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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,719 bioRxiv papers from 278,291 authors.

Author: Andrew E Jaffe

Rankings

  • All-time downloads: 48,091 (rank: 280 out of 278,291)
  • Categories:
    • bioinformatics: 24,192 (rank: 66 out of 24,399)
    • cell biology: 306 (rank: 10,784 (tie) out of 18,419)
    • developmental biology: 896 (rank: 1,574 (tie) out of 10,310)
    • genetics: 758 (rank: 11,676 (tie) out of 27,714)
    • genomics: 13,792 (rank: 586 out of 31,942)
    • immunology: 298 (rank: 6,206 (tie) out of 12,535)
    • neuroscience: 7,849 (rank: 543 out of 45,890)

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Preprints

Molecularly-Defined Hippocampal Inputs Regulate Population Dynamics in the Prelimbic Cortex to Suppress Context Fear Memory Recall

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No bioRxiv download data for this paper yet.

Flexible analysis of transcriptome assemblies with Ballgown

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  • Downloaded 13,332 times
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    • Site-wide: 59 out of 62,719
    • In bioinformatics: 9 out of 6,243
  • Year to date:
    • Site-wide: 2,001 out of 62,719
  • Since beginning of last month:
    • Site-wide: 5,037 out of 62,719

recount: A large-scale resource of analysis-ready RNA-seq expression data

genomics more details view paper
  • Downloaded 3,534 times
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    • Site-wide: 798 out of 62,719
    • In genomics: 206 out of 4,312
  • Year to date:
    • Site-wide: 7,276 out of 62,719
  • Since beginning of last month:
    • Site-wide: 5,560 out of 62,719

Rail-RNA: Scalable analysis of RNA-seq splicing and coverage

bioinformatics more details view paper
  • Downloaded 3,224 times
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    • Site-wide: 939 out of 62,719
    • In bioinformatics: 188 out of 6,243
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    • Site-wide: 30,912 out of 62,719
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    • Site-wide: 37,592 out of 62,719

Human splicing diversity across the Sequence Read Archive

genomics more details view paper
  • Downloaded 2,248 times
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    • In genomics: 400 out of 4,312
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    • Site-wide: 24,661 out of 62,719

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,173 times
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    • Site-wide: 1,921 out of 62,719
    • In bioinformatics: 393 out of 6,243
  • Year to date:
    • Site-wide: 37,633 out of 62,719
  • Since beginning of last month:
    • Site-wide: 55,990 out of 62,719

Polyester: simulating RNA-seq datasets with differential transcript expression

bioinformatics more details view paper
  • Downloaded 2,086 times
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    • In bioinformatics: 430 out of 6,243
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    • Site-wide: 21,770 out of 62,719
  • Since beginning of last month:
    • Site-wide: 20,510 out of 62,719

Developmental And Genetic Regulation Of The Human Cortex Transcriptome In Schizophrenia

neuroscience more details view paper
  • Downloaded 2,066 times
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    • In neuroscience: 301 out of 11,193
  • Year to date:
    • Site-wide: 16,068 out of 62,719
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    • Site-wide: 17,695 out of 62,719

A Bayesian Framework for Multiple Trait Colocalization from Summary Association Statistics

genomics more details view paper
  • Downloaded 2,018 times
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    • Site-wide: 2,204 out of 62,719
    • In genomics: 465 out of 4,312
  • Year to date:
    • Site-wide: 6,659 out of 62,719
  • Since beginning of last month:
    • Site-wide: 16,738 out of 62,719

Addressing confounding artifacts in reconstruction of gene co-expression networks

genomics more details view paper
  • Downloaded 1,992 times
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    • Site-wide: 2,259 out of 62,719
    • In genomics: 475 out of 4,312
  • Year to date:
    • Site-wide: 4,750 out of 62,719
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    • Site-wide: None out of 62,719

A framework for RNA quality correction in differential expression analysis

bioinformatics more details view paper
  • Downloaded 1,529 times
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    • Site-wide: 3,517 out of 62,719
    • In bioinformatics: 710 out of 6,243
  • Year to date:
    • Site-wide: 37,786 out of 62,719
  • Since beginning of last month:
    • Site-wide: 42,148 out of 62,719

Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods

genomics more details view paper
  • Downloaded 1,137 times
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    • Site-wide: 5,740 out of 62,719
    • In genomics: 964 out of 4,312
  • Year to date:
    • Site-wide: 1,614 out of 62,719
  • Since beginning of last month:
    • Site-wide: 3,940 out of 62,719

Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs

genomics more details view paper
  • Downloaded 1,080 times
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    • Site-wide: 6,258 out of 62,719
    • In genomics: 1,039 out of 4,312
  • Year to date:
    • Site-wide: 3,113 out of 62,719
  • Since beginning of last month:
    • Site-wide: 3,981 out of 62,719

Defects of myelination are common pathophysiology in syndromic and idiopathic autism spectrum disorders

neuroscience more details view paper
  • Downloaded 904 times
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    • Site-wide: 8,322 out of 62,719
    • In neuroscience: 1,295 out of 11,193
  • Year to date:
    • Site-wide: 22,814 out of 62,719
  • Since beginning of last month:
    • Site-wide: 30,367 out of 62,719

The methylome of the human frontal cortex across development

developmental biology more details view paper
  • Downloaded 896 times
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    • Site-wide: 8,440 out of 62,719
    • In developmental biology: 187 out of 1,870
  • Year to date:
    • Site-wide: 46,499 out of 62,719
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    • Site-wide: 50,892 out of 62,719

Characterizing the nuclear and cytoplasmic transcriptomes in developing and mature human cortex uncovers new insight into psychiatric disease gene regulation

neuroscience more details view paper
  • Downloaded 817 times
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    • Site-wide: 9,715 out of 62,719
    • In neuroscience: 1,526 out of 11,193
  • Year to date:
    • Site-wide: 2,084 out of 62,719
  • Since beginning of last month:
    • Site-wide: 5,887 out of 62,719

Placental gene expression mediates the interaction between obstetrical history and genetic risk for schizophrenia

genetics more details view paper
  • Downloaded 758 times
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    • Site-wide: 10,863 out of 62,719
    • In genetics: 781 out of 3,561
  • Year to date:
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    • Site-wide: 51,762 out of 62,719

Correcting For Cell-Type Heterogeneity In Epigenome-Wide Association Studies: Premature Analyses And Conclusions

bioinformatics more details view paper
  • Downloaded 707 times
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    • Site-wide: 11,985 out of 62,719
    • In bioinformatics: 1,991 out of 6,243
  • Year to date:
    • Site-wide: 49,462 out of 62,719
  • Since beginning of last month:
    • Site-wide: 54,714 out of 62,719

recount-brain: a curated repository of human brain RNA-seq datasets metadata

genomics more details view paper
  • Downloaded 664 times
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    • Site-wide: 13,148 out of 62,719
    • In genomics: 1,777 out of 4,312
  • Year to date:
    • Site-wide: 3,007 out of 62,719
  • Since beginning of last month:
    • Site-wide: 3,971 out of 62,719

Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia

neuroscience more details view paper
  • Downloaded 623 times
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    • Site-wide: 14,302 out of 62,719
    • In neuroscience: 2,330 out of 11,193
  • Year to date:
    • Site-wide: 8,124 out of 62,719
  • Since beginning of last month:
    • Site-wide: 15,634 out of 62,719

Recounting the FANTOM Cage Associated Transcriptome

genomics more details view paper
  • Downloaded 588 times
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    • Site-wide: 15,540 out of 62,719
    • In genomics: 1,969 out of 4,312
  • Year to date:
    • Site-wide: 3,722 out of 62,719
  • Since beginning of last month:
    • Site-wide: 7,492 out of 62,719

Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation

neuroscience more details view paper
  • Downloaded 580 times
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    • Site-wide: 15,822 out of 62,719
    • In neuroscience: 2,607 out of 11,193
  • Year to date:
    • Site-wide: 8,668 out of 62,719
  • Since beginning of last month:
    • Site-wide: 10,609 out of 62,719

Identification and prioritization of gene sets associated with schizophrenia risk by co-expression network analysis in human brain

neuroscience more details view paper
  • Downloaded 546 times
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    • Site-wide: 17,160 out of 62,719
    • In neuroscience: 2,833 out of 11,193
  • Year to date:
    • Site-wide: 27,990 out of 62,719
  • Since beginning of last month:
    • Site-wide: 40,112 out of 62,719

Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer's disease

genomics more details view paper
  • Downloaded 531 times
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    • Site-wide: 17,740 out of 62,719
    • In genomics: 2,151 out of 4,312
  • Year to date:
    • Site-wide: 8,989 out of 62,719
  • Since beginning of last month:
    • Site-wide: 22,923 out of 62,719

dotdotdot: an automated approach to quantify multiplex single molecule fluorescent in situ hybridization (smFISH) images in complex tissues

neuroscience more details view paper
  • Downloaded 494 times
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    • Site-wide: 19,499 out of 62,719
    • In neuroscience: 3,249 out of 11,193
  • Year to date:
    • Site-wide: 4,997 out of 62,719
  • Since beginning of last month:
    • Site-wide: 182 out of 62,719

BDNF-TrkB signaling in oxytocin neurons contributes to maternal behavior

neuroscience more details view paper
  • Downloaded 488 times
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    • Site-wide: 19,720 out of 62,719
    • In neuroscience: 3,302 out of 11,193
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    • Site-wide: 32,015 out of 62,719
  • Since beginning of last month:
    • Site-wide: 36,142 out of 62,719

Prefrontal co-expression of schizophrenia risk genes is associated with treatment response in patients

neuroscience more details view paper
  • Downloaded 466 times
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    • Site-wide: 20,867 out of 62,719
    • In neuroscience: 3,504 out of 11,193
  • Year to date:
    • Site-wide: 16,207 out of 62,719
  • Since beginning of last month:
    • Site-wide: 7,652 out of 62,719

regionReport: Interactive reports for region-based analyses

bioinformatics more details view paper
  • Downloaded 429 times
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    • Site-wide: 22,915 out of 62,719
    • In bioinformatics: 3,258 out of 6,243
  • Year to date:
    • Site-wide: 60,150 out of 62,719
  • Since beginning of last month:
    • Site-wide: 57,476 out of 62,719

Incomplete annotation of disease-associated genes is limiting our understanding of Mendelian and complex neurogenetic disorders

bioinformatics more details view paper
  • Downloaded 391 times
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    • Site-wide: 25,439 out of 62,719
    • In bioinformatics: 3,498 out of 6,243
  • Year to date:
    • Site-wide: 9,960 out of 62,719
  • Since beginning of last month:
    • Site-wide: 16,225 out of 62,719

Integrating brain methylome with GWAS for psychiatric risk gene discovery

bioinformatics more details view paper
  • Downloaded 321 times
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    • Site-wide: 30,948 out of 62,719
    • In bioinformatics: 3,994 out of 6,243
  • Year to date:
    • Site-wide: 25,019 out of 62,719
  • Since beginning of last month:
    • Site-wide: 30,381 out of 62,719

Strong Components of Epigenetic Memory in Cultured Human Fibroblasts Related to Site of Origin and Donor Age

cell biology more details view paper
  • Downloaded 306 times
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    • Site-wide: 32,309 out of 62,719
    • In cell biology: 1,525 out of 2,987
  • Year to date:
    • Site-wide: 58,114 out of 62,719
  • Since beginning of last month:
    • Site-wide: 57,187 out of 62,719

Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome

neuroscience more details view paper
  • Downloaded 303 times
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    • Site-wide: 32,594 out of 62,719
    • In neuroscience: 5,610 out of 11,193
  • Year to date:
    • Site-wide: 42,044 out of 62,719
  • Since beginning of last month:
    • Site-wide: 37,020 out of 62,719

Cell type-specific genetic regulation of expression in the granule cell layer of the human dentate gyrus

neuroscience more details view paper
  • Downloaded 302 times
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    • Site-wide: 32,701 out of 62,719
    • In neuroscience: 5,627 out of 11,193
  • Year to date:
    • Site-wide: 11,179 out of 62,719
  • Since beginning of last month:
    • Site-wide: 9,101 out of 62,719

Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses

immunology more details view paper
  • Downloaded 298 times
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    • Site-wide: 32,987 out of 62,719
    • In immunology: 645 out of 1,562
  • Year to date:
    • Site-wide: 38,185 out of 62,719
  • Since beginning of last month:
    • Site-wide: 30,004 out of 62,719

Association of a lincRNA postmortem with suicide by violent means and in vivo with aggressive phenotypes

neuroscience more details view paper
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    • Site-wide: 42,346 out of 62,719
    • In neuroscience: 7,395 out of 11,193
  • Year to date:
    • Site-wide: 50,285 out of 62,719
  • Since beginning of last month:
    • Site-wide: 41,402 out of 62,719

Genome-wide DNA methylation differences in nucleus accumbens of smokers vs. nonsmokers

neuroscience more details view paper
  • Downloaded 47 times
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    • Site-wide: 60,802 out of 62,719
    • In neuroscience: 10,782 out of 11,193
  • Year to date:
    • Site-wide: 58,493 out of 62,719
  • Since beginning of last month:
    • Site-wide: 9,248 out of 62,719

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