
  • Year to date:
    • Site-wide: 3,097
  • Since beginning of last month:
    • Site-wide: 3,040

Defining Inflammatory Cell States in Rheumatoid Arthritis Joint Synovial Tissues by Integrating Single-cell Transcriptomics and Mass Cytometry

immunology more details view paper
  • Downloaded 4,292 times
  • Download rankings, all-time:
    • Site-wide: 2,298
    • In immunology: 60
  • Year to date:
    • Site-wide: 26,661
  • Since beginning of last month:
    • Site-wide: 18,248

Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer

cancer biology more details view paper
  • Downloaded 3,467 times
  • Download rankings, all-time:
    • Site-wide: 3,147
    • In cancer biology: 49
  • Year to date:
    • Site-wide: 1,996
  • Since beginning of last month:
    • Site-wide: 1,473

Temporal and Spatial Heterogeneity of Host Response to SARS-CoV-2 Pulmonary Infection

infectious diseases more details view paper
  • Downloaded 2,681 times
  • Download rankings, all-time:
    • Site-wide: 4,536
    • In infectious diseases: 740
  • Year to date:
    • Site-wide: 4,162
  • Since beginning of last month:
    • Site-wide: 4,301

Plasma proteomics reveals tissue-specific cell death and mediators of cell-cell interactions in severe COVID-19 patients

systems biology more details view paper
  • Downloaded 2,417 times
  • Download rankings, all-time:
    • Site-wide: 5,290
    • In systems biology: 92
  • Year to date:
    • Site-wide: 1,060
  • Since beginning of last month:
    • Site-wide: None

SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs

immunology more details view paper
  • Downloaded 2,349 times
  • Download rankings, all-time:
    • Site-wide: 5,518
    • In immunology: 151
  • Year to date:
    • Site-wide: 2,185
  • Since beginning of last month:
    • Site-wide: 2,831

Genome-wide maps of enhancer regulation connect risk variants to disease genes

genetics more details view paper
  • Downloaded 2,318 times
  • Download rankings, all-time:
    • Site-wide: 5,627
    • In genetics: 269
  • Year to date:
    • Site-wide: 2,771
  • Since beginning of last month:
    • Site-wide: 3,895

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

genomics more details view paper
  • Downloaded 2,169 times
  • Download rankings, all-time:
    • Site-wide: 6,165
    • In genomics: 705
  • Year to date:
    • Site-wide: 105,351
  • Since beginning of last month:
    • Site-wide: 66,860

The immune cell landscape in kidneys of lupus nephritis patients

immunology more details view paper
  • Downloaded 2,113 times
  • Download rankings, all-time:
    • Site-wide: 6,412
    • In immunology: 174
  • Year to date:
    • Site-wide: 27,678
  • Since beginning of last month:
    • Site-wide: 19,549

Landscape of X chromosome inactivation across human tissues

genomics more details view paper
  • Downloaded 2,040 times
  • Download rankings, all-time:
    • Site-wide: 6,752
    • In genomics: 768
  • Year to date:
    • Site-wide: 73,315
  • Since beginning of last month:
    • Site-wide: 51,901

Single Cell Transcriptomics And Flow Cytometry Reveal Disease-Associated Fibroblast Subsets In Rheumatoid Arthritis

immunology more details view paper
  • Downloaded 1,796 times
  • Download rankings, all-time:
    • Site-wide: 8,171
    • In immunology: 225
  • Year to date:
    • Site-wide: 50,121
  • Since beginning of last month:
    • Site-wide: 50,230

GeNets: A unified web platform for network-based analyses of genomic data

genomics more details view paper
  • Downloaded 1,675 times
  • Download rankings, all-time:
    • Site-wide: 9,130
    • In genomics: 1,031
  • Year to date:
    • Site-wide: 28,367
  • Since beginning of last month:
    • Site-wide: 14,248

Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

bioinformatics more details view paper
  • Downloaded 1,654 times
  • Download rankings, all-time:
    • Site-wide: 9,292
    • In bioinformatics: 1,141
  • Year to date:
    • Site-wide: None
  • Since beginning of last month:
    • Site-wide: None

An eQTL landscape of kidney tissue in human nephrotic syndrome

genomics more details view paper
  • Downloaded 1,290 times
  • Download rankings, all-time:
    • Site-wide: 13,400
    • In genomics: 1,456
  • Year to date:
    • Site-wide: 64,009
  • Since beginning of last month:
    • Site-wide: None

Targeting individual cells by barcode in pooled sequence libraries

bioengineering more details view paper
  • Downloaded 1,187 times
  • Download rankings, all-time:
    • Site-wide: 15,189
    • In bioengineering: 253
  • Year to date:
    • Site-wide: 122,132
  • Since beginning of last month:
    • Site-wide: None

Induction of a regulatory myeloid program in bacterial sepsis and severe COVID-19

immunology more details view paper
  • Downloaded 1,179 times
  • Download rankings, all-time:
    • Site-wide: 15,343
    • In immunology: 425
  • Year to date:
    • Site-wide: 6,300
  • Since beginning of last month:
    • Site-wide: 6,095

High dimensional analyses of cells dissociated from cryopreserved synovial tissue

immunology more details view paper
  • Downloaded 1,112 times
  • Download rankings, all-time:
    • Site-wide: 16,801
    • In immunology: 468
  • Year to date:
    • Site-wide: 52,188
  • Since beginning of last month:
    • Site-wide: 40,372

Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection

genomics more details view paper
  • Downloaded 963 times
  • Download rankings, all-time:
    • Site-wide: 20,726
    • In genomics: 2,086
  • Year to date:
    • Site-wide: 60,262
  • Since beginning of last month:
    • Site-wide: 48,715

A cell-free antibody engineering platform rapidly generates SARS-CoV-2 neutralizing antibodies

bioengineering more details view paper
  • Downloaded 915 times
  • Download rankings, all-time:
    • Site-wide: 22,329
    • In bioengineering: 367
  • Year to date:
    • Site-wide: 13,431
  • Since beginning of last month:
    • Site-wide: None

Multicellular immune hubs and their organization in MMRd and MMRp colorectal cancer

cancer biology more details view paper
  • Downloaded 857 times
  • Download rankings, all-time:
    • Site-wide: 24,559
    • In cancer biology: 617
  • Year to date:
    • Site-wide: 598
  • Since beginning of last month:
    • Site-wide: 196

Multiplexed enrichment and genomic profiling of peripheral immune cell subsets on a microfluidic chip

bioengineering more details view paper
  • Downloaded 783 times
  • Download rankings, all-time:
    • Site-wide: 27,783
    • In bioengineering: 475
  • Year to date:
    • Site-wide: 120,352
  • Since beginning of last month:
    • Site-wide: None

MAUDE: Inferring expression changes in sorting-based CRISPR screens

bioinformatics more details view paper
  • Downloaded 645 times
  • Download rankings, all-time:
    • Site-wide: 36,217
    • In bioinformatics: 4,042
  • Year to date:
    • Site-wide: 119,918
  • Since beginning of last month:
    • Site-wide: 96,594

Integration of urine proteomics and renal single-cell genomics identifies an interferon-gamma response gradient in lupus nephritis.

rheumatology more details view paper
  • Downloaded 387 times
  • Download rankings, all-time:
    • Site-wide: 65,020
    • In rheumatology: 42
  • Year to date:
    • Site-wide: 75,866
  • Since beginning of last month:
    • Site-wide: 71,266

SLAMF6 deficiency augments tumor killing and skews towards an effector phenotype revealing it as a new T cell checkpoint

physiology more details view paper
  • Downloaded 306 times
  • Download rankings, all-time:
    • Site-wide: 79,323
    • In physiology: 651
  • Year to date:
    • Site-wide: 70,404
  • Since beginning of last month:
    • Site-wide: 43,802

Alternative splicing of SLAMF6 in human T cells creates a co-stimulatory isoform that counteracts the inhibitory effect of the full-length receptor

immunology more details view paper
  • Downloaded 216 times
  • Download rankings, all-time:
    • Site-wide: 98,282
    • In immunology: 2,724
  • Year to date:
    • Site-wide: 26,154
  • Since beginning of last month:
    • Site-wide: 25,089

An efficient lentiviral CRISPRi approach to silence genes in primary human monocytes

immunology more details view paper
  • Downloaded 186 times
  • Download rankings, all-time:
    • Site-wide: 104,842
    • In immunology: 2,924
  • Year to date:
    • Site-wide: 14,520
  • Since beginning of last month:
    • Site-wide: None

Application of a 27-protein candidate cardiovascular surrogate endpoint to track risk ascendancy and resolution in COVID-19.

cardiovascular medicine more details view paper
  • Downloaded 111 times
  • Download rankings, all-time:
    • Site-wide: 119,195
    • In cardiovascular medicine: 299
  • Year to date:
    • Site-wide: 9,933
  • Since beginning of last month:
    • Site-wide: 2,680

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