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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 52,976 bioRxiv papers from 245,355 authors.

Author: John Marioni

  • ORCiD: http://orcid.org/0000-0001-9092-0852
  • Most recently observed institution: EMBL-EBI, Wellcome Genome Campus, Cancer Research UK Cambridge Institute University of Cambridge, UK

Rankings

  • All-time downloads: 36,504 (rank: 353 out of 245,355)
  • Categories:
    • bioinformatics: 15,133 (rank: 100 out of 21,701)
    • cell biology: 11,515 (rank: 46 (tie) out of 15,337)
    • developmental biology: 5,075 (rank: 24 out of 8,491)
    • evolutionary biology: 561 (rank: 5,331 (tie) out of 13,573)
    • genomics: 4,220 (rank: 2,673 out of 28,326)

Downloads per author, site-wide

Preprints

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,515 times
  • Download rankings, all-time:
    • Site-wide: 68 out of 52,976
    • In cell biology: 2 out of 2,499
  • Year to date:
    • Site-wide: 4,689 out of 52,976
  • Since beginning of last month:
    • Site-wide: 6,015 out of 52,976

Correcting batch effects in single-cell RNA sequencing data by matching mutual nearest neighbours.

bioinformatics more details view paper
  • Downloaded 4,680 times
  • Download rankings, all-time:
    • Site-wide: 373 out of 52,976
    • In bioinformatics: 76 out of 5,530
  • Year to date:
    • Site-wide: 4,056 out of 52,976
  • Since beginning of last month:
    • Site-wide: 9,246 out of 52,976

Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification

developmental biology more details view paper
  • Downloaded 3,892 times
  • Download rankings, all-time:
    • Site-wide: 548 out of 52,976
    • In developmental biology: 4 out of 1,549
  • Year to date:
    • Site-wide: 46 out of 52,976
  • Since beginning of last month:
    • Site-wide: 363 out of 52,976

RNA-seq gene profiling - a systematic empirical comparison

bioinformatics more details view paper
  • Downloaded 3,766 times
  • Download rankings, all-time:
    • Site-wide: 588 out of 52,976
    • In bioinformatics: 119 out of 5,530
  • Year to date:
    • Site-wide: 41,574 out of 52,976
  • Since beginning of last month:
    • Site-wide: 35,927 out of 52,976

iRAP - an integrated RNA-seq Analysis Pipeline

bioinformatics more details view paper
  • Downloaded 3,345 times
  • Download rankings, all-time:
    • Site-wide: 725 out of 52,976
    • In bioinformatics: 147 out of 5,530
  • Year to date:
    • Site-wide: 14,799 out of 52,976
  • Since beginning of last month:
    • Site-wide: 15,959 out of 52,976

Distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

bioinformatics more details view paper
  • Downloaded 2,675 times
  • Download rankings, all-time:
    • Site-wide: 1,095 out of 52,976
    • In bioinformatics: 231 out of 5,530
  • Year to date:
    • Site-wide: 719 out of 52,976
  • Since beginning of last month:
    • Site-wide: 3,620 out of 52,976

Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis

developmental biology more details view paper
  • Downloaded 1,183 times
  • Download rankings, all-time:
    • Site-wide: 4,386 out of 52,976
    • In developmental biology: 79 out of 1,549
  • Year to date:
    • Site-wide: 6,538 out of 52,976
  • Since beginning of last month:
    • Site-wide: 14,030 out of 52,976

Detection and removal of barcode swapping in single-cell RNA-seq data

genomics more details view paper
  • Downloaded 1,157 times
  • Download rankings, all-time:
    • Site-wide: 4,539 out of 52,976
    • In genomics: 810 out of 3,779
  • Year to date:
    • Site-wide: 17,007 out of 52,976
  • Since beginning of last month:
    • Site-wide: 10,065 out of 52,976

Single-cell RNA-seq of differentiating iPS cells reveals dynamic genetic effects on gene expression

genomics more details view paper
  • Downloaded 1,056 times
  • Download rankings, all-time:
    • Site-wide: 5,261 out of 52,976
    • In genomics: 907 out of 3,779
  • Year to date:
    • Site-wide: 580 out of 52,976
  • Since beginning of last month:
    • Site-wide: 70 out of 52,976

Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis

genomics more details view paper
  • Downloaded 1,042 times
  • Download rankings, all-time:
    • Site-wide: 5,377 out of 52,976
    • In genomics: 924 out of 3,779
  • Year to date:
    • Site-wide: 16,229 out of 52,976
  • Since beginning of last month:
    • Site-wide: 16,560 out of 52,976

Beyond comparisons of means: understanding changes in gene expression at the single-cell level

genomics more details view paper
  • Downloaded 965 times
  • Download rankings, all-time:
    • Site-wide: 6,084 out of 52,976
    • In genomics: 1,015 out of 3,779
  • Year to date:
    • Site-wide: 41,504 out of 52,976
  • Since beginning of last month:
    • Site-wide: 32,348 out of 52,976

Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 667 times
  • Download rankings, all-time:
    • Site-wide: 10,582 out of 52,976
    • In bioinformatics: 1,816 out of 5,530
  • Year to date:
    • Site-wide: 40,245 out of 52,976
  • Since beginning of last month:
    • Site-wide: 39,903 out of 52,976

Structure and evolutionary history of a large family of NLR proteins in the zebrafish

evolutionary biology more details view paper
  • Downloaded 561 times
  • Download rankings, all-time:
    • Site-wide: 13,295 out of 52,976
    • In evolutionary biology: 1,018 out of 3,694
  • Year to date:
    • Site-wide: 44,251 out of 52,976
  • Since beginning of last month:
    • Site-wide: 48,711 out of 52,976

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