Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,459 bioRxiv papers from 297,237 authors.

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Preprints

Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification

• Downloaded 5,258 times
• Download rankings, all-time:
  • Site-wide: 404 out of 67,459
  • In developmental biology: 5 out of 2,005
• Year to date:
  • Site-wide: 85 out of 67,459
• Since beginning of last month:
  • Site-wide: 332 out of 67,459

Correcting batch effects in single-cell RNA sequencing data by matching mutual nearest neighbours.

• Downloaded 4,819 times
• Download rankings, all-time:
  • Site-wide: 469 out of 67,459
  • In bioinformatics: 94 out of 6,644
• Year to date:
  • Site-wide: 6,776 out of 67,459
• Since beginning of last month:
  • Site-wide: 17,617 out of 67,459

RNA-seq gene profiling - a systematic empirical comparison

• Downloaded 3,838 times
• Download rankings, all-time:
  • Site-wide: 746 out of 67,459
  • In bioinformatics: 146 out of 6,644
• Year to date:
  • Site-wide: 45,503 out of 67,459
• Since beginning of last month:
  • Site-wide: 63,545 out of 67,459

Distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

• Downloaded 2,973 times
• Download rankings, all-time:
  • Site-wide: 1,203 out of 67,459
  • In bioinformatics: 239 out of 6,644
• Year to date:
  • Site-wide: 1,353 out of 67,459
• Since beginning of last month:
  • Site-wide: 10,931 out of 67,459

Single-cell RNA-seq of differentiating iPS cells reveals dynamic genetic effects on gene expression

• Downloaded 1,979 times
• Download rankings, all-time:
  • Site-wide: 2,490 out of 67,459
  • In genomics: 515 out of 4,579
• Year to date:
  • Site-wide: 549 out of 67,459
• Since beginning of last month:
  • Site-wide: 1,481 out of 67,459

Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis

• Downloaded 1,389 times
• Download rankings, all-time:
  • Site-wide: 4,539 out of 67,459
  • In developmental biology: 87 out of 2,005
• Year to date:
  • Site-wide: 7,350 out of 67,459
• Since beginning of last month:
  • Site-wide: 9,761 out of 67,459

Detection and removal of barcode swapping in single-cell RNA-seq data

• Downloaded 1,378 times
• Download rankings, all-time:
  • Site-wide: 4,605 out of 67,459
  • In genomics: 818 out of 4,579
• Year to date:
  • Site-wide: 11,843 out of 67,459
• Since beginning of last month:
  • Site-wide: 13,929 out of 67,459

Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis

• Downloaded 1,109 times
• Download rankings, all-time:
  • Site-wide: 6,606 out of 67,459
  • In genomics: 1,076 out of 4,579
• Year to date:
  • Site-wide: 25,482 out of 67,459
• Since beginning of last month:
  • Site-wide: 41,315 out of 67,459

Resolving the fibrotic niche of human liver cirrhosis using single-cell transcriptomics

• Downloaded 1,075 times
• Download rankings, all-time:
  • Site-wide: 6,949 out of 67,459
  • In immunology: 112 out of 1,718
• Year to date:
  • Site-wide: 1,743 out of 67,459
• Since beginning of last month:
  • Site-wide: 1,826 out of 67,459

Beyond comparisons of means: understanding changes in gene expression at the single-cell level

• Downloaded 1,004 times
• Download rankings, all-time:
  • Site-wide: 7,732 out of 67,459
  • In genomics: 1,226 out of 4,579
• Year to date:
  • Site-wide: 56,710 out of 67,459
• Since beginning of last month:
  • Site-wide: 65,452 out of 67,459

MOFA+: a probabilistic framework for comprehensive integration of structured single-cell data

• Downloaded 743 times
• Download rankings, all-time:
  • Site-wide: 12,365 out of 67,459
  • In bioinformatics: 2,032 out of 6,644
• Year to date:
  • Site-wide: 3,339 out of 67,459
• Since beginning of last month:
  • Site-wide: 104 out of 67,459

Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data

• Downloaded 715 times
• Download rankings, all-time:
  • Site-wide: 13,080 out of 67,459
  • In bioinformatics: 2,126 out of 6,644
• Year to date:
  • Site-wide: 52,951 out of 67,459
• Since beginning of last month:
  • Site-wide: 46,878 out of 67,459

CellBender remove-background: a deep generative model for unsupervised removal of background noise from scRNA-seq datasets

• Downloaded 705 times
• Download rankings, all-time:
  • Site-wide: 13,335 out of 67,459
  • In bioinformatics: 2,161 out of 6,644
• Year to date:
  • Site-wide: 3,663 out of 67,459
• Since beginning of last month:
  • Site-wide: 435 out of 67,459

Rora regulates activated T helper cells during inflammation

• Downloaded 483 times
• Download rankings, all-time:
  • Site-wide: 22,176 out of 67,459
  • In immunology: 416 out of 1,718
• Year to date:
  • Site-wide: 6,938 out of 67,459
• Since beginning of last month:
  • Site-wide: 20,282 out of 67,459

Investigating higher order interactions in single cell data with scHOT

• Downloaded 417 times
• Download rankings, all-time:
  • Site-wide: 26,305 out of 67,459
  • In bioinformatics: 3,578 out of 6,644
• Year to date:
  • Site-wide: 8,885 out of 67,459
• Since beginning of last month:
  • Site-wide: 283 out of 67,459