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Author: Xi Chen

Rankings

  • All-time downloads: 45,956 (rank: 826 out of 393,295)
  • Categories:
    • biochemistry: 1,965 (rank: 1,008 out of 18,360)
    • bioinformatics: 11,052 (rank: 480 out of 33,499)
    • cancer biology: 4,915 (rank: 398 out of 27,296)
    • cell biology: 2,333 (rank: 1,452 (tie) out of 29,452)
    • epidemiology: 2,596 (rank: 362 out of 9,544)
    • evolutionary biology: 2,657 (rank: 1,138 (tie) out of 20,102)
    • genomics: 5,543 (rank: 3,221 out of 41,862)
    • immunology: 6,596 (rank: 399 out of 21,958)
    • microbiology: 941 (rank: 9,204 (tie) out of 44,869)
    • molecular biology: 552 (rank: 7,345 (tie) out of 20,614)
    • neuroscience: 3,260 (rank: 4,412 out of 65,842)
    • plant biology: 266 (rank: 10,557 (tie) out of 15,106)
    • synthetic biology: 2,688 (rank: 291 (tie) out of 4,094)
    • systems biology: 592 (rank: 5,360 (tie) out of 11,532)

Downloads per author, site-wide

Preprints

A rapid and robust method for single cell chromatin accessibility profiling

genomics more details view paper
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Single-cell RNA sequencing reveals a dynamic stromal niche within the evolving tumour microenvironment

cancer biology more details view paper
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    • In cancer biology: 31 out of 3,259
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    • Site-wide: 4,877 out of 92,062

Unsupervised clustering and epigenetic classification of single cells

bioinformatics more details view paper
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    • In bioinformatics: 262 out of 8,633
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    • Site-wide: 81,777 out of 92,062

Genome-wide CRISPR screens in T helper cells reveal pervasive cross-talk between activation and differentiation

immunology more details view paper
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    • In immunology: 50 out of 2,707
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Detection of complex structural variation from paired-end sequencing data

bioinformatics more details view paper
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    • In bioinformatics: 370 out of 8,633
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    • Site-wide: 8,898 out of 92,062
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Evaluating Protein Transfer Learning with TAPE

synthetic biology more details view paper
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    • In synthetic biology: 34 out of 867
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Gene expression variability across cells and species shapes innate immunity

evolutionary biology more details view paper
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    • In evolutionary biology: 85 out of 5,593
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Assessing real-time Zika risk in the United States

epidemiology more details view paper
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Structure-Based Design, Synthesis and Biological Evaluation of Peptidomimetic Aldehydes as a Novel Series of Antiviral Drug Candidates Targeting the SARS-CoV-2 Main Protease

biochemistry more details view paper
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    • In biochemistry: 122 out of 3,096
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Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells.

immunology more details view paper
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    • In immunology: 147 out of 2,707
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The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

cell biology more details view paper
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    • In cell biology: 234 out of 4,735
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    • Site-wide: 19,101 out of 92,062
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Scalable volumetric imaging for ultrahigh-speed brain mapping at synaptic resolution

neuroscience more details view paper
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    • In neuroscience: 1,126 out of 16,372
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    • Site-wide: 23,756 out of 92,062
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    • Site-wide: 18,602 out of 92,062

Mocap: Large-scale inference of transcription factor binding sites from chromatin accessibility

bioinformatics more details view paper
  • Downloaded 993 times
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    • Site-wide: 12,027 out of 92,062
    • In bioinformatics: 1,929 out of 8,633
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    • Site-wide: 80,338 out of 92,062
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    • Site-wide: 54,520 out of 92,062

Tumors induce de novo steroid biosynthesis in T cells to evade immunity

immunology more details view paper
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    • In immunology: 329 out of 2,707
  • Year to date:
    • Site-wide: 7,883 out of 92,062
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    • Site-wide: 8,255 out of 92,062

pathwayPCA: an R package for integrative pathway analysis with modern PCA methodology and gene selection

bioinformatics more details view paper
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    • Site-wide: 13,826 out of 92,062
    • In bioinformatics: 2,162 out of 8,633
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    • Site-wide: 33,849 out of 92,062

Rora regulates activated T helper cells during inflammation

immunology more details view paper
  • Downloaded 765 times
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    • In immunology: 459 out of 2,707
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Integrative analysis of single cell genomics data by coupled nonnegative matrix factorizations

bioinformatics more details view paper
  • Downloaded 653 times
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    • In bioinformatics: 3,238 out of 8,633
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    • Site-wide: 49,092 out of 92,062

12h-clock control of central dogma information flow by XBP1s

systems biology more details view paper
  • Downloaded 592 times
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    • In systems biology: 738 out of 2,358
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Rap2 and TNIK control Plexin-dependent synaptic tiling in C. elegans

neuroscience more details view paper
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    • In neuroscience: 4,526 out of 16,372
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    • Site-wide: 73,547 out of 92,062

Spatial Transcriptional Mapping of the Human Nephrogenic Program

cell biology more details view paper
  • Downloaded 564 times
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    • In cell biology: 1,287 out of 4,735
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    • Site-wide: 11,972 out of 92,062

Dual indexed design of in-Drop single-cell RNA-seq libraries improves sequencing quality and throughput

molecular biology more details view paper
  • Downloaded 552 times
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    • Site-wide: 28,538 out of 92,062
    • In molecular biology: 914 out of 3,151
  • Year to date:
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    • Site-wide: 7,876 out of 92,062

Cholecystokinin release triggered by presynaptic NMDA receptors produces LTP and sound-sound associative memory formation

neuroscience more details view paper
  • Downloaded 448 times
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    • In neuroscience: 6,352 out of 16,372
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    • Site-wide: 77,110 out of 92,062

The effects of modified sialic acids on mucus and erythrocytes on influenza A virus HA and NA functions

microbiology more details view paper
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    • In microbiology: 2,562 out of 8,002
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    • Site-wide: 16,298 out of 92,062

Knowledge-guided analysis of 'omics' data using the KnowEnG cloud platform

cancer biology more details view paper
  • Downloaded 416 times
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    • In cancer biology: 1,284 out of 3,259
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coMethDMR: Accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies

bioinformatics more details view paper
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    • Site-wide: 19,534 out of 92,062

Quantitative Real-Time Imaging of Glutathione with Sub-Cellular Resolution

cell biology more details view paper
  • Downloaded 404 times
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    • In cell biology: 2,043 out of 4,735
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Disentangling the contribution of childhood and adulthood circumstances and genetics to phenotypic aging: prospective cohort study

epidemiology more details view paper
  • Downloaded 350 times
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    • Site-wide: 89,957 out of 92,062

Growth Factor Independent 1 is a tumor suppressor gene in colorectal cancer

cancer biology more details view paper
  • Downloaded 347 times
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    • In cancer biology: 1,536 out of 3,259
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    • Site-wide: 63,208 out of 92,062

Unconsciously Implanted Visuoauditory Memory in the Presence of Cholecystokinin Retrieved in Behavioral Contexts

neuroscience more details view paper
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    • In neuroscience: 8,533 out of 16,372
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    • Site-wide: 17,494 out of 92,062

Reprogramming the endogenous type III-A CRISPR-Cas system for genome editing, RNA interference and CRISPRi screening in Mycobacterium tuberculosis

microbiology more details view paper
  • Downloaded 342 times
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    • In microbiology: 3,575 out of 8,002
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    • Site-wide: 18,759 out of 92,062

MassComp, a lossless compressor for mass spectrometry data

bioinformatics more details view paper
  • Downloaded 318 times
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    • Site-wide: 52,198 out of 92,062
    • In bioinformatics: 5,888 out of 8,633
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    • Site-wide: 71,471 out of 92,062

Dopaminergic Neurodegeneration Induced by Parkinson's Disease-Linked G2019S LRRK2 is Dependent on Kinase and GTPase Activity

neuroscience more details view paper
  • Downloaded 289 times
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    • In neuroscience: 9,963 out of 16,372
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    • Site-wide: 17,953 out of 92,062

Alternative splicing and translation play important roles in parallel with transcriptional regulation during rice hypoxic germination

plant biology more details view paper
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    • In plant biology: 1,789 out of 2,829
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ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach

bioinformatics more details view paper
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    • In bioinformatics: 6,565 out of 8,633
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Selectivity and engineering of the sialoglycan-binding spectrum in Siglec-like adhesins

biochemistry more details view paper
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KAT7 is a therapeutic vulnerability of MLL-rearranged acute myeloid leukemia

cancer biology more details view paper
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Bayesian inference of differentially expressed transcripts and their abundance from multi-condition RNA-seq data

bioinformatics more details view paper
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    • In bioinformatics: 7,184 out of 8,633
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MSIGNET: a Metropolis sampling-based method for global optimal significant network identification

bioinformatics more details view paper
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    • In bioinformatics: 7,319 out of 8,633
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BICORN: An R package for integrative inference of de novo cis-regulatory modules

bioinformatics more details view paper
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    • In bioinformatics: 7,314 out of 8,633
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    • Site-wide: 71,900 out of 92,062

GIP: A Gene network-based integrative approach for Inferring disease-associated signaling Pathways

bioinformatics more details view paper
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    • Site-wide: 87,740 out of 92,062

Impact of Prior Cancer on Outcomes in Nasopharyngeal Carcinoma

epidemiology more details view paper
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    • In epidemiology: 1,376 out of 1,556
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Retrieval Practice Facilitates Judgments of Learning Through Multiple Mechanisms

neuroscience more details view paper
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Cellular heterogeneity-adjusted clonal methylation (CHALM) provides better prediction of gene expression

bioinformatics more details view paper
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ChIP-GSM: cell type-specific cis-regulatory module inference for active regulatory element prediction

bioinformatics more details view paper
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    • Site-wide: 87,574 out of 92,062

Lipidomic and Ultrastructural Characterization of Cell Envelope of Staphylococcus aureus Grown in the Presence of Human Serum

microbiology more details view paper
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    • Site-wide: 75,463 out of 92,062

stLFRsv: a germline SV analysis pipeline using co-barcoded reads

bioinformatics more details view paper
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    • In bioinformatics: 8,029 out of 8,633
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    • Site-wide: 12,632 out of 92,062

Neuron-glia Integrity: Functional Assessment, Molecular Underpinnings, and Implication for Higher Brain Functions

neuroscience more details view paper
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    • In neuroscience: 15,263 out of 16,372
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    • Site-wide: 87,095 out of 92,062

Acidosis, Zinc and HMGB1 in Sepsis: A Common Connection Involving Sialoglycan Recognition

immunology more details view paper
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