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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 53,027 bioRxiv papers from 245,564 authors.

Author: Sarah A Teichmann

Rankings

  • All-time downloads: 50,949 (rank: 224 out of 245,564)
  • Categories:
    • bioinformatics: 9,446 (rank: 266 out of 21,734)
    • cancer biology: 1,716 (rank: 935 (tie) out of 13,800)
    • cell biology: 1,476 (rank: 1,009 out of 15,453)
    • developmental biology: 3,954 (rank: 50 out of 8,504)
    • evolutionary biology: 2,366 (rank: 645 (tie) out of 13,604)
    • genomics: 18,929 (rank: 310 out of 28,414)
    • immunology: 10,428 (rank: 11 out of 9,915)
    • systems biology: 2,634 (rank: 409 (tie) out of 7,301)

Downloads per author, site-wide

Preprints

CellPhoneDB v2.0: Inferring cell-cell communication from combined expression of multi-subunit receptor-ligand complexes

cell biology more details view paper

No bioRxiv download data for this paper yet.

Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells.

immunology more details view paper

No bioRxiv download data for this paper yet.

Power Analysis of Single Cell RNA‐Sequencing Experiments

genomics more details view paper
  • Downloaded 9,218 times
  • Download rankings, all-time:
    • Site-wide: 106 out of 53,027
    • In genomics: 36 out of 3,782
  • Year to date:
    • Site-wide: 6,629 out of 53,027
  • Since beginning of last month:
    • Site-wide: 8,677 out of 53,027

A rapid and robust method for single cell chromatin accessibility profiling

genomics more details view paper
  • Downloaded 4,841 times
  • Download rankings, all-time:
    • Site-wide: 349 out of 53,027
    • In genomics: 91 out of 3,782
  • Year to date:
    • Site-wide: 353 out of 53,027
  • Since beginning of last month:
    • Site-wide: 1,241 out of 53,027

Single cell transcriptomics of regulatory T cells reveals trajectories of tissue adaptation

immunology more details view paper
  • Downloaded 3,954 times
  • Download rankings, all-time:
    • Site-wide: 531 out of 53,027
    • In immunology: 6 out of 1,225
  • Year to date:
    • Site-wide: 815 out of 53,027
  • Since beginning of last month:
    • Site-wide: 1,790 out of 53,027

Assessment of batch-correction methods for scRNA-seq data with a new test metric

bioinformatics more details view paper
  • Downloaded 3,206 times
  • Download rankings, all-time:
    • Site-wide: 795 out of 53,027
    • In bioinformatics: 162 out of 5,533
  • Year to date:
    • Site-wide: 915 out of 53,027
  • Since beginning of last month:
    • Site-wide: 1,843 out of 53,027

Genome-wide CRISPR screens in T helper cells reveal pervasive cross-talk between activation and differentiation

immunology more details view paper
  • Downloaded 2,891 times
  • Download rankings, all-time:
    • Site-wide: 957 out of 53,027
    • In immunology: 11 out of 1,225
  • Year to date:
    • Site-wide: 2,443 out of 53,027
  • Since beginning of last month:
    • Site-wide: 8,651 out of 53,027

Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics

developmental biology more details view paper
  • Downloaded 2,743 times
  • Download rankings, all-time:
    • Site-wide: 1,059 out of 53,027
    • In developmental biology: 9 out of 1,555
  • Year to date:
    • Site-wide: 1,617 out of 53,027
  • Since beginning of last month:
    • Site-wide: 4,790 out of 53,027

Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

systems biology more details view paper
  • Downloaded 2,634 times
  • Download rankings, all-time:
    • Site-wide: 1,129 out of 53,027
    • In systems biology: 23 out of 1,548
  • Year to date:
    • Site-wide: 19,581 out of 53,027
  • Since beginning of last month:
    • Site-wide: 17,346 out of 53,027

Fast Batch Alignment of Single Cell Transcriptomes Unifies Multiple Mouse Cell Atlases into an Integrated Landscape

bioinformatics more details view paper
  • Downloaded 2,614 times
  • Download rankings, all-time:
    • Site-wide: 1,142 out of 53,027
    • In bioinformatics: 240 out of 5,533
  • Year to date:
    • Site-wide: 480 out of 53,027
  • Since beginning of last month:
    • Site-wide: 772 out of 53,027

SpatialDE - Identification of spatially variable genes

genomics more details view paper
  • Downloaded 2,577 times
  • Download rankings, all-time:
    • Site-wide: 1,169 out of 53,027
    • In genomics: 276 out of 3,782
  • Year to date:
    • Site-wide: 10,124 out of 53,027
  • Since beginning of last month:
    • Site-wide: 16,021 out of 53,027

Simultaneously inferring T cell fate and clonality from single cell transcriptomes

bioinformatics more details view paper
  • Downloaded 2,519 times
  • Download rankings, all-time:
    • Site-wide: 1,222 out of 53,027
    • In bioinformatics: 249 out of 5,533
  • Year to date:
    • Site-wide: 24,951 out of 53,027
  • Since beginning of last month:
    • Site-wide: 26,665 out of 53,027

Gene expression variability across cells and species shapes innate immunity

evolutionary biology more details view paper
  • Downloaded 2,366 times
  • Download rankings, all-time:
    • Site-wide: 1,381 out of 53,027
    • In evolutionary biology: 62 out of 3,696
  • Year to date:
    • Site-wide: 9,475 out of 53,027
  • Since beginning of last month:
    • Site-wide: 16,910 out of 53,027

Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

genomics more details view paper
  • Downloaded 1,792 times
  • Download rankings, all-time:
    • Site-wide: 2,230 out of 53,027
    • In genomics: 476 out of 3,782
  • Year to date:
    • Site-wide: 1,127 out of 53,027
  • Since beginning of last month:
    • Site-wide: 1,562 out of 53,027

Single-cell RNA sequencing reveals a dynamic stromal niche within the evolving tumour microenvironment

cancer biology more details view paper
  • Downloaded 1,716 times
  • Download rankings, all-time:
    • Site-wide: 2,387 out of 53,027
    • In cancer biology: 57 out of 1,706
  • Year to date:
    • Site-wide: 726 out of 53,027
  • Since beginning of last month:
    • Site-wide: 691 out of 53,027

A cellular census of healthy lung and asthmatic airway wall identifies novel cell states in health and disease

immunology more details view paper
  • Downloaded 1,594 times
  • Download rankings, all-time:
    • Site-wide: 2,707 out of 53,027
    • In immunology: 28 out of 1,225
  • Year to date:
    • Site-wide: 265 out of 53,027
  • Since beginning of last month:
    • Site-wide: 381 out of 53,027

Single-cell transcriptomics identifies CD44 as a new marker and regulator of haematopoietic stem cells development

developmental biology more details view paper
  • Downloaded 1,211 times
  • Download rankings, all-time:
    • Site-wide: 4,235 out of 53,027
    • In developmental biology: 76 out of 1,555
  • Year to date:
    • Site-wide: 3,771 out of 53,027
  • Since beginning of last month:
    • Site-wide: 4,248 out of 53,027

BraCeR: Reconstruction of B-cell receptor sequences and clonality inference from single-cell RNA-sequencing

bioinformatics more details view paper
  • Downloaded 1,107 times
  • Download rankings, all-time:
    • Site-wide: 4,886 out of 53,027
    • In bioinformatics: 965 out of 5,533
  • Year to date:
    • Site-wide: 10,471 out of 53,027
  • Since beginning of last month:
    • Site-wide: 11,800 out of 53,027

The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

cell biology more details view paper
  • Downloaded 950 times
  • Download rankings, all-time:
    • Site-wide: 6,272 out of 53,027
    • In cell biology: 187 out of 2,499
  • Year to date:
    • Site-wide: 7,283 out of 53,027
  • Since beginning of last month:
    • Site-wide: 7,264 out of 53,027

Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging

immunology more details view paper
  • Downloaded 809 times
  • Download rankings, all-time:
    • Site-wide: 8,039 out of 53,027
    • In immunology: 98 out of 1,225
  • Year to date:
    • Site-wide: 13,376 out of 53,027
  • Since beginning of last month:
    • Site-wide: 20,069 out of 53,027

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immunity

immunology more details view paper
  • Downloaded 759 times
  • Download rankings, all-time:
    • Site-wide: 8,868 out of 53,027
    • In immunology: 117 out of 1,225
  • Year to date:
    • Site-wide: 37,665 out of 53,027
  • Since beginning of last month:
    • Site-wide: 25,853 out of 53,027

Cotranslational assembly imposes evolutionary constraints on homomeric proteins

cell biology more details view paper
  • Downloaded 526 times
  • Download rankings, all-time:
    • Site-wide: 14,519 out of 53,027
    • In cell biology: 548 out of 2,499
  • Year to date:
    • Site-wide: 37,664 out of 53,027
  • Since beginning of last month:
    • Site-wide: 38,136 out of 53,027

Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression

genomics more details view paper
  • Downloaded 501 times
  • Download rankings, all-time:
    • Site-wide: 15,491 out of 53,027
    • In genomics: 1,960 out of 3,782
  • Year to date:
    • Site-wide: 48,257 out of 53,027
  • Since beginning of last month:
    • Site-wide: 39,078 out of 53,027

Tumors induce de novo steroid biosynthesis in T cells to evade immunity

immunology more details view paper
  • Downloaded 421 times
  • Download rankings, all-time:
    • Site-wide: 18,952 out of 53,027
    • In immunology: 299 out of 1,225
  • Year to date:
    • Site-wide: 13,166 out of 53,027
  • Since beginning of last month:
    • Site-wide: 12,838 out of 53,027

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