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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,042 bioRxiv papers from 295,108 authors.

Author: Andrew E Jaffe

Rankings

  • All-time downloads: 50,221 (rank: 286 out of 295,009)
  • Categories:
    • bioinformatics: 24,562 (rank: 69 out of 25,687)
    • cell biology: 310 (rank: 11,710 (tie) out of 19,912)
    • developmental biology: 902 (rank: 1,722 (tie) out of 11,126)
    • genetics: 780 (rank: 12,250 (tie) out of 29,440)
    • genomics: 14,310 (rank: 619 out of 33,595)
    • immunology: 311 (rank: 6,937 (tie) out of 13,873)
    • neuroscience: 9,046 (rank: 474 out of 49,435)

Downloads per author, site-wide

Preprints

Flexible analysis of transcriptome assemblies with Ballgown

bioinformatics more details view paper
  • Downloaded 13,493 times
  • Download rankings, all-time:
    • Site-wide: 65 out of 67,027
    • In bioinformatics: 10 out of 6,609
  • Year to date:
    • Site-wide: 1,914 out of 67,027
  • Since beginning of last month:
    • Site-wide: 3,240 out of 67,027

recount: A large-scale resource of analysis-ready RNA-seq expression data

genomics more details view paper
  • Downloaded 3,633 times
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    • Site-wide: 820 out of 67,027
    • In genomics: 211 out of 4,553
  • Year to date:
    • Site-wide: 6,500 out of 67,027
  • Since beginning of last month:
    • Site-wide: 6,210 out of 67,027

Rail-RNA: Scalable analysis of RNA-seq splicing and coverage

bioinformatics more details view paper
  • Downloaded 3,255 times
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    • Site-wide: 1,002 out of 67,027
    • In bioinformatics: 202 out of 6,609
  • Year to date:
    • Site-wide: 30,964 out of 67,027
  • Since beginning of last month:
    • Site-wide: 22,718 out of 67,027

Human splicing diversity across the Sequence Read Archive

genomics more details view paper
  • Downloaded 2,272 times
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    • Site-wide: 1,938 out of 67,027
    • In genomics: 424 out of 4,553
  • Year to date:
    • Site-wide: 41,137 out of 67,027
  • Since beginning of last month:
    • Site-wide: 27,145 out of 67,027

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,202 times
  • Download rankings, all-time:
    • Site-wide: 2,054 out of 67,027
    • In bioinformatics: 416 out of 6,609
  • Year to date:
    • Site-wide: 37,356 out of 67,027
  • Since beginning of last month:
    • Site-wide: 38,205 out of 67,027

Polyester: simulating RNA-seq datasets with differential transcript expression

bioinformatics more details view paper
  • Downloaded 2,121 times
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    • Site-wide: 2,194 out of 67,027
    • In bioinformatics: 451 out of 6,609
  • Year to date:
    • Site-wide: 22,084 out of 67,027
  • Since beginning of last month:
    • Site-wide: 17,958 out of 67,027

Developmental And Genetic Regulation Of The Human Cortex Transcriptome In Schizophrenia

neuroscience more details view paper
  • Downloaded 2,111 times
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    • Site-wide: 2,215 out of 67,027
    • In neuroscience: 327 out of 12,010
  • Year to date:
    • Site-wide: 15,876 out of 67,027
  • Since beginning of last month:
    • Site-wide: 11,561 out of 67,027

A Bayesian Framework for Multiple Trait Colocalization from Summary Association Statistics

genomics more details view paper
  • Downloaded 2,063 times
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    • Site-wide: 2,302 out of 67,027
    • In genomics: 485 out of 4,553
  • Year to date:
    • Site-wide: 7,286 out of 67,027
  • Since beginning of last month:
    • Site-wide: 32,016 out of 67,027

Addressing confounding artifacts in reconstruction of gene co-expression networks

genomics more details view paper
  • Downloaded 2,050 times
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    • Site-wide: 2,327 out of 67,027
    • In genomics: 489 out of 4,553
  • Year to date:
    • Site-wide: 5,129 out of 67,027
  • Since beginning of last month:
    • Site-wide: 39,379 out of 67,027

A framework for RNA quality correction in differential expression analysis

bioinformatics more details view paper
  • Downloaded 1,559 times
  • Download rankings, all-time:
    • Site-wide: 3,684 out of 67,027
    • In bioinformatics: 740 out of 6,609
  • Year to date:
    • Site-wide: 37,097 out of 67,027
  • Since beginning of last month:
    • Site-wide: 16,036 out of 67,027

Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods

genomics more details view paper
  • Downloaded 1,209 times
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    • Site-wide: 5,632 out of 67,027
    • In genomics: 958 out of 4,553
  • Year to date:
    • Site-wide: 1,854 out of 67,027
  • Since beginning of last month:
    • Site-wide: 10,024 out of 67,027

Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs

genomics more details view paper
  • Downloaded 1,139 times
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    • Site-wide: 6,221 out of 67,027
    • In genomics: 1,031 out of 4,553
  • Year to date:
    • Site-wide: 3,509 out of 67,027
  • Since beginning of last month:
    • Site-wide: 10,647 out of 67,027

Characterizing the nuclear and cytoplasmic transcriptomes in developing and mature human cortex uncovers new insight into psychiatric disease gene regulation

neuroscience more details view paper
  • Downloaded 1,009 times
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    • Site-wide: 7,570 out of 67,027
    • In neuroscience: 1,193 out of 12,010
  • Year to date:
    • Site-wide: 1,879 out of 67,027
  • Since beginning of last month:
    • Site-wide: 2,635 out of 67,027

Defects of myelination are common pathophysiology in syndromic and idiopathic autism spectrum disorders

neuroscience more details view paper
  • Downloaded 942 times
  • Download rankings, all-time:
    • Site-wide: 8,493 out of 67,027
    • In neuroscience: 1,347 out of 12,010
  • Year to date:
    • Site-wide: 22,667 out of 67,027
  • Since beginning of last month:
    • Site-wide: 16,625 out of 67,027

The methylome of the human frontal cortex across development

developmental biology more details view paper
  • Downloaded 902 times
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    • Site-wide: 9,075 out of 67,027
    • In developmental biology: 198 out of 1,987
  • Year to date:
    • Site-wide: 52,547 out of 67,027
  • Since beginning of last month:
    • Site-wide: 59,415 out of 67,027

Placental gene expression mediates the interaction between obstetrical history and genetic risk for schizophrenia

genetics more details view paper
  • Downloaded 780 times
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    • Site-wide: 11,373 out of 67,027
    • In genetics: 811 out of 3,772
  • Year to date:
    • Site-wide: 47,453 out of 67,027
  • Since beginning of last month:
    • Site-wide: 36,849 out of 67,027

recount-brain: a curated repository of human brain RNA-seq datasets metadata

genomics more details view paper
  • Downloaded 753 times
  • Download rankings, all-time:
    • Site-wide: 11,939 out of 67,027
    • In genomics: 1,689 out of 4,553
  • Year to date:
    • Site-wide: 3,147 out of 67,027
  • Since beginning of last month:
    • Site-wide: 7,214 out of 67,027

dotdotdot: an automated approach to quantify multiplex single molecule fluorescent in situ hybridization (smFISH) images in complex tissues

neuroscience more details view paper
  • Downloaded 723 times
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    • Site-wide: 12,682 out of 67,027
    • In neuroscience: 2,060 out of 12,010
  • Year to date:
    • Site-wide: 3,393 out of 67,027
  • Since beginning of last month:
    • Site-wide: 1,997 out of 67,027

Correcting For Cell-Type Heterogeneity In Epigenome-Wide Association Studies: Premature Analyses And Conclusions

bioinformatics more details view paper
  • Downloaded 716 times
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    • Site-wide: 12,888 out of 67,027
    • In bioinformatics: 2,104 out of 6,609
  • Year to date:
    • Site-wide: 54,685 out of 67,027
  • Since beginning of last month:
    • Site-wide: 58,120 out of 67,027

Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia

neuroscience more details view paper
  • Downloaded 683 times
  • Download rankings, all-time:
    • Site-wide: 13,765 out of 67,027
    • In neuroscience: 2,251 out of 12,010
  • Year to date:
    • Site-wide: 8,213 out of 67,027
  • Since beginning of last month:
    • Site-wide: 9,561 out of 67,027

Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation

neuroscience more details view paper
  • Downloaded 636 times
  • Download rankings, all-time:
    • Site-wide: 15,226 out of 67,027
    • In neuroscience: 2,538 out of 12,010
  • Year to date:
    • Site-wide: 8,822 out of 67,027
  • Since beginning of last month:
    • Site-wide: 14,139 out of 67,027

Recounting the FANTOM Cage Associated Transcriptome

genomics more details view paper
  • Downloaded 634 times
  • Download rankings, all-time:
    • Site-wide: 15,269 out of 67,027
    • In genomics: 1,976 out of 4,553
  • Year to date:
    • Site-wide: 4,226 out of 67,027
  • Since beginning of last month:
    • Site-wide: 12,940 out of 67,027

Identification and prioritization of gene sets associated with schizophrenia risk by co-expression network analysis in human brain

neuroscience more details view paper
  • Downloaded 586 times
  • Download rankings, all-time:
    • Site-wide: 17,038 out of 67,027
    • In neuroscience: 2,860 out of 12,010
  • Year to date:
    • Site-wide: 26,749 out of 67,027
  • Since beginning of last month:
    • Site-wide: 14,772 out of 67,027

Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer's disease

genomics more details view paper
  • Downloaded 557 times
  • Download rankings, all-time:
    • Site-wide: 18,267 out of 67,027
    • In genomics: 2,206 out of 4,553
  • Year to date:
    • Site-wide: 10,340 out of 67,027
  • Since beginning of last month:
    • Site-wide: 32,543 out of 67,027

Prefrontal co-expression of schizophrenia risk genes is associated with treatment response in patients

neuroscience more details view paper
  • Downloaded 511 times
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    • Site-wide: 20,384 out of 67,027
    • In neuroscience: 3,430 out of 12,010
  • Year to date:
    • Site-wide: 15,989 out of 67,027
  • Since beginning of last month:
    • Site-wide: 17,702 out of 67,027

BDNF-TrkB signaling in oxytocin neurons contributes to maternal behavior

neuroscience more details view paper
  • Downloaded 502 times
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    • Site-wide: 20,810 out of 67,027
    • In neuroscience: 3,518 out of 12,010
  • Year to date:
    • Site-wide: 35,565 out of 67,027
  • Since beginning of last month:
    • Site-wide: 32,770 out of 67,027

regionReport: Interactive reports for region-based analyses

bioinformatics more details view paper
  • Downloaded 460 times
  • Download rankings, all-time:
    • Site-wide: 23,151 out of 67,027
    • In bioinformatics: 3,287 out of 6,609
  • Year to date:
    • Site-wide: 58,572 out of 67,027
  • Since beginning of last month:
    • Site-wide: 11,495 out of 67,027

Incomplete annotation of disease-associated genes is limiting our understanding of Mendelian and complex neurogenetic disorders

bioinformatics more details view paper
  • Downloaded 414 times
  • Download rankings, all-time:
    • Site-wide: 26,120 out of 67,027
    • In bioinformatics: 3,573 out of 6,609
  • Year to date:
    • Site-wide: 11,544 out of 67,027
  • Since beginning of last month:
    • Site-wide: 29,605 out of 67,027

Integrating brain methylome with GWAS for psychiatric risk gene discovery

bioinformatics more details view paper
  • Downloaded 342 times
  • Download rankings, all-time:
    • Site-wide: 31,926 out of 67,027
    • In bioinformatics: 4,069 out of 6,609
  • Year to date:
    • Site-wide: 27,221 out of 67,027
  • Since beginning of last month:
    • Site-wide: 29,609 out of 67,027

Cell type-specific genetic regulation of expression in the granule cell layer of the human dentate gyrus

neuroscience more details view paper
  • Downloaded 330 times
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    • Site-wide: 32,971 out of 67,027
    • In neuroscience: 5,726 out of 12,010
  • Year to date:
    • Site-wide: 12,494 out of 67,027
  • Since beginning of last month:
    • Site-wide: 22,961 out of 67,027

Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome

neuroscience more details view paper
  • Downloaded 318 times
  • Download rankings, all-time:
    • Site-wide: 34,247 out of 67,027
    • In neuroscience: 5,959 out of 12,010
  • Year to date:
    • Site-wide: 45,334 out of 67,027
  • Since beginning of last month:
    • Site-wide: 49,074 out of 67,027

Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses

immunology more details view paper
  • Downloaded 311 times
  • Download rankings, all-time:
    • Site-wide: 34,875 out of 67,027
    • In immunology: 713 out of 1,706
  • Year to date:
    • Site-wide: 42,151 out of 67,027
  • Since beginning of last month:
    • Site-wide: 44,951 out of 67,027

Strong Components of Epigenetic Memory in Cultured Human Fibroblasts Related to Site of Origin and Donor Age

cell biology more details view paper
  • Downloaded 310 times
  • Download rankings, all-time:
    • Site-wide: 35,012 out of 67,027
    • In cell biology: 1,661 out of 3,246
  • Year to date:
    • Site-wide: 63,840 out of 67,027
  • Since beginning of last month:
    • Site-wide: 64,574 out of 67,027

Molecularly-Defined Hippocampal Inputs Regulate Population Dynamics in the Prelimbic Cortex to Suppress Context Fear Memory Recall

neuroscience more details view paper
  • Downloaded 283 times
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    • Site-wide: 37,698 out of 67,027
    • In neuroscience: 6,595 out of 12,010
  • Year to date:
    • Site-wide: 15,670 out of 67,027
  • Since beginning of last month:
    • Site-wide: 11,779 out of 67,027

Association of a lincRNA postmortem with suicide by violent means and in vivo with aggressive phenotypes

neuroscience more details view paper
  • Downloaded 232 times
  • Download rankings, all-time:
    • Site-wide: 43,815 out of 67,027
    • In neuroscience: 7,743 out of 12,010
  • Year to date:
    • Site-wide: 51,690 out of 67,027
  • Since beginning of last month:
    • Site-wide: 30,615 out of 67,027

Characterizing the dynamic and functional DNA methylation landscape in the developing human cortex

neuroscience more details view paper
  • Downloaded 97 times
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    • Site-wide: 62,007 out of 67,027
    • In neuroscience: 11,073 out of 12,010
  • Year to date:
    • Site-wide: 49,213 out of 67,027
  • Since beginning of last month:
    • Site-wide: 4,162 out of 67,027

Genome-wide DNA methylation differences in nucleus accumbens of smokers vs. nonsmokers

neuroscience more details view paper
  • Downloaded 83 times
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    • Site-wide: 63,452 out of 67,027
    • In neuroscience: 11,310 out of 12,010
  • Year to date:
    • Site-wide: 54,054 out of 67,027
  • Since beginning of last month:
    • Site-wide: 15,297 out of 67,027

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