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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,506 bioRxiv papers from 264,779 authors.

Author: John Marioni

Rankings

  • All-time downloads: 37,809 (rank: 366 out of 264,779)
  • Categories:
    • bioinformatics: 15,412 (rank: 112 out of 23,124)
    • cell biology: 11,609 (rank: 46 (tie) out of 16,783)
    • developmental biology: 5,484 (rank: 23 out of 9,402)
    • evolutionary biology: 581 (rank: 5,617 (tie) out of 14,389)
    • genomics: 4,723 (rank: 2,536 (tie) out of 30,243)

Downloads per author, site-wide

Preprints

Rora regulates activated T helper cells during inflammation

immunology more details view paper

No bioRxiv download data for this paper yet.

The Human Cell Atlas

cell biology more details view paper
  • Downloaded 11,609 times
  • Download rankings, all-time:
    • Site-wide: 73 out of 57,506
    • In cell biology: 2 out of 2,723
  • Year to date:
    • Site-wide: 4,857 out of 57,506
  • Since beginning of last month:
    • Site-wide: 5,869 out of 57,506

Correcting batch effects in single-cell RNA sequencing data by matching mutual nearest neighbours.

bioinformatics more details view paper
  • Downloaded 4,724 times
  • Download rankings, all-time:
    • Site-wide: 406 out of 57,506
    • In bioinformatics: 78 out of 5,863
  • Year to date:
    • Site-wide: 5,253 out of 57,506
  • Since beginning of last month:
    • Site-wide: 19,569 out of 57,506

Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification

developmental biology more details view paper
  • Downloaded 4,213 times
  • Download rankings, all-time:
    • Site-wide: 511 out of 57,506
    • In developmental biology: 2 out of 1,702
  • Year to date:
    • Site-wide: 65 out of 57,506
  • Since beginning of last month:
    • Site-wide: 833 out of 57,506

RNA-seq gene profiling - a systematic empirical comparison

bioinformatics more details view paper
  • Downloaded 3,807 times
  • Download rankings, all-time:
    • Site-wide: 636 out of 57,506
    • In bioinformatics: 125 out of 5,863
  • Year to date:
    • Site-wide: 37,853 out of 57,506
  • Since beginning of last month:
    • Site-wide: 19,281 out of 57,506

iRAP - an integrated RNA-seq Analysis Pipeline

bioinformatics more details view paper
  • Downloaded 3,374 times
  • Download rankings, all-time:
    • Site-wide: 802 out of 57,506
    • In bioinformatics: 158 out of 5,863
  • Year to date:
    • Site-wide: 17,930 out of 57,506
  • Since beginning of last month:
    • Site-wide: 25,281 out of 57,506

Distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

bioinformatics more details view paper
  • Downloaded 2,816 times
  • Download rankings, all-time:
    • Site-wide: 1,113 out of 57,506
    • In bioinformatics: 230 out of 5,863
  • Year to date:
    • Site-wide: 894 out of 57,506
  • Since beginning of last month:
    • Site-wide: 3,805 out of 57,506

Single-cell RNA-seq of differentiating iPS cells reveals dynamic genetic effects on gene expression

genomics more details view paper
  • Downloaded 1,367 times
  • Download rankings, all-time:
    • Site-wide: 3,892 out of 57,506
    • In genomics: 720 out of 4,027
  • Year to date:
    • Site-wide: 573 out of 57,506
  • Since beginning of last month:
    • Site-wide: 927 out of 57,506

Detection and removal of barcode swapping in single-cell RNA-seq data

genomics more details view paper
  • Downloaded 1,296 times
  • Download rankings, all-time:
    • Site-wide: 4,246 out of 57,506
    • In genomics: 772 out of 4,027
  • Year to date:
    • Site-wide: 9,819 out of 57,506
  • Since beginning of last month:
    • Site-wide: 8,675 out of 57,506

Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis

developmental biology more details view paper
  • Downloaded 1,271 times
  • Download rankings, all-time:
    • Site-wide: 4,371 out of 57,506
    • In developmental biology: 83 out of 1,702
  • Year to date:
    • Site-wide: 6,437 out of 57,506
  • Since beginning of last month:
    • Site-wide: 8,495 out of 57,506

Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis

genomics more details view paper
  • Downloaded 1,070 times
  • Download rankings, all-time:
    • Site-wide: 5,794 out of 57,506
    • In genomics: 978 out of 4,027
  • Year to date:
    • Site-wide: 19,498 out of 57,506
  • Since beginning of last month:
    • Site-wide: 23,442 out of 57,506

Beyond comparisons of means: understanding changes in gene expression at the single-cell level

genomics more details view paper
  • Downloaded 990 times
  • Download rankings, all-time:
    • Site-wide: 6,572 out of 57,506
    • In genomics: 1,083 out of 4,027
  • Year to date:
    • Site-wide: 43,838 out of 57,506
  • Since beginning of last month:
    • Site-wide: 29,876 out of 57,506

Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data

bioinformatics more details view paper
  • Downloaded 691 times
  • Download rankings, all-time:
    • Site-wide: 11,341 out of 57,506
    • In bioinformatics: 1,924 out of 5,863
  • Year to date:
    • Site-wide: 43,257 out of 57,506
  • Since beginning of last month:
    • Site-wide: 42,308 out of 57,506

Structure and evolutionary history of a large family of NLR proteins in the zebrafish

evolutionary biology more details view paper
  • Downloaded 581 times
  • Download rankings, all-time:
    • Site-wide: 14,389 out of 57,506
    • In evolutionary biology: 1,065 out of 3,940
  • Year to date:
    • Site-wide: 48,172 out of 57,506
  • Since beginning of last month:
    • Site-wide: 40,566 out of 57,506

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