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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,235 bioRxiv papers from 306,680 authors.

Author: Xi Chen

Rankings

  • All-time downloads: 34,645 (rank: 537 out of 306,655)
  • Categories:
    • biochemistry: 109 (rank: 11,473 (tie) out of 12,353)
    • bioinformatics: 9,613 (rank: 365 out of 26,739)
    • cancer biology: 3,503 (rank: 437 (tie) out of 19,865)
    • cell biology: 1,496 (rank: 1,771 (tie) out of 21,165)
    • epidemiology: 2,347 (rank: 342 out of 9,539)
    • evolutionary biology: 2,517 (rank: 853 (tie) out of 16,504)
    • genomics: 5,276 (rank: 2,638 out of 34,697)
    • immunology: 4,903 (rank: 128 out of 14,634)
    • microbiology: 176 (rank: 23,949 (tie) out of 31,654)
    • molecular biology: 309 (rank: 8,156 (tie) out of 14,954)
    • neuroscience: 2,605 (rank: 3,933 (tie) out of 51,767)
    • plant biology: 219 (rank: 8,328 (tie) out of 11,184)
    • synthetic biology: 1,173 (rank: 730 (tie) out of 3,070)
    • systems biology: 399 (rank: 5,244 (tie) out of 9,233)

Downloads per author, site-wide

Preprints

A rapid and robust method for single cell chromatin accessibility profiling

genomics more details view paper
  • Downloaded 5,276 times
  • Download rankings, all-time:
    • Site-wide: 416 out of 70,235
    • In genomics: 109 out of 4,700
  • Year to date:
    • Site-wide: 19,113 out of 70,235
  • Since beginning of last month:
    • Site-wide: 6,474 out of 70,235

Unsupervised clustering and epigenetic classification of single cells

bioinformatics more details view paper
  • Downloaded 3,337 times
  • Download rankings, all-time:
    • Site-wide: 1,006 out of 70,235
    • In bioinformatics: 197 out of 6,887
  • Year to date:
    • Site-wide: 28,187 out of 70,235
  • Since beginning of last month:
    • Site-wide: 33,368 out of 70,235

Genome-wide CRISPR screens in T helper cells reveal pervasive cross-talk between activation and differentiation

immunology more details view paper
  • Downloaded 3,090 times
  • Download rankings, all-time:
    • Site-wide: 1,180 out of 70,235
    • In immunology: 16 out of 1,805
  • Year to date:
    • Site-wide: 35,848 out of 70,235
  • Since beginning of last month:
    • Site-wide: 21,347 out of 70,235

Single-cell RNA sequencing reveals a dynamic stromal niche within the evolving tumour microenvironment

cancer biology more details view paper
  • Downloaded 2,886 times
  • Download rankings, all-time:
    • Site-wide: 1,338 out of 70,235
    • In cancer biology: 37 out of 2,389
  • Year to date:
    • Site-wide: 3,585 out of 70,235
  • Since beginning of last month:
    • Site-wide: 1,677 out of 70,235

Detection of complex structural variation from paired-end sequencing data

bioinformatics more details view paper
  • Downloaded 2,542 times
  • Download rankings, all-time:
    • Site-wide: 1,659 out of 70,235
    • In bioinformatics: 331 out of 6,887
  • Year to date:
    • Site-wide: 7,012 out of 70,235
  • Since beginning of last month:
    • Site-wide: 10,850 out of 70,235

Gene expression variability across cells and species shapes innate immunity

evolutionary biology more details view paper
  • Downloaded 2,517 times
  • Download rankings, all-time:
    • Site-wide: 1,698 out of 70,235
    • In evolutionary biology: 72 out of 4,612
  • Year to date:
    • Site-wide: 16,785 out of 70,235
  • Since beginning of last month:
    • Site-wide: 17,481 out of 70,235

Assessing real-time Zika risk in the United States

epidemiology more details view paper
  • Downloaded 1,914 times
  • Download rankings, all-time:
    • Site-wide: 2,740 out of 70,235
    • In epidemiology: 26 out of 1,556
  • Year to date:
    • Site-wide: 14,343 out of 70,235
  • Since beginning of last month:
    • Site-wide: 11,219 out of 70,235

Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells.

immunology more details view paper
  • Downloaded 1,311 times
  • Download rankings, all-time:
    • Site-wide: 5,222 out of 70,235
    • In immunology: 79 out of 1,805
  • Year to date:
    • Site-wide: 37,106 out of 70,235
  • Since beginning of last month:
    • Site-wide: 4,572 out of 70,235

Scalable volumetric imaging for ultrahigh-speed brain mapping at synaptic resolution

neuroscience more details view paper
  • Downloaded 1,183 times
  • Download rankings, all-time:
    • Site-wide: 6,206 out of 70,235
    • In neuroscience: 976 out of 12,633
  • Year to date:
    • Site-wide: 4,708 out of 70,235
  • Since beginning of last month:
    • Site-wide: 8,506 out of 70,235

Evaluating Protein Transfer Learning with TAPE

synthetic biology more details view paper
  • Downloaded 1,173 times
  • Download rankings, all-time:
    • Site-wide: 6,306 out of 70,235
    • In synthetic biology: 96 out of 666
  • Year to date:
    • Site-wide: 1,692 out of 70,235
  • Since beginning of last month:
    • Site-wide: 741 out of 70,235

The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

cell biology more details view paper
  • Downloaded 1,172 times
  • Download rankings, all-time:
    • Site-wide: 6,310 out of 70,235
    • In cell biology: 195 out of 3,429
  • Year to date:
    • Site-wide: 34,740 out of 70,235
  • Since beginning of last month:
    • Site-wide: 13,987 out of 70,235

Mocap: Large-scale inference of transcription factor binding sites from chromatin accessibility

bioinformatics more details view paper
  • Downloaded 947 times
  • Download rankings, all-time:
    • Site-wide: 8,966 out of 70,235
    • In bioinformatics: 1,553 out of 6,887
  • Year to date:
    • Site-wide: 41,530 out of 70,235
  • Since beginning of last month:
    • Site-wide: 67,794 out of 70,235

pathwayPCA: an R package for integrative pathway analysis with modern PCA methodology and gene selection

bioinformatics more details view paper
  • Downloaded 707 times
  • Download rankings, all-time:
    • Site-wide: 13,962 out of 70,235
    • In bioinformatics: 2,252 out of 6,887
  • Year to date:
    • Site-wide: 22,403 out of 70,235
  • Since beginning of last month:
    • Site-wide: 19,691 out of 70,235

Integrative analysis of single cell genomics data by coupled nonnegative matrix factorizations

bioinformatics more details view paper
  • Downloaded 576 times
  • Download rankings, all-time:
    • Site-wide: 18,654 out of 70,235
    • In bioinformatics: 2,793 out of 6,887
  • Year to date:
    • Site-wide: 66,438 out of 70,235
  • Since beginning of last month:
    • Site-wide: 42,376 out of 70,235

Rap2 and TNIK control Plexin-dependent synaptic tiling in C. elegans

neuroscience more details view paper
  • Downloaded 530 times
  • Download rankings, all-time:
    • Site-wide: 20,802 out of 70,235
    • In neuroscience: 3,517 out of 12,633
  • Year to date:
    • Site-wide: 25,738 out of 70,235
  • Since beginning of last month:
    • Site-wide: 43,678 out of 70,235

Rora regulates activated T helper cells during inflammation

immunology more details view paper
  • Downloaded 502 times
  • Download rankings, all-time:
    • Site-wide: 22,260 out of 70,235
    • In immunology: 424 out of 1,805
  • Year to date:
    • Site-wide: 21,232 out of 70,235
  • Since beginning of last month:
    • Site-wide: 21,678 out of 70,235

12h-clock control of central dogma information flow by XBP1s

systems biology more details view paper
  • Downloaded 399 times
  • Download rankings, all-time:
    • Site-wide: 29,054 out of 70,235
    • In systems biology: 872 out of 1,936
  • Year to date:
    • Site-wide: 19,016 out of 70,235
  • Since beginning of last month:
    • Site-wide: 9,138 out of 70,235

Cholecystokinin release triggered by presynaptic NMDA receptors produces LTP and sound-sound associative memory formation

neuroscience more details view paper
  • Downloaded 385 times
  • Download rankings, all-time:
    • Site-wide: 30,293 out of 70,235
    • In neuroscience: 5,232 out of 12,633
  • Year to date:
    • Site-wide: 41,855 out of 70,235
  • Since beginning of last month:
    • Site-wide: 61,559 out of 70,235

Knowledge-guided analysis of 'omics' data using the KnowEnG cloud platform

cancer biology more details view paper
  • Downloaded 337 times
  • Download rankings, all-time:
    • Site-wide: 34,711 out of 70,235
    • In cancer biology: 1,087 out of 2,389
  • Year to date:
    • Site-wide: 44,375 out of 70,235
  • Since beginning of last month:
    • Site-wide: 27,395 out of 70,235

Quantitative Real-Time Imaging of Glutathione with Sub-Cellular Resolution

cell biology more details view paper
  • Downloaded 324 times
  • Download rankings, all-time:
    • Site-wide: 35,974 out of 70,235
    • In cell biology: 1,724 out of 3,429
  • Year to date:
    • Site-wide: 22,841 out of 70,235
  • Since beginning of last month:
    • Site-wide: 41,549 out of 70,235

Dual indexed design of in-Drop single-cell RNA-seq libraries improves sequencing quality and throughput

molecular biology more details view paper
  • Downloaded 309 times
  • Download rankings, all-time:
    • Site-wide: 37,477 out of 70,235
    • In molecular biology: 1,117 out of 2,260
  • Year to date:
    • Site-wide: 4,123 out of 70,235
  • Since beginning of last month:
    • Site-wide: 12,659 out of 70,235

coMethDMR: Accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies

bioinformatics more details view paper
  • Downloaded 301 times
  • Download rankings, all-time:
    • Site-wide: 38,314 out of 70,235
    • In bioinformatics: 4,660 out of 6,887
  • Year to date:
    • Site-wide: 55,442 out of 70,235
  • Since beginning of last month:
    • Site-wide: 47,741 out of 70,235

Disentangling the contribution of childhood and adulthood circumstances and genetics to phenotypic aging: prospective cohort study

epidemiology more details view paper
  • Downloaded 293 times
  • Download rankings, all-time:
    • Site-wide: 39,151 out of 70,235
    • In epidemiology: 654 out of 1,556
  • Year to date:
    • Site-wide: 47,957 out of 70,235
  • Since beginning of last month:
    • Site-wide: 62,026 out of 70,235

Growth Factor Independent 1 is a tumor suppressor gene in colorectal cancer

cancer biology more details view paper
  • Downloaded 280 times
  • Download rankings, all-time:
    • Site-wide: 40,745 out of 70,235
    • In cancer biology: 1,278 out of 2,389
  • Year to date:
    • Site-wide: 19,317 out of 70,235
  • Since beginning of last month:
    • Site-wide: 10,787 out of 70,235

Unconsciously Implanted Visuoauditory Memory in the Presence of Cholecystokinin Retrieved in Behavioral Contexts

neuroscience more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 43,908 out of 70,235
    • In neuroscience: 7,743 out of 12,633
  • Year to date:
    • Site-wide: 20,205 out of 70,235
  • Since beginning of last month:
    • Site-wide: 66,404 out of 70,235

MassComp, a lossless compressor for mass spectrometry data

bioinformatics more details view paper
  • Downloaded 251 times
  • Download rankings, all-time:
    • Site-wide: 44,193 out of 70,235
    • In bioinformatics: 5,124 out of 6,887
  • Year to date:
    • Site-wide: 64,257 out of 70,235
  • Since beginning of last month:
    • Site-wide: 36,917 out of 70,235

ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach

bioinformatics more details view paper
  • Downloaded 221 times
  • Download rankings, all-time:
    • Site-wide: 48,244 out of 70,235
    • In bioinformatics: 5,415 out of 6,887
  • Year to date:
    • Site-wide: None out of 70,235
  • Since beginning of last month:
    • Site-wide: 65,603 out of 70,235

Alternative splicing and translation play important roles in parallel with transcriptional regulation during rice hypoxic germination

plant biology more details view paper
  • Downloaded 219 times
  • Download rankings, all-time:
    • Site-wide: 48,549 out of 70,235
    • In plant biology: 1,401 out of 2,062
  • Year to date:
    • Site-wide: 38,686 out of 70,235
  • Since beginning of last month:
    • Site-wide: 62,189 out of 70,235

The effects of modified sialic acids on mucus and erythrocytes on influenza A virus HA and NA functions

microbiology more details view paper
  • Downloaded 176 times
  • Download rankings, all-time:
    • Site-wide: 54,709 out of 70,235
    • In microbiology: 4,015 out of 5,693
  • Year to date:
    • Site-wide: 7,531 out of 70,235
  • Since beginning of last month:
    • Site-wide: 16,766 out of 70,235

Bayesian inference of differentially expressed transcripts and their abundance from multi-condition RNA-seq data

bioinformatics more details view paper
  • Downloaded 167 times
  • Download rankings, all-time:
    • Site-wide: 56,050 out of 70,235
    • In bioinformatics: 6,007 out of 6,887
  • Year to date:
    • Site-wide: 51,385 out of 70,235
  • Since beginning of last month:
    • Site-wide: 53,596 out of 70,235

MSIGNET: a Metropolis sampling-based method for global optimal significant network identification

bioinformatics more details view paper
  • Downloaded 161 times
  • Download rankings, all-time:
    • Site-wide: 57,009 out of 70,235
    • In bioinformatics: 6,069 out of 6,887
  • Year to date:
    • Site-wide: 60,420 out of 70,235
  • Since beginning of last month:
    • Site-wide: 37,465 out of 70,235

BICORN: An R package for integrative inference of de novo cis-regulatory modules

bioinformatics more details view paper
  • Downloaded 147 times
  • Download rankings, all-time:
    • Site-wide: 59,113 out of 70,235
    • In bioinformatics: 6,202 out of 6,887
  • Year to date:
    • Site-wide: 55,268 out of 70,235
  • Since beginning of last month:
    • Site-wide: 53,975 out of 70,235

Impact of Prior Cancer on Outcomes in Nasopharyngeal Carcinoma

epidemiology more details view paper
  • Downloaded 140 times
  • Download rankings, all-time:
    • Site-wide: 60,218 out of 70,235
    • In epidemiology: 1,296 out of 1,556
  • Year to date:
    • Site-wide: 52,240 out of 70,235
  • Since beginning of last month:
    • Site-wide: 57,170 out of 70,235

GIP: A Gene network-based integrative approach for Inferring disease-associated signaling Pathways

bioinformatics more details view paper
  • Downloaded 131 times
  • Download rankings, all-time:
    • Site-wide: 61,438 out of 70,235
    • In bioinformatics: 6,368 out of 6,887
  • Year to date:
    • Site-wide: 51,381 out of 70,235
  • Since beginning of last month:
    • Site-wide: 54,710 out of 70,235

Dopaminergic Neurodegeneration Induced by Parkinson's Disease-Linked G2019S LRRK2 is Dependent on Kinase and GTPase Activity

neuroscience more details view paper
  • Downloaded 127 times
  • Download rankings, all-time:
    • Site-wide: 62,019 out of 70,235
    • In neuroscience: 11,113 out of 12,633
  • Year to date:
    • Site-wide: 4,080 out of 70,235
  • Since beginning of last month:
    • Site-wide: 2,180 out of 70,235

Retrieval Practice Facilitates Judgments of Learning Through Multiple Mechanisms

neuroscience more details view paper
  • Downloaded 126 times
  • Download rankings, all-time:
    • Site-wide: 62,171 out of 70,235
    • In neuroscience: 11,124 out of 12,633
  • Year to date:
    • Site-wide: 42,106 out of 70,235
  • Since beginning of last month:
    • Site-wide: 57,222 out of 70,235

ChIP-GSM: cell type-specific cis-regulatory module inference for active regulatory element prediction

bioinformatics more details view paper
  • Downloaded 125 times
  • Download rankings, all-time:
    • Site-wide: 62,272 out of 70,235
    • In bioinformatics: 6,403 out of 6,887
  • Year to date:
    • Site-wide: 57,943 out of 70,235
  • Since beginning of last month:
    • Site-wide: 59,742 out of 70,235

Selectivity and engineering of the sialoglycan-binding spectrum in Siglec-like adhesins

biochemistry more details view paper
  • Downloaded 109 times
  • Download rankings, all-time:
    • Site-wide: 64,377 out of 70,235
    • In biochemistry: 1,889 out of 2,105
  • Year to date:
    • Site-wide: 29,984 out of 70,235
  • Since beginning of last month:
    • Site-wide: 60,953 out of 70,235

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