Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,506 bioRxiv papers from 264,779 authors.

Author: Sarah A Teichmann

Rankings

  • All-time downloads: 56,452 (rank: 202 out of 264,779)
  • Categories:
    • bioinformatics: 10,030 (rank: 271 out of 23,124)
    • cancer biology: 2,097 (rank: 758 (tie) out of 15,291)
    • cell biology: 2,334 (rank: 597 out of 16,783)
    • developmental biology: 4,311 (rank: 57 out of 9,402)
    • evolutionary biology: 2,415 (rank: 689 (tie) out of 14,389)
    • genomics: 20,210 (rank: 300 out of 30,243)
    • immunology: 12,369 (rank: 11 out of 11,212)
    • systems biology: 2,686 (rank: 439 (tie) out of 7,794)

Downloads per author, site-wide

Preprints

Rora regulates activated T helper cells during inflammation

immunology more details view paper

No bioRxiv download data for this paper yet.

Power Analysis of Single Cell RNA‐Sequencing Experiments

genomics more details view paper
  • Downloaded 9,297 times
  • Download rankings, all-time:
    • Site-wide: 112 out of 57,506
    • In genomics: 36 out of 4,027
  • Year to date:
    • Site-wide: 6,757 out of 57,506
  • Since beginning of last month:
    • Site-wide: 11,776 out of 57,506

A rapid and robust method for single cell chromatin accessibility profiling

genomics more details view paper
  • Downloaded 5,020 times
  • Download rankings, all-time:
    • Site-wide: 366 out of 57,506
    • In genomics: 97 out of 4,027
  • Year to date:
    • Site-wide: 450 out of 57,506
  • Since beginning of last month:
    • Site-wide: 2,327 out of 57,506

Single cell transcriptomics of regulatory T cells reveals trajectories of tissue adaptation

immunology more details view paper
  • Downloaded 4,173 times
  • Download rankings, all-time:
    • Site-wide: 523 out of 57,506
    • In immunology: 6 out of 1,372
  • Year to date:
    • Site-wide: 854 out of 57,506
  • Since beginning of last month:
    • Site-wide: 1,992 out of 57,506

Assessment of batch-correction methods for scRNA-seq data with a new test metric

bioinformatics more details view paper
  • Downloaded 3,395 times
  • Download rankings, all-time:
    • Site-wide: 789 out of 57,506
    • In bioinformatics: 153 out of 5,863
  • Year to date:
    • Site-wide: 1,002 out of 57,506
  • Since beginning of last month:
    • Site-wide: 2,345 out of 57,506

Genome-wide CRISPR screens in T helper cells reveal pervasive cross-talk between activation and differentiation

immunology more details view paper
  • Downloaded 2,952 times
  • Download rankings, all-time:
    • Site-wide: 1,012 out of 57,506
    • In immunology: 13 out of 1,372
  • Year to date:
    • Site-wide: 3,079 out of 57,506
  • Since beginning of last month:
    • Site-wide: 12,802 out of 57,506

Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics

developmental biology more details view paper
  • Downloaded 2,949 times
  • Download rankings, all-time:
    • Site-wide: 1,018 out of 57,506
    • In developmental biology: 13 out of 1,702
  • Year to date:
    • Site-wide: 1,505 out of 57,506
  • Since beginning of last month:
    • Site-wide: 4,056 out of 57,506

Fast Batch Alignment of Single Cell Transcriptomes Unifies Multiple Mouse Cell Atlases into an Integrated Landscape

bioinformatics more details view paper
  • Downloaded 2,921 times
  • Download rankings, all-time:
    • Site-wide: 1,041 out of 57,506
    • In bioinformatics: 213 out of 5,863
  • Year to date:
    • Site-wide: 486 out of 57,506
  • Since beginning of last month:
    • Site-wide: 1,064 out of 57,506

Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

genomics more details view paper
  • Downloaded 2,740 times
  • Download rankings, all-time:
    • Site-wide: 1,177 out of 57,506
    • In genomics: 276 out of 4,027
  • Year to date:
    • Site-wide: 376 out of 57,506
  • Since beginning of last month:
    • Site-wide: 88 out of 57,506

Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

systems biology more details view paper
  • Downloaded 2,686 times
  • Download rankings, all-time:
    • Site-wide: 1,216 out of 57,506
    • In systems biology: 24 out of 1,638
  • Year to date:
    • Site-wide: 18,950 out of 57,506
  • Since beginning of last month:
    • Site-wide: 14,400 out of 57,506

SpatialDE - Identification of spatially variable genes

genomics more details view paper
  • Downloaded 2,626 times
  • Download rankings, all-time:
    • Site-wide: 1,267 out of 57,506
    • In genomics: 300 out of 4,027
  • Year to date:
    • Site-wide: 11,253 out of 57,506
  • Since beginning of last month:
    • Site-wide: 20,728 out of 57,506

Simultaneously inferring T cell fate and clonality from single cell transcriptomes

bioinformatics more details view paper
  • Downloaded 2,556 times
  • Download rankings, all-time:
    • Site-wide: 1,321 out of 57,506
    • In bioinformatics: 267 out of 5,863
  • Year to date:
    • Site-wide: 25,810 out of 57,506
  • Since beginning of last month:
    • Site-wide: 27,120 out of 57,506

Gene expression variability across cells and species shapes innate immunity

evolutionary biology more details view paper
  • Downloaded 2,415 times
  • Download rankings, all-time:
    • Site-wide: 1,471 out of 57,506
    • In evolutionary biology: 64 out of 3,940
  • Year to date:
    • Site-wide: 10,649 out of 57,506
  • Since beginning of last month:
    • Site-wide: 13,086 out of 57,506

A cellular census of healthy lung and asthmatic airway wall identifies novel cell states in health and disease

immunology more details view paper
  • Downloaded 2,113 times
  • Download rankings, all-time:
    • Site-wide: 1,854 out of 57,506
    • In immunology: 22 out of 1,372
  • Year to date:
    • Site-wide: 237 out of 57,506
  • Since beginning of last month:
    • Site-wide: 774 out of 57,506

Single-cell RNA sequencing reveals a dynamic stromal niche within the evolving tumour microenvironment

cancer biology more details view paper
  • Downloaded 2,097 times
  • Download rankings, all-time:
    • Site-wide: 1,878 out of 57,506
    • In cancer biology: 44 out of 1,856
  • Year to date:
    • Site-wide: 597 out of 57,506
  • Since beginning of last month:
    • Site-wide: 789 out of 57,506

Single-cell transcriptomics identifies CD44 as a new marker and regulator of haematopoietic stem cells development

developmental biology more details view paper
  • Downloaded 1,362 times
  • Download rankings, all-time:
    • Site-wide: 3,914 out of 57,506
    • In developmental biology: 69 out of 1,702
  • Year to date:
    • Site-wide: 3,288 out of 57,506
  • Since beginning of last month:
    • Site-wide: 2,829 out of 57,506

BraCeR: Reconstruction of B-cell receptor sequences and clonality inference from single-cell RNA-sequencing

bioinformatics more details view paper
  • Downloaded 1,158 times
  • Download rankings, all-time:
    • Site-wide: 5,063 out of 57,506
    • In bioinformatics: 987 out of 5,863
  • Year to date:
    • Site-wide: 11,418 out of 57,506
  • Since beginning of last month:
    • Site-wide: 15,654 out of 57,506

The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

cell biology more details view paper
  • Downloaded 1,028 times
  • Download rankings, all-time:
    • Site-wide: 6,184 out of 57,506
    • In cell biology: 186 out of 2,723
  • Year to date:
    • Site-wide: 7,293 out of 57,506
  • Since beginning of last month:
    • Site-wide: 7,868 out of 57,506

Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells.

immunology more details view paper
  • Downloaded 1,016 times
  • Download rankings, all-time:
    • Site-wide: 6,306 out of 57,506
    • In immunology: 77 out of 1,372
  • Year to date:
    • Site-wide: 1,037 out of 57,506
  • Since beginning of last month:
    • Site-wide: 976 out of 57,506

Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging

immunology more details view paper
  • Downloaded 867 times
  • Download rankings, all-time:
    • Site-wide: 8,106 out of 57,506
    • In immunology: 116 out of 1,372
  • Year to date:
    • Site-wide: 13,396 out of 57,506
  • Since beginning of last month:
    • Site-wide: 13,802 out of 57,506

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immunity

immunology more details view paper
  • Downloaded 784 times
  • Download rankings, all-time:
    • Site-wide: 9,473 out of 57,506
    • In immunology: 141 out of 1,372
  • Year to date:
    • Site-wide: 39,992 out of 57,506
  • Since beginning of last month:
    • Site-wide: 33,754 out of 57,506

CellPhoneDB v2.0: Inferring cell-cell communication from combined expression of multi-subunit receptor-ligand complexes

cell biology more details view paper
  • Downloaded 750 times
  • Download rankings, all-time:
    • Site-wide: 10,081 out of 57,506
    • In cell biology: 364 out of 2,723
  • Year to date:
    • Site-wide: 1,745 out of 57,506
  • Since beginning of last month:
    • Site-wide: 431 out of 57,506

Cotranslational assembly imposes evolutionary constraints on homomeric proteins

cell biology more details view paper
  • Downloaded 556 times
  • Download rankings, all-time:
    • Site-wide: 15,300 out of 57,506
    • In cell biology: 594 out of 2,723
  • Year to date:
    • Site-wide: 38,164 out of 57,506
  • Since beginning of last month:
    • Site-wide: 44,699 out of 57,506

Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression

genomics more details view paper
  • Downloaded 527 times
  • Download rankings, all-time:
    • Site-wide: 16,370 out of 57,506
    • In genomics: 2,050 out of 4,027
  • Year to date:
    • Site-wide: 48,680 out of 57,506
  • Since beginning of last month:
    • Site-wide: 42,467 out of 57,506

Tumors induce de novo steroid biosynthesis in T cells to evade immunity

immunology more details view paper
  • Downloaded 464 times
  • Download rankings, all-time:
    • Site-wide: 19,104 out of 57,506
    • In immunology: 321 out of 1,372
  • Year to date:
    • Site-wide: 14,556 out of 57,506
  • Since beginning of last month:
    • Site-wide: 26,972 out of 57,506

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News