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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 65,080 bioRxiv papers from 288,410 authors.

Author: Sarah A Teichmann

Rankings

  • All-time downloads: 80,146 (rank: 153 out of 288,410)
  • Categories:
    • bioinformatics: 10,836 (rank: 256 out of 25,113)
    • cancer biology: 2,614 (rank: 671 (tie) out of 17,961)
    • cell biology: 15,305 (rank: 13 out of 19,305)
    • developmental biology: 8,448 (rank: 6 out of 10,821)
    • evolutionary biology: 2,467 (rank: 763 (tie) out of 15,751)
    • genomics: 22,637 (rank: 280 out of 32,809)
    • immunology: 15,111 (rank: 11 out of 13,250)
    • systems biology: 2,728 (rank: 494 (tie) out of 8,745)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,746 times
  • Download rankings, all-time:
    • Site-wide: 80 out of 65,080
    • In cell biology: 3 out of 3,129
  • Year to date:
    • Site-wide: 4,877 out of 65,080
  • Since beginning of last month:
    • Site-wide: 6,458 out of 65,080

Power Analysis of Single Cell RNA‐Sequencing Experiments

genomics more details view paper
  • Downloaded 9,387 times
  • Download rankings, all-time:
    • Site-wide: 129 out of 65,080
    • In genomics: 40 out of 4,446
  • Year to date:
    • Site-wide: 7,388 out of 65,080
  • Since beginning of last month:
    • Site-wide: 13,876 out of 65,080

A rapid and robust method for single cell chromatin accessibility profiling

genomics more details view paper
  • Downloaded 5,183 times
  • Download rankings, all-time:
    • Site-wide: 397 out of 65,080
    • In genomics: 104 out of 4,446
  • Year to date:
    • Site-wide: 645 out of 65,080
  • Since beginning of last month:
    • Site-wide: 5,736 out of 65,080

Single cell transcriptomics of regulatory T cells reveals trajectories of tissue adaptation

immunology more details view paper
  • Downloaded 4,414 times
  • Download rankings, all-time:
    • Site-wide: 544 out of 65,080
    • In immunology: 7 out of 1,646
  • Year to date:
    • Site-wide: 990 out of 65,080
  • Since beginning of last month:
    • Site-wide: 3,712 out of 65,080

Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

genomics more details view paper
  • Downloaded 3,898 times
  • Download rankings, all-time:
    • Site-wide: 690 out of 65,080
    • In genomics: 181 out of 4,446
  • Year to date:
    • Site-wide: 233 out of 65,080
  • Since beginning of last month:
    • Site-wide: 2,291 out of 65,080

Assessment of batch-correction methods for scRNA-seq data with a new test metric

bioinformatics more details view paper
  • Downloaded 3,814 times
  • Download rankings, all-time:
    • Site-wide: 726 out of 65,080
    • In bioinformatics: 140 out of 6,438
  • Year to date:
    • Site-wide: 867 out of 65,080
  • Since beginning of last month:
    • Site-wide: 770 out of 65,080

Fast Batch Alignment of Single Cell Transcriptomes Unifies Multiple Mouse Cell Atlases into an Integrated Landscape

bioinformatics more details view paper
  • Downloaded 3,228 times
  • Download rankings, all-time:
    • Site-wide: 974 out of 65,080
    • In bioinformatics: 197 out of 6,438
  • Year to date:
    • Site-wide: 582 out of 65,080
  • Since beginning of last month:
    • Site-wide: 1,702 out of 65,080

Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics

developmental biology more details view paper
  • Downloaded 3,145 times
  • Download rankings, all-time:
    • Site-wide: 1,033 out of 65,080
    • In developmental biology: 15 out of 1,927
  • Year to date:
    • Site-wide: 1,678 out of 65,080
  • Since beginning of last month:
    • Site-wide: 3,440 out of 65,080

Genome-wide CRISPR screens in T helper cells reveal pervasive cross-talk between activation and differentiation

immunology more details view paper
  • Downloaded 3,048 times
  • Download rankings, all-time:
    • Site-wide: 1,100 out of 65,080
    • In immunology: 16 out of 1,646
  • Year to date:
    • Site-wide: 3,770 out of 65,080
  • Since beginning of last month:
    • Site-wide: 14,018 out of 65,080

Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

systems biology more details view paper
  • Downloaded 2,728 times
  • Download rankings, all-time:
    • Site-wide: 1,343 out of 65,080
    • In systems biology: 30 out of 1,833
  • Year to date:
    • Site-wide: 21,789 out of 65,080
  • Since beginning of last month:
    • Site-wide: 52,350 out of 65,080

A cellular census of healthy lung and asthmatic airway wall identifies novel cell states in health and disease

immunology more details view paper
  • Downloaded 2,728 times
  • Download rankings, all-time:
    • Site-wide: 1,342 out of 65,080
    • In immunology: 18 out of 1,646
  • Year to date:
    • Site-wide: 251 out of 65,080
  • Since beginning of last month:
    • Site-wide: 764 out of 65,080

SpatialDE - Identification of spatially variable genes

genomics more details view paper
  • Downloaded 2,711 times
  • Download rankings, all-time:
    • Site-wide: 1,356 out of 65,080
    • In genomics: 309 out of 4,446
  • Year to date:
    • Site-wide: 11,332 out of 65,080
  • Since beginning of last month:
    • Site-wide: 14,516 out of 65,080

Single-cell RNA sequencing reveals a dynamic stromal niche within the evolving tumour microenvironment

cancer biology more details view paper
  • Downloaded 2,614 times
  • Download rankings, all-time:
    • Site-wide: 1,436 out of 65,080
    • In cancer biology: 40 out of 2,166
  • Year to date:
    • Site-wide: 539 out of 65,080
  • Since beginning of last month:
    • Site-wide: 837 out of 65,080

Simultaneously inferring T cell fate and clonality from single cell transcriptomes

bioinformatics more details view paper
  • Downloaded 2,593 times
  • Download rankings, all-time:
    • Site-wide: 1,463 out of 65,080
    • In bioinformatics: 289 out of 6,438
  • Year to date:
    • Site-wide: 29,035 out of 65,080
  • Since beginning of last month:
    • Site-wide: 29,053 out of 65,080

Gene expression variability across cells and species shapes innate immunity

evolutionary biology more details view paper
  • Downloaded 2,467 times
  • Download rankings, all-time:
    • Site-wide: 1,603 out of 65,080
    • In evolutionary biology: 68 out of 4,347
  • Year to date:
    • Site-wide: 12,767 out of 65,080
  • Since beginning of last month:
    • Site-wide: 34,706 out of 65,080

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 2,344 times
  • Download rankings, all-time:
    • Site-wide: 1,765 out of 65,080
    • In developmental biology: 22 out of 1,927
  • Year to date:
    • Site-wide: 344 out of 65,080
  • Since beginning of last month:
    • Site-wide: 351 out of 65,080

CellPhoneDB v2.0: Inferring cell-cell communication from combined expression of multi-subunit receptor-ligand complexes

cell biology more details view paper
  • Downloaded 1,858 times
  • Download rankings, all-time:
    • Site-wide: 2,640 out of 65,080
    • In cell biology: 68 out of 3,129
  • Year to date:
    • Site-wide: 536 out of 65,080
  • Since beginning of last month:
    • Site-wide: 183 out of 65,080

Single-cell transcriptomics identifies CD44 as a new marker and regulator of haematopoietic stem cells development

developmental biology more details view paper
  • Downloaded 1,524 times
  • Download rankings, all-time:
    • Site-wide: 3,694 out of 65,080
    • In developmental biology: 53 out of 1,927
  • Year to date:
    • Site-wide: 3,374 out of 65,080
  • Since beginning of last month:
    • Site-wide: 6,290 out of 65,080

Establishment In Culture Of Expanded Potential Stem Cells

developmental biology more details view paper
  • Downloaded 1,435 times
  • Download rankings, all-time:
    • Site-wide: 4,095 out of 65,080
    • In developmental biology: 72 out of 1,927
  • Year to date:
    • Site-wide: 29,864 out of 65,080
  • Since beginning of last month:
    • Site-wide: 20,586 out of 65,080

BraCeR: Reconstruction of B-cell receptor sequences and clonality inference from single-cell RNA-sequencing

bioinformatics more details view paper
  • Downloaded 1,201 times
  • Download rankings, all-time:
    • Site-wide: 5,491 out of 65,080
    • In bioinformatics: 1,049 out of 6,438
  • Year to date:
    • Site-wide: 14,128 out of 65,080
  • Since beginning of last month:
    • Site-wide: 33,130 out of 65,080

Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells.

immunology more details view paper
  • Downloaded 1,192 times
  • Download rankings, all-time:
    • Site-wide: 5,552 out of 65,080
    • In immunology: 75 out of 1,646
  • Year to date:
    • Site-wide: 1,264 out of 65,080
  • Since beginning of last month:
    • Site-wide: 7,265 out of 65,080

The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

cell biology more details view paper
  • Downloaded 1,123 times
  • Download rankings, all-time:
    • Site-wide: 6,149 out of 65,080
    • In cell biology: 186 out of 3,129
  • Year to date:
    • Site-wide: 7,683 out of 65,080
  • Since beginning of last month:
    • Site-wide: 12,177 out of 65,080

Resolving the fibrotic niche of human liver cirrhosis using single-cell transcriptomics

immunology more details view paper
  • Downloaded 972 times
  • Download rankings, all-time:
    • Site-wide: 7,778 out of 65,080
    • In immunology: 125 out of 1,646
  • Year to date:
    • Site-wide: 1,805 out of 65,080
  • Since beginning of last month:
    • Site-wide: 306 out of 65,080

Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging

immunology more details view paper
  • Downloaded 936 times
  • Download rankings, all-time:
    • Site-wide: 8,285 out of 65,080
    • In immunology: 132 out of 1,646
  • Year to date:
    • Site-wide: 14,074 out of 65,080
  • Since beginning of last month:
    • Site-wide: 18,463 out of 65,080

Comparative analysis of sequencing technologies platforms for single-cell transcriptomics

genomics more details view paper
  • Downloaded 918 times
  • Download rankings, all-time:
    • Site-wide: 8,559 out of 65,080
    • In genomics: 1,322 out of 4,446
  • Year to date:
    • Site-wide: 5,924 out of 65,080
  • Since beginning of last month:
    • Site-wide: 31,548 out of 65,080

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immunity

immunology more details view paper
  • Downloaded 818 times
  • Download rankings, all-time:
    • Site-wide: 10,193 out of 65,080
    • In immunology: 163 out of 1,646
  • Year to date:
    • Site-wide: 41,964 out of 65,080
  • Since beginning of last month:
    • Site-wide: 22,824 out of 65,080

Cotranslational assembly imposes evolutionary constraints on homomeric proteins

cell biology more details view paper
  • Downloaded 578 times
  • Download rankings, all-time:
    • Site-wide: 16,753 out of 65,080
    • In cell biology: 686 out of 3,129
  • Year to date:
    • Site-wide: 44,354 out of 65,080
  • Since beginning of last month:
    • Site-wide: 44,565 out of 65,080

Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression

genomics more details view paper
  • Downloaded 540 times
  • Download rankings, all-time:
    • Site-wide: 18,356 out of 65,080
    • In genomics: 2,200 out of 4,446
  • Year to date:
    • Site-wide: 56,895 out of 65,080
  • Since beginning of last month:
    • Site-wide: 63,162 out of 65,080

Tumors induce de novo steroid biosynthesis in T cells to evade immunity

immunology more details view paper
  • Downloaded 533 times
  • Download rankings, all-time:
    • Site-wide: 18,656 out of 65,080
    • In immunology: 333 out of 1,646
  • Year to date:
    • Site-wide: 14,971 out of 65,080
  • Since beginning of last month:
    • Site-wide: 13,726 out of 65,080

Rora regulates activated T helper cells during inflammation

immunology more details view paper
  • Downloaded 470 times
  • Download rankings, all-time:
    • Site-wide: 21,802 out of 65,080
    • In immunology: 395 out of 1,646
  • Year to date:
    • Site-wide: 6,327 out of 65,080
  • Since beginning of last month:
    • Site-wide: 7,988 out of 65,080

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