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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,789 bioRxiv papers from 265,997 authors.

Author: Xi Chen

Rankings

  • All-time downloads: 29,650 (rank: 555 out of 265,997)
  • Categories:
    • bioinformatics: 8,859 (rank: 328 out of 23,176)
    • cancer biology: 2,616 (rank: 551 out of 15,416)
    • cell biology: 1,296 (rank: 1,436 (tie) out of 16,921)
    • epidemiology: 2,167 (rank: 292 out of 9,583)
    • evolutionary biology: 2,415 (rank: 689 (tie) out of 14,436)
    • genomics: 5,020 (rank: 2,360 out of 30,344)
    • immunology: 4,335 (rank: 114 out of 11,281)
    • neuroscience: 2,073 (rank: 3,705 (tie) out of 41,595)
    • plant biology: 186 (rank: 6,970 (tie) out of 8,976)
    • synthetic biology: 389 (rank: 1,680 (tie) out of 2,524)
    • systems biology: 294 (rank: 5,200 (tie) out of 7,854)

Downloads per author, site-wide

Preprints

A rapid and robust method for single cell chromatin accessibility profiling

genomics more details view paper
  • Downloaded 5,020 times
  • Download rankings, all-time:
    • Site-wide: 367 out of 57,789
    • In genomics: 97 out of 4,057
  • Year to date:
    • Site-wide: 461 out of 57,789
  • Since beginning of last month:
    • Site-wide: 2,671 out of 57,789

Unsupervised clustering and epigenetic classification of single cells

bioinformatics more details view paper
  • Downloaded 3,283 times
  • Download rankings, all-time:
    • Site-wide: 848 out of 57,789
    • In bioinformatics: 168 out of 5,897
  • Year to date:
    • Site-wide: 20,967 out of 57,789
  • Since beginning of last month:
    • Site-wide: 33,560 out of 57,789

Genome-wide CRISPR screens in T helper cells reveal pervasive cross-talk between activation and differentiation

immunology more details view paper
  • Downloaded 2,967 times
  • Download rankings, all-time:
    • Site-wide: 1,008 out of 57,789
    • In immunology: 13 out of 1,387
  • Year to date:
    • Site-wide: 3,007 out of 57,789
  • Since beginning of last month:
    • Site-wide: 9,757 out of 57,789

Gene expression variability across cells and species shapes innate immunity

evolutionary biology more details view paper
  • Downloaded 2,415 times
  • Download rankings, all-time:
    • Site-wide: 1,484 out of 57,789
    • In evolutionary biology: 64 out of 3,967
  • Year to date:
    • Site-wide: 10,935 out of 57,789
  • Since beginning of last month:
    • Site-wide: 14,950 out of 57,789

Detection of complex structural variation from paired-end sequencing data

bioinformatics more details view paper
  • Downloaded 2,280 times
  • Download rankings, all-time:
    • Site-wide: 1,641 out of 57,789
    • In bioinformatics: 330 out of 5,897
  • Year to date:
    • Site-wide: 2,608 out of 57,789
  • Since beginning of last month:
    • Site-wide: 3,088 out of 57,789

Single-cell RNA sequencing reveals a dynamic stromal niche within the evolving tumour microenvironment

cancer biology more details view paper
  • Downloaded 2,157 times
  • Download rankings, all-time:
    • Site-wide: 1,795 out of 57,789
    • In cancer biology: 44 out of 1,870
  • Year to date:
    • Site-wide: 573 out of 57,789
  • Since beginning of last month:
    • Site-wide: 613 out of 57,789

Assessing real-time Zika risk in the United States

epidemiology more details view paper
  • Downloaded 1,811 times
  • Download rankings, all-time:
    • Site-wide: 2,427 out of 57,789
    • In epidemiology: 23 out of 1,556
  • Year to date:
    • Site-wide: 13,936 out of 57,789
  • Since beginning of last month:
    • Site-wide: 13,062 out of 57,789

The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

cell biology more details view paper
  • Downloaded 1,028 times
  • Download rankings, all-time:
    • Site-wide: 6,239 out of 57,789
    • In cell biology: 191 out of 2,743
  • Year to date:
    • Site-wide: 7,458 out of 57,789
  • Since beginning of last month:
    • Site-wide: 9,001 out of 57,789

Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells.

immunology more details view paper
  • Downloaded 1,016 times
  • Download rankings, all-time:
    • Site-wide: 6,365 out of 57,789
    • In immunology: 81 out of 1,387
  • Year to date:
    • Site-wide: 1,071 out of 57,789
  • Since beginning of last month:
    • Site-wide: 1,122 out of 57,789

Scalable volumetric imaging for ultrahigh-speed brain mapping at synaptic resolution

neuroscience more details view paper
  • Downloaded 932 times
  • Download rankings, all-time:
    • Site-wide: 7,288 out of 57,789
    • In neuroscience: 1,115 out of 10,199
  • Year to date:
    • Site-wide: 9,654 out of 57,789
  • Since beginning of last month:
    • Site-wide: 12,351 out of 57,789

Mocap: Large-scale inference of transcription factor binding sites from chromatin accessibility

bioinformatics more details view paper
  • Downloaded 925 times
  • Download rankings, all-time:
    • Site-wide: 7,385 out of 57,789
    • In bioinformatics: 1,328 out of 5,897
  • Year to date:
    • Site-wide: 47,121 out of 57,789
  • Since beginning of last month:
    • Site-wide: 42,308 out of 57,789

pathwayPCA: an R package for integrative pathway analysis with modern PCA methodology and gene selection

bioinformatics more details view paper
  • Downloaded 582 times
  • Download rankings, all-time:
    • Site-wide: 14,470 out of 57,789
    • In bioinformatics: 2,318 out of 5,897
  • Year to date:
    • Site-wide: 2,831 out of 57,789
  • Since beginning of last month:
    • Site-wide: 9,749 out of 57,789

Integrative analysis of single cell genomics data by coupled nonnegative matrix factorizations

bioinformatics more details view paper
  • Downloaded 532 times
  • Download rankings, all-time:
    • Site-wide: 16,252 out of 57,789
    • In bioinformatics: 2,525 out of 5,897
  • Year to date:
    • Site-wide: 27,665 out of 57,789
  • Since beginning of last month:
    • Site-wide: 23,231 out of 57,789

Rap2 and TNIK control Plexin-dependent synaptic tiling in C. elegans

neuroscience more details view paper
  • Downloaded 497 times
  • Download rankings, all-time:
    • Site-wide: 17,759 out of 57,789
    • In neuroscience: 2,918 out of 10,199
  • Year to date:
    • Site-wide: 43,686 out of 57,789
  • Since beginning of last month:
    • Site-wide: 31,872 out of 57,789

Evaluating Protein Transfer Learning with TAPE

synthetic biology more details view paper
  • Downloaded 389 times
  • Download rankings, all-time:
    • Site-wide: 23,385 out of 57,789
    • In synthetic biology: 357 out of 555
  • Year to date:
    • Site-wide: 5,510 out of 57,789
  • Since beginning of last month:
    • Site-wide: 1,601 out of 57,789

Rora regulates activated T helper cells during inflammation

immunology more details view paper
  • Downloaded 352 times
  • Download rankings, all-time:
    • Site-wide: 25,905 out of 57,789
    • In immunology: 474 out of 1,387
  • Year to date:
    • Site-wide: 6,518 out of 57,789
  • Since beginning of last month:
    • Site-wide: 484 out of 57,789

Cholecystokinin release triggered by presynaptic NMDA receptors produces LTP and sound-sound associative memory formation

neuroscience more details view paper
  • Downloaded 329 times
  • Download rankings, all-time:
    • Site-wide: 27,567 out of 57,789
    • In neuroscience: 4,653 out of 10,199
  • Year to date:
    • Site-wide: 27,554 out of 57,789
  • Since beginning of last month:
    • Site-wide: 37,394 out of 57,789

12h-clock control of central dogma information flow by XBP1s

systems biology more details view paper
  • Downloaded 294 times
  • Download rankings, all-time:
    • Site-wide: 30,510 out of 57,789
    • In systems biology: 961 out of 1,638
  • Year to date:
    • Site-wide: 8,692 out of 57,789
  • Since beginning of last month:
    • Site-wide: 15,692 out of 57,789

Quantitative Real-Time Imaging of Glutathione with Sub-Cellular Resolution

cell biology more details view paper
  • Downloaded 268 times
  • Download rankings, all-time:
    • Site-wide: 32,940 out of 57,789
    • In cell biology: 1,554 out of 2,743
  • Year to date:
    • Site-wide: 26,672 out of 57,789
  • Since beginning of last month:
    • Site-wide: 23,048 out of 57,789

coMethDMR: Accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies

bioinformatics more details view paper
  • Downloaded 255 times
  • Download rankings, all-time:
    • Site-wide: 34,252 out of 57,789
    • In bioinformatics: 4,257 out of 5,897
  • Year to date:
    • Site-wide: 10,884 out of 57,789
  • Since beginning of last month:
    • Site-wide: 13,286 out of 57,789

Disentangling the contribution of childhood and adulthood circumstances and genetics to phenotypic aging: prospective cohort study

epidemiology more details view paper
  • Downloaded 249 times
  • Download rankings, all-time:
    • Site-wide: 34,919 out of 57,789
    • In epidemiology: 596 out of 1,556
  • Year to date:
    • Site-wide: 31,296 out of 57,789
  • Since beginning of last month:
    • Site-wide: 25,046 out of 57,789

Knowledge-guided analysis of 'omics' data using the KnowEnG cloud platform

cancer biology more details view paper
  • Downloaded 242 times
  • Download rankings, all-time:
    • Site-wide: 35,571 out of 57,789
    • In cancer biology: 1,098 out of 1,870
  • Year to date:
    • Site-wide: 11,736 out of 57,789
  • Since beginning of last month:
    • Site-wide: 10,800 out of 57,789

Unconsciously Implanted Visuoauditory Memory in the Presence of Cholecystokinin Retrieved in Behavioral Contexts

neuroscience more details view paper
  • Downloaded 218 times
  • Download rankings, all-time:
    • Site-wide: 38,146 out of 57,789
    • In neuroscience: 6,591 out of 10,199
  • Year to date:
    • Site-wide: 42,489 out of 57,789
  • Since beginning of last month:
    • Site-wide: 54,097 out of 57,789

Growth Factor Independent 1 is a tumor suppressor gene in colorectal cancer

cancer biology more details view paper
  • Downloaded 217 times
  • Download rankings, all-time:
    • Site-wide: 38,282 out of 57,789
    • In cancer biology: 1,191 out of 1,870
  • Year to date:
    • Site-wide: 23,937 out of 57,789
  • Since beginning of last month:
    • Site-wide: 17,671 out of 57,789

MassComp, a lossless compressor for mass spectrometry data

bioinformatics more details view paper
  • Downloaded 211 times
  • Download rankings, all-time:
    • Site-wide: 38,994 out of 57,789
    • In bioinformatics: 4,624 out of 5,897
  • Year to date:
    • Site-wide: 14,210 out of 57,789
  • Since beginning of last month:
    • Site-wide: 43,804 out of 57,789

ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach

bioinformatics more details view paper
  • Downloaded 211 times
  • Download rankings, all-time:
    • Site-wide: 38,952 out of 57,789
    • In bioinformatics: 4,626 out of 5,897
  • Year to date:
    • Site-wide: 50,340 out of 57,789
  • Since beginning of last month:
    • Site-wide: 52,544 out of 57,789

Alternative splicing and translation play important roles in parallel with transcriptional regulation during rice hypoxic germination

plant biology more details view paper
  • Downloaded 186 times
  • Download rankings, all-time:
    • Site-wide: 41,881 out of 57,789
    • In plant biology: 1,180 out of 1,599
  • Year to date:
    • Site-wide: 35,345 out of 57,789
  • Since beginning of last month:
    • Site-wide: 38,627 out of 57,789

Bayesian inference of differentially expressed transcripts and their abundance from multi-condition RNA-seq data

bioinformatics more details view paper
  • Downloaded 136 times
  • Download rankings, all-time:
    • Site-wide: 48,202 out of 57,789
    • In bioinformatics: 5,319 out of 5,897
  • Year to date:
    • Site-wide: 24,233 out of 57,789
  • Since beginning of last month:
    • Site-wide: 45,069 out of 57,789

MSIGNET: a Metropolis sampling-based method for global optimal significant network identification

bioinformatics more details view paper
  • Downloaded 133 times
  • Download rankings, all-time:
    • Site-wide: 48,486 out of 57,789
    • In bioinformatics: 5,333 out of 5,897
  • Year to date:
    • Site-wide: 55,568 out of 57,789
  • Since beginning of last month:
    • Site-wide: 56,255 out of 57,789

BICORN: An R package for integrative inference of de novo cis-regulatory modules

bioinformatics more details view paper
  • Downloaded 118 times
  • Download rankings, all-time:
    • Site-wide: 50,463 out of 57,789
    • In bioinformatics: 5,462 out of 5,897
  • Year to date:
    • Site-wide: 28,174 out of 57,789
  • Since beginning of last month:
    • Site-wide: 51,683 out of 57,789

Impact of Prior Cancer on Outcomes in Nasopharyngeal Carcinoma

epidemiology more details view paper
  • Downloaded 107 times
  • Download rankings, all-time:
    • Site-wide: 51,707 out of 57,789
    • In epidemiology: 1,240 out of 1,556
  • Year to date:
    • Site-wide: 30,646 out of 57,789
  • Since beginning of last month:
    • Site-wide: 53,485 out of 57,789

ChIP-GSM: cell type-specific cis-regulatory module inference for active regulatory element prediction

bioinformatics more details view paper
  • Downloaded 97 times
  • Download rankings, all-time:
    • Site-wide: 52,839 out of 57,789
    • In bioinformatics: 5,604 out of 5,897
  • Year to date:
    • Site-wide: 33,380 out of 57,789
  • Since beginning of last month:
    • Site-wide: 53,552 out of 57,789

Retrieval Practice Facilitates Judgments of Learning Through Multiple Mechanisms

neuroscience more details view paper
  • Downloaded 97 times
  • Download rankings, all-time:
    • Site-wide: 52,790 out of 57,789
    • In neuroscience: 9,275 out of 10,199
  • Year to date:
    • Site-wide: 33,400 out of 57,789
  • Since beginning of last month:
    • Site-wide: 55,565 out of 57,789

GIP: A Gene network-based integrative approach for Inferring disease-associated signaling Pathways

bioinformatics more details view paper
  • Downloaded 96 times
  • Download rankings, all-time:
    • Site-wide: 52,864 out of 57,789
    • In bioinformatics: 5,615 out of 5,897
  • Year to date:
    • Site-wide: 33,801 out of 57,789
  • Since beginning of last month:
    • Site-wide: 41,854 out of 57,789

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