Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,789 bioRxiv papers from 265,997 authors.

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Preprints

A rapid and robust method for single cell chromatin accessibility profiling

• Downloaded 5,020 times
• Download rankings, all-time:
  • Site-wide: 367 out of 57,789
  • In genomics: 97 out of 4,057
• Year to date:
  • Site-wide: 461 out of 57,789
• Since beginning of last month:
  • Site-wide: 2,671 out of 57,789

Unsupervised clustering and epigenetic classification of single cells

• Downloaded 3,283 times
• Download rankings, all-time:
  • Site-wide: 848 out of 57,789
  • In bioinformatics: 168 out of 5,897
• Year to date:
  • Site-wide: 20,967 out of 57,789
• Since beginning of last month:
  • Site-wide: 33,560 out of 57,789

Genome-wide CRISPR screens in T helper cells reveal pervasive cross-talk between activation and differentiation

• Downloaded 2,967 times
• Download rankings, all-time:
  • Site-wide: 1,008 out of 57,789
  • In immunology: 13 out of 1,387
• Year to date:
  • Site-wide: 3,007 out of 57,789
• Since beginning of last month:
  • Site-wide: 9,757 out of 57,789

Gene expression variability across cells and species shapes innate immunity

• Downloaded 2,415 times
• Download rankings, all-time:
  • Site-wide: 1,484 out of 57,789
  • In evolutionary biology: 64 out of 3,967
• Year to date:
  • Site-wide: 10,935 out of 57,789
• Since beginning of last month:
  • Site-wide: 14,950 out of 57,789

Detection of complex structural variation from paired-end sequencing data

• Downloaded 2,280 times
• Download rankings, all-time:
  • Site-wide: 1,641 out of 57,789
  • In bioinformatics: 330 out of 5,897
• Year to date:
  • Site-wide: 2,608 out of 57,789
• Since beginning of last month:
  • Site-wide: 3,088 out of 57,789

Single-cell RNA sequencing reveals a dynamic stromal niche within the evolving tumour microenvironment

• Downloaded 2,157 times
• Download rankings, all-time:
  • Site-wide: 1,795 out of 57,789
  • In cancer biology: 44 out of 1,870
• Year to date:
  • Site-wide: 573 out of 57,789
• Since beginning of last month:
  • Site-wide: 613 out of 57,789

Assessing real-time Zika risk in the United States

• Downloaded 1,811 times
• Download rankings, all-time:
  • Site-wide: 2,427 out of 57,789
  • In epidemiology: 23 out of 1,556
• Year to date:
  • Site-wide: 13,936 out of 57,789
• Since beginning of last month:
  • Site-wide: 13,062 out of 57,789

The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

• Downloaded 1,028 times
• Download rankings, all-time:
  • Site-wide: 6,239 out of 57,789
  • In cell biology: 191 out of 2,743
• Year to date:
  • Site-wide: 7,458 out of 57,789
• Since beginning of last month:
  • Site-wide: 9,001 out of 57,789

Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells.

• Downloaded 1,016 times
• Download rankings, all-time:
  • Site-wide: 6,365 out of 57,789
  • In immunology: 81 out of 1,387
• Year to date:
  • Site-wide: 1,071 out of 57,789
• Since beginning of last month:
  • Site-wide: 1,122 out of 57,789

Scalable volumetric imaging for ultrahigh-speed brain mapping at synaptic resolution

• Downloaded 932 times
• Download rankings, all-time:
  • Site-wide: 7,288 out of 57,789
  • In neuroscience: 1,115 out of 10,199
• Year to date:
  • Site-wide: 9,654 out of 57,789
• Since beginning of last month:
  • Site-wide: 12,351 out of 57,789

Mocap: Large-scale inference of transcription factor binding sites from chromatin accessibility

• Downloaded 925 times
• Download rankings, all-time:
  • Site-wide: 7,385 out of 57,789
  • In bioinformatics: 1,328 out of 5,897
• Year to date:
  • Site-wide: 47,121 out of 57,789
• Since beginning of last month:
  • Site-wide: 42,308 out of 57,789

pathwayPCA: an R package for integrative pathway analysis with modern PCA methodology and gene selection

• Downloaded 582 times
• Download rankings, all-time:
  • Site-wide: 14,470 out of 57,789
  • In bioinformatics: 2,318 out of 5,897
• Year to date:
  • Site-wide: 2,831 out of 57,789
• Since beginning of last month:
  • Site-wide: 9,749 out of 57,789

Integrative analysis of single cell genomics data by coupled nonnegative matrix factorizations

• Downloaded 532 times
• Download rankings, all-time:
  • Site-wide: 16,252 out of 57,789
  • In bioinformatics: 2,525 out of 5,897
• Year to date:
  • Site-wide: 27,665 out of 57,789
• Since beginning of last month:
  • Site-wide: 23,231 out of 57,789

Rap2 and TNIK control Plexin-dependent synaptic tiling in C. elegans

• Downloaded 497 times
• Download rankings, all-time:
  • Site-wide: 17,759 out of 57,789
  • In neuroscience: 2,918 out of 10,199
• Year to date:
  • Site-wide: 43,686 out of 57,789
• Since beginning of last month:
  • Site-wide: 31,872 out of 57,789

Evaluating Protein Transfer Learning with TAPE

• Downloaded 389 times
• Download rankings, all-time:
  • Site-wide: 23,385 out of 57,789
  • In synthetic biology: 357 out of 555
• Year to date:
  • Site-wide: 5,510 out of 57,789
• Since beginning of last month:
  • Site-wide: 1,601 out of 57,789

Rora regulates activated T helper cells during inflammation

• Downloaded 352 times
• Download rankings, all-time:
  • Site-wide: 25,905 out of 57,789
  • In immunology: 474 out of 1,387
• Year to date:
  • Site-wide: 6,518 out of 57,789
• Since beginning of last month:
  • Site-wide: 484 out of 57,789

Cholecystokinin release triggered by presynaptic NMDA receptors produces LTP and sound-sound associative memory formation

• Downloaded 329 times
• Download rankings, all-time:
  • Site-wide: 27,567 out of 57,789
  • In neuroscience: 4,653 out of 10,199
• Year to date:
  • Site-wide: 27,554 out of 57,789
• Since beginning of last month:
  • Site-wide: 37,394 out of 57,789

12h-clock control of central dogma information flow by XBP1s

• Downloaded 294 times
• Download rankings, all-time:
  • Site-wide: 30,510 out of 57,789
  • In systems biology: 961 out of 1,638
• Year to date:
  • Site-wide: 8,692 out of 57,789
• Since beginning of last month:
  • Site-wide: 15,692 out of 57,789

Quantitative Real-Time Imaging of Glutathione with Sub-Cellular Resolution

• Downloaded 268 times
• Download rankings, all-time:
  • Site-wide: 32,940 out of 57,789
  • In cell biology: 1,554 out of 2,743
• Year to date:
  • Site-wide: 26,672 out of 57,789
• Since beginning of last month:
  • Site-wide: 23,048 out of 57,789

coMethDMR: Accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies

• Downloaded 255 times
• Download rankings, all-time:
  • Site-wide: 34,252 out of 57,789
  • In bioinformatics: 4,257 out of 5,897
• Year to date:
  • Site-wide: 10,884 out of 57,789
• Since beginning of last month:
  • Site-wide: 13,286 out of 57,789

Disentangling the contribution of childhood and adulthood circumstances and genetics to phenotypic aging: prospective cohort study

• Downloaded 249 times
• Download rankings, all-time:
  • Site-wide: 34,919 out of 57,789
  • In epidemiology: 596 out of 1,556
• Year to date:
  • Site-wide: 31,296 out of 57,789
• Since beginning of last month:
  • Site-wide: 25,046 out of 57,789

Knowledge-guided analysis of 'omics' data using the KnowEnG cloud platform

• Downloaded 242 times
• Download rankings, all-time:
  • Site-wide: 35,571 out of 57,789
  • In cancer biology: 1,098 out of 1,870
• Year to date:
  • Site-wide: 11,736 out of 57,789
• Since beginning of last month:
  • Site-wide: 10,800 out of 57,789

Unconsciously Implanted Visuoauditory Memory in the Presence of Cholecystokinin Retrieved in Behavioral Contexts

• Downloaded 218 times
• Download rankings, all-time:
  • Site-wide: 38,146 out of 57,789
  • In neuroscience: 6,591 out of 10,199
• Year to date:
  • Site-wide: 42,489 out of 57,789
• Since beginning of last month:
  • Site-wide: 54,097 out of 57,789

Growth Factor Independent 1 is a tumor suppressor gene in colorectal cancer

• Downloaded 217 times
• Download rankings, all-time:
  • Site-wide: 38,282 out of 57,789
  • In cancer biology: 1,191 out of 1,870
• Year to date:
  • Site-wide: 23,937 out of 57,789
• Since beginning of last month:
  • Site-wide: 17,671 out of 57,789

MassComp, a lossless compressor for mass spectrometry data

• Downloaded 211 times
• Download rankings, all-time:
  • Site-wide: 38,994 out of 57,789
  • In bioinformatics: 4,624 out of 5,897
• Year to date:
  • Site-wide: 14,210 out of 57,789
• Since beginning of last month:
  • Site-wide: 43,804 out of 57,789

ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach

• Downloaded 211 times
• Download rankings, all-time:
  • Site-wide: 38,952 out of 57,789
  • In bioinformatics: 4,626 out of 5,897
• Year to date:
  • Site-wide: 50,340 out of 57,789
• Since beginning of last month:
  • Site-wide: 52,544 out of 57,789

Alternative splicing and translation play important roles in parallel with transcriptional regulation during rice hypoxic germination

• Downloaded 186 times
• Download rankings, all-time:
  • Site-wide: 41,881 out of 57,789
  • In plant biology: 1,180 out of 1,599
• Year to date:
  • Site-wide: 35,345 out of 57,789
• Since beginning of last month:
  • Site-wide: 38,627 out of 57,789

Bayesian inference of differentially expressed transcripts and their abundance from multi-condition RNA-seq data

• Downloaded 136 times
• Download rankings, all-time:
  • Site-wide: 48,202 out of 57,789
  • In bioinformatics: 5,319 out of 5,897
• Year to date:
  • Site-wide: 24,233 out of 57,789
• Since beginning of last month:
  • Site-wide: 45,069 out of 57,789

MSIGNET: a Metropolis sampling-based method for global optimal significant network identification

• Downloaded 133 times
• Download rankings, all-time:
  • Site-wide: 48,486 out of 57,789
  • In bioinformatics: 5,333 out of 5,897
• Year to date:
  • Site-wide: 55,568 out of 57,789
• Since beginning of last month:
  • Site-wide: 56,255 out of 57,789

BICORN: An R package for integrative inference of de novo cis-regulatory modules

• Downloaded 118 times
• Download rankings, all-time:
  • Site-wide: 50,463 out of 57,789
  • In bioinformatics: 5,462 out of 5,897
• Year to date:
  • Site-wide: 28,174 out of 57,789
• Since beginning of last month:
  • Site-wide: 51,683 out of 57,789

Impact of Prior Cancer on Outcomes in Nasopharyngeal Carcinoma

• Downloaded 107 times
• Download rankings, all-time:
  • Site-wide: 51,707 out of 57,789
  • In epidemiology: 1,240 out of 1,556
• Year to date:
  • Site-wide: 30,646 out of 57,789
• Since beginning of last month:
  • Site-wide: 53,485 out of 57,789

ChIP-GSM: cell type-specific cis-regulatory module inference for active regulatory element prediction

• Downloaded 97 times
• Download rankings, all-time:
  • Site-wide: 52,839 out of 57,789
  • In bioinformatics: 5,604 out of 5,897
• Year to date:
  • Site-wide: 33,380 out of 57,789
• Since beginning of last month:
  • Site-wide: 53,552 out of 57,789

Retrieval Practice Facilitates Judgments of Learning Through Multiple Mechanisms

• Downloaded 97 times
• Download rankings, all-time:
  • Site-wide: 52,790 out of 57,789
  • In neuroscience: 9,275 out of 10,199
• Year to date:
  • Site-wide: 33,400 out of 57,789
• Since beginning of last month:
  • Site-wide: 55,565 out of 57,789

GIP: A Gene network-based integrative approach for Inferring disease-associated signaling Pathways

• Downloaded 96 times
• Download rankings, all-time:
  • Site-wide: 52,864 out of 57,789
  • In bioinformatics: 5,615 out of 5,897
• Year to date:
  • Site-wide: 33,801 out of 57,789
• Since beginning of last month:
  • Site-wide: 41,854 out of 57,789