Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,235 bioRxiv papers from 306,680 authors.

Author: Sarah A Teichmann

Rankings

  • All-time downloads: 80,435 (rank: 154 out of 306,635)
  • Categories:
    • biochemistry: 180 (rank: 9,781 (tie) out of 12,353)
    • bioinformatics: 11,197 (rank: 271 out of 26,738)
    • cancer biology: 2,886 (rank: 652 (tie) out of 19,860)
    • cell biology: 16,295 (rank: 14 out of 21,165)
    • developmental biology: 8,848 (rank: 11 out of 11,746)
    • evolutionary biology: 2,517 (rank: 853 (tie) out of 16,504)
    • genomics: 23,028 (rank: 280 out of 34,692)
    • immunology: 12,733 (rank: 12 out of 14,632)
    • systems biology: 2,751 (rank: 543 (tie) out of 9,233)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,841 times
  • Download rankings, all-time:
    • Site-wide: 90 out of 70,230
    • In cell biology: 3 out of 3,429
  • Year to date:
    • Site-wide: 8,324 out of 70,230
  • Since beginning of last month:
    • Site-wide: 8,301 out of 70,230

Power Analysis of Single Cell RNA‐Sequencing Experiments

genomics more details view paper
  • Downloaded 9,444 times
  • Download rankings, all-time:
    • Site-wide: 143 out of 70,230
    • In genomics: 41 out of 4,700
  • Year to date:
    • Site-wide: 19,127 out of 70,230
  • Since beginning of last month:
    • Site-wide: 13,356 out of 70,230

A rapid and robust method for single cell chromatin accessibility profiling

genomics more details view paper
  • Downloaded 5,276 times
  • Download rankings, all-time:
    • Site-wide: 416 out of 70,230
    • In genomics: 109 out of 4,700
  • Year to date:
    • Site-wide: 19,109 out of 70,230
  • Since beginning of last month:
    • Site-wide: 6,473 out of 70,230

Single cell transcriptomics of regulatory T cells reveals trajectories of tissue adaptation

immunology more details view paper
  • Downloaded 4,525 times
  • Download rankings, all-time:
    • Site-wide: 557 out of 70,230
    • In immunology: 7 out of 1,805
  • Year to date:
    • Site-wide: 8,768 out of 70,230
  • Since beginning of last month:
    • Site-wide: 4,900 out of 70,230

Cardelino: Integrating whole exomes and single-cell transcriptomes to reveal phenotypic impact of somatic variants

genomics more details view paper
  • Downloaded 4,042 times
  • Download rankings, all-time:
    • Site-wide: 703 out of 70,230
    • In genomics: 179 out of 4,700
  • Year to date:
    • Site-wide: 1,169 out of 70,230
  • Since beginning of last month:
    • Site-wide: 6,185 out of 70,230

Assessment of batch-correction methods for scRNA-seq data with a new test metric

bioinformatics more details view paper
  • Downloaded 3,980 times
  • Download rankings, all-time:
    • Site-wide: 724 out of 70,230
    • In bioinformatics: 141 out of 6,887
  • Year to date:
    • Site-wide: 1,365 out of 70,230
  • Since beginning of last month:
    • Site-wide: 5,179 out of 70,230

Fast Batch Alignment of Single Cell Transcriptomes Unifies Multiple Mouse Cell Atlases into an Integrated Landscape

bioinformatics more details view paper
  • Downloaded 3,345 times
  • Download rankings, all-time:
    • Site-wide: 1,000 out of 70,230
    • In bioinformatics: 195 out of 6,887
  • Year to date:
    • Site-wide: 28,358 out of 70,230
  • Since beginning of last month:
    • Site-wide: 4,639 out of 70,230

Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics

developmental biology more details view paper
  • Downloaded 3,227 times
  • Download rankings, all-time:
    • Site-wide: 1,086 out of 70,230
    • In developmental biology: 15 out of 2,102
  • Year to date:
    • Site-wide: 37,700 out of 70,230
  • Since beginning of last month:
    • Site-wide: 8,111 out of 70,230

Genome-wide CRISPR screens in T helper cells reveal pervasive cross-talk between activation and differentiation

immunology more details view paper
  • Downloaded 3,090 times
  • Download rankings, all-time:
    • Site-wide: 1,180 out of 70,230
    • In immunology: 16 out of 1,805
  • Year to date:
    • Site-wide: 35,841 out of 70,230
  • Since beginning of last month:
    • Site-wide: 21,345 out of 70,230

Single-cell RNA sequencing reveals a dynamic stromal niche within the evolving tumour microenvironment

cancer biology more details view paper
  • Downloaded 2,886 times
  • Download rankings, all-time:
    • Site-wide: 1,338 out of 70,230
    • In cancer biology: 37 out of 2,389
  • Year to date:
    • Site-wide: 3,567 out of 70,230
  • Since beginning of last month:
    • Site-wide: 1,677 out of 70,230

SpatialDE - Identification of spatially variable genes

genomics more details view paper
  • Downloaded 2,773 times
  • Download rankings, all-time:
    • Site-wide: 1,418 out of 70,230
    • In genomics: 322 out of 4,700
  • Year to date:
    • Site-wide: 14,078 out of 70,230
  • Since beginning of last month:
    • Site-wide: 10,279 out of 70,230

Temporal mixture modelling of single-cell RNA-seq data resolves a CD4+ T cell fate bifurcation

systems biology more details view paper
  • Downloaded 2,751 times
  • Download rankings, all-time:
    • Site-wide: 1,439 out of 70,230
    • In systems biology: 31 out of 1,936
  • Year to date:
    • Site-wide: 34,289 out of 70,230
  • Since beginning of last month:
    • Site-wide: 38,353 out of 70,230

CellPhoneDB v2.0: Inferring cell-cell communication from combined expression of multi-subunit receptor-ligand complexes

cell biology more details view paper
  • Downloaded 2,688 times
  • Download rankings, all-time:
    • Site-wide: 1,496 out of 70,230
    • In cell biology: 45 out of 3,429
  • Year to date:
    • Site-wide: 233 out of 70,230
  • Since beginning of last month:
    • Site-wide: 167 out of 70,230

Simultaneously inferring T cell fate and clonality from single cell transcriptomes

bioinformatics more details view paper
  • Downloaded 2,616 times
  • Download rankings, all-time:
    • Site-wide: 1,575 out of 70,230
    • In bioinformatics: 313 out of 6,887
  • Year to date:
    • Site-wide: 19,530 out of 70,230
  • Since beginning of last month:
    • Site-wide: 51,638 out of 70,230

Decoding the development of the blood and immune systems during human fetal liver haematopoiesis

developmental biology more details view paper
  • Downloaded 2,517 times
  • Download rankings, all-time:
    • Site-wide: 1,697 out of 70,230
    • In developmental biology: 22 out of 2,102
  • Year to date:
    • Site-wide: 34,071 out of 70,230
  • Since beginning of last month:
    • Site-wide: 3,169 out of 70,230

Gene expression variability across cells and species shapes innate immunity

evolutionary biology more details view paper
  • Downloaded 2,517 times
  • Download rankings, all-time:
    • Site-wide: 1,698 out of 70,230
    • In evolutionary biology: 72 out of 4,612
  • Year to date:
    • Site-wide: 16,769 out of 70,230
  • Since beginning of last month:
    • Site-wide: 17,427 out of 70,230

Single-cell transcriptomics identifies CD44 as a new marker and regulator of haematopoietic stem cells development

developmental biology more details view paper
  • Downloaded 1,624 times
  • Download rankings, all-time:
    • Site-wide: 3,636 out of 70,230
    • In developmental biology: 57 out of 2,102
  • Year to date:
    • Site-wide: 15,371 out of 70,230
  • Since beginning of last month:
    • Site-wide: 6,951 out of 70,230

Establishment In Culture Of Expanded Potential Stem Cells

developmental biology more details view paper
  • Downloaded 1,480 times
  • Download rankings, all-time:
    • Site-wide: 4,273 out of 70,230
    • In developmental biology: 76 out of 2,102
  • Year to date:
    • Site-wide: 29,494 out of 70,230
  • Since beginning of last month:
    • Site-wide: 36,501 out of 70,230

Transcriptome Dynamics Reveals Progressive Transition from Effector to Memory in CD4+ T cells.

immunology more details view paper
  • Downloaded 1,311 times
  • Download rankings, all-time:
    • Site-wide: 5,222 out of 70,230
    • In immunology: 79 out of 1,805
  • Year to date:
    • Site-wide: 37,091 out of 70,230
  • Since beginning of last month:
    • Site-wide: 4,570 out of 70,230

BraCeR: Reconstruction of B-cell receptor sequences and clonality inference from single-cell RNA-sequencing

bioinformatics more details view paper
  • Downloaded 1,256 times
  • Download rankings, all-time:
    • Site-wide: 5,591 out of 70,230
    • In bioinformatics: 1,064 out of 6,887
  • Year to date:
    • Site-wide: 20,791 out of 70,230
  • Since beginning of last month:
    • Site-wide: 10,447 out of 70,230

The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation

cell biology more details view paper
  • Downloaded 1,172 times
  • Download rankings, all-time:
    • Site-wide: 6,310 out of 70,230
    • In cell biology: 195 out of 3,429
  • Year to date:
    • Site-wide: 33,832 out of 70,230
  • Since beginning of last month:
    • Site-wide: 13,983 out of 70,230

Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging

immunology more details view paper
  • Downloaded 1,001 times
  • Download rankings, all-time:
    • Site-wide: 8,158 out of 70,230
    • In immunology: 136 out of 1,805
  • Year to date:
    • Site-wide: 18,233 out of 70,230
  • Since beginning of last month:
    • Site-wide: 7,141 out of 70,230

Comparative analysis of sequencing technologies platforms for single-cell transcriptomics

genomics more details view paper
  • Downloaded 937 times
  • Download rankings, all-time:
    • Site-wide: 9,114 out of 70,230
    • In genomics: 1,393 out of 4,700
  • Year to date:
    • Site-wide: 39,345 out of 70,230
  • Since beginning of last month:
    • Site-wide: 43,841 out of 70,230

Distinct microbial and immune niches of the human colon

immunology more details view paper
  • Downloaded 855 times
  • Download rankings, all-time:
    • Site-wide: 10,503 out of 70,230
    • In immunology: 183 out of 1,805
  • Year to date:
    • Site-wide: 650 out of 70,230
  • Since beginning of last month:
    • Site-wide: 53 out of 70,230

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immunity

immunology more details view paper
  • Downloaded 845 times
  • Download rankings, all-time:
    • Site-wide: 10,708 out of 70,230
    • In immunology: 185 out of 1,805
  • Year to date:
    • Site-wide: 30,239 out of 70,230
  • Since beginning of last month:
    • Site-wide: 20,307 out of 70,230

Tumors induce de novo steroid biosynthesis in T cells to evade immunity

immunology more details view paper
  • Downloaded 604 times
  • Download rankings, all-time:
    • Site-wide: 17,434 out of 70,230
    • In immunology: 322 out of 1,805
  • Year to date:
    • Site-wide: 9,689 out of 70,230
  • Since beginning of last month:
    • Site-wide: 7,911 out of 70,230

Cotranslational assembly imposes evolutionary constraints on homomeric proteins

cell biology more details view paper
  • Downloaded 594 times
  • Download rankings, all-time:
    • Site-wide: 17,848 out of 70,230
    • In cell biology: 751 out of 3,429
  • Year to date:
    • Site-wide: 25,903 out of 70,230
  • Since beginning of last month:
    • Site-wide: 54,143 out of 70,230

Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression

genomics more details view paper
  • Downloaded 556 times
  • Download rankings, all-time:
    • Site-wide: 19,539 out of 70,230
    • In genomics: 2,309 out of 4,700
  • Year to date:
    • Site-wide: 38,734 out of 70,230
  • Since beginning of last month:
    • Site-wide: 45,451 out of 70,230

Rora regulates activated T helper cells during inflammation

immunology more details view paper
  • Downloaded 502 times
  • Download rankings, all-time:
    • Site-wide: 22,259 out of 70,230
    • In immunology: 424 out of 1,805
  • Year to date:
    • Site-wide: 21,223 out of 70,230
  • Since beginning of last month:
    • Site-wide: 21,681 out of 70,230

CLICK-enabled analogues reveal pregnenolone interactomes in cancer and immune cells

biochemistry more details view paper
  • Downloaded 180 times
  • Download rankings, all-time:
    • Site-wide: 54,097 out of 70,230
    • In biochemistry: 1,562 out of 2,105
  • Year to date:
    • Site-wide: 26,675 out of 70,230
  • Since beginning of last month:
    • Site-wide: 41,538 out of 70,230

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News