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Author: Leonardo Collado-Torres

Rankings

  • All-time downloads: 34,689 (rank: 5,322 (tie) )
  • Categories:
    • bioinformatics: 8,413 (rank: 1,234 )
    • genomics: 12,952 (rank: 1,468 )
    • immunology: 472 (rank: 21,808 (tie) )
    • neuroscience: 12,852 (rank: 984 )

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Preprints

Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex

neuroscience more details view paper
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    • Site-wide: 1,358
    • In neuroscience: 57
  • Year to date:
    • Site-wide: 1,350
  • Since beginning of last month:
    • Site-wide: 1,705

recount: A large-scale resource of analysis-ready RNA-seq expression data

genomics more details view paper
  • Downloaded 4,400 times
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    • Site-wide: 2,858
    • In genomics: 292
  • Year to date:
    • Site-wide: 21,112
  • Since beginning of last month:
    • Site-wide: None

Flexible expressed region analysis for RNA-seq with derfinder

bioinformatics more details view paper
  • Downloaded 2,430 times
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    • Site-wide: 6,667
    • In bioinformatics: 715
  • Year to date:
    • Site-wide: 89,697
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    • Site-wide: None

Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods

genomics more details view paper
  • Downloaded 1,811 times
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    • Site-wide: 10,265
    • In genomics: 1,052
  • Year to date:
    • Site-wide: 55,980
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    • Site-wide: 98,058

Improving the value of public RNA-seq expression data by phenotype prediction

bioinformatics more details view paper
  • Downloaded 1,733 times
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    • Site-wide: 10,960
    • In bioinformatics: 1,265
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    • Site-wide: 77,059
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    • Site-wide: 71,649

Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs

genomics more details view paper
  • Downloaded 1,726 times
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    • Site-wide: 11,016
    • In genomics: 1,135
  • Year to date:
    • Site-wide: 39,179
  • Since beginning of last month:
    • Site-wide: 11,232

recount-brain: a curated repository of human brain RNA-seq datasets metadata

genomics more details view paper
  • Downloaded 1,270 times
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    • Site-wide: 17,403
    • In genomics: 1,699
  • Year to date:
    • Site-wide: 32,922
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Single-nucleus transcriptome analysis reveals cell type-specific molecular signatures across reward circuitry in the human brain

neuroscience more details view paper
  • Downloaded 1,261 times
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    • Site-wide: 17,584
    • In neuroscience: 2,086
  • Year to date:
    • Site-wide: 4,590
  • Since beginning of last month:
    • Site-wide: 8,257

Recounting the FANTOM Cage Associated Transcriptome

genomics more details view paper
  • Downloaded 1,247 times
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    • Site-wide: 17,887
    • In genomics: 1,735
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    • Site-wide: 34,482
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recount3: summaries and queries for large-scale RNA-seq expression and splicing

genomics more details view paper
  • Downloaded 1,167 times
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    • Site-wide: 19,743
    • In genomics: 1,913
  • Year to date:
    • Site-wide: 2,650
  • Since beginning of last month:
    • Site-wide: 1,536

SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor

bioinformatics more details view paper
  • Downloaded 1,081 times
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    • Site-wide: 22,093
    • In bioinformatics: 2,520
  • Year to date:
    • Site-wide: 2,977
  • Since beginning of last month:
    • Site-wide: 49,666

SynGAP splice isoforms differentially regulate synaptic plasticity and dendritic development

neuroscience more details view paper
  • Downloaded 1,021 times
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    • Site-wide: 23,982
    • In neuroscience: 2,962
  • Year to date:
    • Site-wide: 44,206
  • Since beginning of last month:
    • Site-wide: 43,382

Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer's disease

genomics more details view paper
  • Downloaded 1,016 times
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    • Site-wide: 24,161
    • In genomics: 2,273
  • Year to date:
    • Site-wide: 48,685
  • Since beginning of last month:
    • Site-wide: 106,415

Divergent neuronal DNA methylation patterns across human cortical development: Critical periods and a unique role of CpH methylation

neuroscience more details view paper
  • Downloaded 1,011 times
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    • Site-wide: 24,313
    • In neuroscience: 3,009
  • Year to date:
    • Site-wide: 102,229
  • Since beginning of last month:
    • Site-wide: 106,453

Regional heterogeneity in gene expression, regulation and coherence in hippocampus and dorsolateral prefrontal cortex across development and in schizophrenia

neuroscience more details view paper
  • Downloaded 967 times
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    • Site-wide: 26,039
    • In neuroscience: 3,277
  • Year to date:
    • Site-wide: 87,024
  • Since beginning of last month:
    • Site-wide: 71,575

Incomplete annotation of disease-associated genes is limiting our understanding of Mendelian and complex neurogenetic disorders

bioinformatics more details view paper
  • Downloaded 794 times
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    • Site-wide: 34,339
    • In bioinformatics: 3,760
  • Year to date:
    • Site-wide: 57,427
  • Since beginning of last month:
    • Site-wide: 27,219

regionReport: Interactive reports for region-based analyses

bioinformatics more details view paper
  • Downloaded 542 times
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    • Site-wide: 56,434
    • In bioinformatics: 5,656
  • Year to date:
    • Site-wide: 147,131
  • Since beginning of last month:
    • Site-wide: 64,879

Developmental effects of maternal smoking during pregnancy on the human frontal cortex transcriptome

neuroscience more details view paper
  • Downloaded 514 times
  • Download rankings, all-time:
    • Site-wide: 60,150
    • In neuroscience: 8,724
  • Year to date:
    • Site-wide: 118,614
  • Since beginning of last month:
    • Site-wide: None

Non-coding Class Switch Recombination-related transcription in human normal and pathological immune responses

immunology more details view paper
  • Downloaded 472 times
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    • Site-wide: 66,106
    • In immunology: 1,993
  • Year to date:
    • Site-wide: 130,121
  • Since beginning of last month:
    • Site-wide: 103,665

spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

bioinformatics more details view paper
  • Downloaded 460 times
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    • Site-wide: 67,938
    • In bioinformatics: 6,497
  • Year to date:
    • Site-wide: 10,321
  • Since beginning of last month:
    • Site-wide: 46,526

SPEAQeasy: a Scalable Pipeline for Expression Analysis and Quantification for R/Bioconductor-powered RNA-seq analyses

bioinformatics more details view paper
  • Downloaded 439 times
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    • Site-wide: 71,316
    • In bioinformatics: 6,725
  • Year to date:
    • Site-wide: 40,540
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    • Site-wide: 86,423

Electrophysiological measures from human iPSC-derived neurons are associated with schizophrenia clinical status and predict individual cognitive performance

neuroscience more details view paper
  • Downloaded 429 times
  • Download rankings, all-time:
    • Site-wide: 73,060
    • In neuroscience: 10,817
  • Year to date:
    • Site-wide: 11,384
  • Since beginning of last month:
    • Site-wide: 90,041

Megadepth: efficient coverage quantification for BigWigs and BAMs

bioinformatics more details view paper
  • Downloaded 390 times
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    • Site-wide: 80,081
    • In bioinformatics: 7,318
  • Year to date:
    • Site-wide: 31,495
  • Since beginning of last month:
    • Site-wide: 9,732

Widespread methylation quantitative trait loci and their role in schizophrenia risk

genomics more details view paper
  • Downloaded 315 times
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    • Site-wide: 95,670
    • In genomics: 5,882
  • Year to date:
    • Site-wide: 63,143
  • Since beginning of last month:
    • Site-wide: 85,393

Detection of pathogenic splicing events from RNA-sequencing data using dasper

bioinformatics more details view paper
  • Downloaded 302 times
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    • Site-wide: 98,806
    • In bioinformatics: 8,510
  • Year to date:
    • Site-wide: 18,895
  • Since beginning of last month:
    • Site-wide: 13,659

Programmatic access to bacterial regulatory networks with regutools

bioinformatics more details view paper
  • Downloaded 213 times
  • Download rankings, all-time:
    • Site-wide: 120,456
    • In bioinformatics: 9,789
  • Year to date:
    • Site-wide: 101,907
  • Since beginning of last month:
    • Site-wide: 31,645

VistoSeg: a MATLAB pipeline to process, analyze and visualize high resolution histology images for Visium spatial transcriptomics data

bioinformatics more details view paper
  • Downloaded 29 times
  • Download rankings, all-time:
    • Site-wide: 152,861
    • In bioinformatics: 11,516
  • Year to date:
    • Site-wide: 141,640
  • Since beginning of last month:
    • Site-wide: 13,201

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