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Author: Eleazar Eskin

Rankings

  • All-time downloads: 79,797 (rank: 2,028 )
  • Categories:
    • bioinformatics: 31,424 (rank: 99 )
    • epidemiology: 403 (rank: 20,314 (tie) )
    • genetics: 15,696 (rank: 938 )
    • genomics: 16,256 (rank: 975 )
    • health informatics: 448 (rank: 1,895 (tie) )
    • immunology: 4,660 (rank: 2,176 (tie) )
    • infectious diseases: 5,538 (rank: 8,459 (tie) )
    • microbiology: 4,099 (rank: 3,861 (tie) )
    • public and global health: 348 (rank: 8,657 (tie) )
    • scientific communication and education: 925 (rank: 1,176 (tie) )

Downloads per author, site-wide

Preprints

Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing

infectious diseases more details view paper
  • Downloaded 5,538 times
  • Download rankings, all-time:
    • Site-wide: 2,090
    • In infectious diseases: 528
  • Year to date:
    • Site-wide: 2,773
  • Since beginning of last month:
    • Site-wide: 25,244

Challenges and recommendations to improve installability and archival stability of omics computational tools

bioinformatics more details view paper
  • Downloaded 5,475 times
  • Download rankings, all-time:
    • Site-wide: 2,112
    • In bioinformatics: 159
  • Year to date:
    • Site-wide: 47,092
  • Since beginning of last month:
    • Site-wide: 71,563

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,732 times
  • Download rankings, all-time:
    • Site-wide: 2,585
    • In genomics: 255
  • Year to date:
    • Site-wide: 32,918
  • Since beginning of last month:
    • Site-wide: 10,061

Profiling immunoglobulin repertoires across multiple human tissues by RNA Sequencing

immunology more details view paper
  • Downloaded 4,660 times
  • Download rankings, all-time:
    • Site-wide: 2,637
    • In immunology: 92
  • Year to date:
    • Site-wide: 18,207
  • Since beginning of last month:
    • Site-wide: 11,121

Local genetic effects on gene expression across 44 human tissues

genomics more details view paper
  • Downloaded 4,523 times
  • Download rankings, all-time:
    • Site-wide: 2,748
    • In genomics: 275
  • Year to date:
    • Site-wide: 59,511
  • Since beginning of last month:
    • Site-wide: 11,187

Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia

microbiology more details view paper
  • Downloaded 4,099 times
  • Download rankings, all-time:
    • Site-wide: 3,165
    • In microbiology: 224
  • Year to date:
    • Site-wide: 35,786
  • Since beginning of last month:
    • Site-wide: 99,582

Word and sentence embedding tools to measure semantic similarity of Gene Ontology terms by their definitions

bioinformatics more details view paper
  • Downloaded 3,352 times
  • Download rankings, all-time:
    • Site-wide: 4,183
    • In bioinformatics: 401
  • Year to date:
    • Site-wide: 13,165
  • Since beginning of last month:
    • Site-wide: 6,707

Distant regulatory effects of genetic variation in multiple human tissues

genomics more details view paper
  • Downloaded 2,859 times
  • Download rankings, all-time:
    • Site-wide: 5,251
    • In genomics: 532
  • Year to date:
    • Site-wide: 53,353
  • Since beginning of last month:
    • Site-wide: 8,371

Comprehensive analysis of RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues

genomics more details view paper
  • Downloaded 2,824 times
  • Download rankings, all-time:
    • Site-wide: 5,353
    • In genomics: 543
  • Year to date:
    • Site-wide: 64,403
  • Since beginning of last month:
    • Site-wide: 16,322

UMI-Reducer: Collapsing duplicate sequencing reads via Unique Molecular Identifiers

bioinformatics more details view paper
  • Downloaded 2,740 times
  • Download rankings, all-time:
    • Site-wide: 5,578
    • In bioinformatics: 565
  • Year to date:
    • Site-wide: 34,546
  • Since beginning of last month:
    • Site-wide: None

Review: Population Structure in Genetic Studies: Confounding Factors and Mixed Models

bioinformatics more details view paper
  • Downloaded 2,543 times
  • Download rankings, all-time:
    • Site-wide: 6,246
    • In bioinformatics: 655
  • Year to date:
    • Site-wide: 67,078
  • Since beginning of last month:
    • Site-wide: 77,922

A comprehensive benchmarking of WGS-based structural variant callers

bioinformatics more details view paper
  • Downloaded 2,510 times
  • Download rankings, all-time:
    • Site-wide: 6,368
    • In bioinformatics: 676
  • Year to date:
    • Site-wide: 5,977
  • Since beginning of last month:
    • Site-wide: 82,394

Widespread allelic heterogeneity in complex traits

genetics more details view paper
  • Downloaded 1,861 times
  • Download rankings, all-time:
    • Site-wide: 9,850
    • In genetics: 431
  • Year to date:
    • Site-wide: 114,179
  • Since beginning of last month:
    • Site-wide: None

Leveraging molecular QTL to understand the genetic architecture of diseases and complex traits

genetics more details view paper
  • Downloaded 1,709 times
  • Download rankings, all-time:
    • Site-wide: 11,188
    • In genetics: 493
  • Year to date:
    • Site-wide: 134,739
  • Since beginning of last month:
    • Site-wide: None

Colocalization of GWAS and eQTL Signals Detects Target Genes

genetics more details view paper
  • Downloaded 1,665 times
  • Download rankings, all-time:
    • Site-wide: 11,622
    • In genetics: 521
  • Year to date:
    • Site-wide: 88,508
  • Since beginning of last month:
    • Site-wide: 17,504

Benchmarking of computational error-correction methods for next-generation sequencing data

bioinformatics more details view paper
  • Downloaded 1,479 times
  • Download rankings, all-time:
    • Site-wide: 13,818
    • In bioinformatics: 1,593
  • Year to date:
    • Site-wide: 71,737
  • Since beginning of last month:
    • Site-wide: 95,356

Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology

bioinformatics more details view paper
  • Downloaded 1,473 times
  • Download rankings, all-time:
    • Site-wide: 13,903
    • In bioinformatics: 1,605
  • Year to date:
    • Site-wide: 103,643
  • Since beginning of last month:
    • Site-wide: 35,146

MiCoP: Microbial Community Profiling method for detecting viral and fungal organisms in metagenomic samples

bioinformatics more details view paper
  • Downloaded 1,463 times
  • Download rankings, all-time:
    • Site-wide: 14,058
    • In bioinformatics: 1,622
  • Year to date:
    • Site-wide: 110,923
  • Since beginning of last month:
    • Site-wide: 37,911

Improved methods for multi-trait fine mapping of pleiotropic risk loci

genetics more details view paper
  • Downloaded 1,205 times
  • Download rankings, all-time:
    • Site-wide: 18,823
    • In genetics: 869
  • Year to date:
    • Site-wide: 138,834
  • Since beginning of last month:
    • Site-wide: None

Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate

genetics more details view paper
  • Downloaded 1,172 times
  • Download rankings, all-time:
    • Site-wide: 19,616
    • In genetics: 906
  • Year to date:
    • Site-wide: 116,647
  • Since beginning of last month:
    • Site-wide: 22,948

The genetic basis of host choice and resting behavior in the major African malaria vector, Anopheles arabiensis

genetics more details view paper
  • Downloaded 1,162 times
  • Download rankings, all-time:
    • Site-wide: 19,854
    • In genetics: 911
  • Year to date:
    • Site-wide: 98,717
  • Since beginning of last month:
    • Site-wide: 48,249

Spatial localization of recent ancestors for admixed individuals

genetics more details view paper
  • Downloaded 1,145 times
  • Download rankings, all-time:
    • Site-wide: 20,299
    • In genetics: 932
  • Year to date:
    • Site-wide: 142,123
  • Since beginning of last month:
    • Site-wide: 101,713

An Ancestry Based Approach for Detecting Interactions

genetics more details view paper
  • Downloaded 1,125 times
  • Download rankings, all-time:
    • Site-wide: 20,827
    • In genetics: 959
  • Year to date:
    • Site-wide: 119,137
  • Since beginning of last month:
    • Site-wide: None

HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads

bioinformatics more details view paper
  • Downloaded 1,033 times
  • Download rankings, all-time:
    • Site-wide: 23,629
    • In bioinformatics: 2,695
  • Year to date:
    • Site-wide: 85,429
  • Since beginning of last month:
    • Site-wide: None

Rapid cost-effective viral genome sequencing by V-seq

genomics more details view paper
  • Downloaded 1,026 times
  • Download rankings, all-time:
    • Site-wide: 23,846
    • In genomics: 2,241
  • Year to date:
    • Site-wide: 25,137
  • Since beginning of last month:
    • Site-wide: 25,180

Leveraging allele-specific expression to refine fine-mapping for eQTL studies

genetics more details view paper
  • Downloaded 1,006 times
  • Download rankings, all-time:
    • Site-wide: 24,510
    • In genetics: 1,121
  • Year to date:
    • Site-wide: 119,047
  • Since beginning of last month:
    • Site-wide: None

A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference

bioinformatics more details view paper
  • Downloaded 999 times
  • Download rankings, all-time:
    • Site-wide: 24,767
    • In bioinformatics: 2,818
  • Year to date:
    • Site-wide: 143,688
  • Since beginning of last month:
    • Site-wide: 100,425

Selection on the FADS region in Europeans

genetics more details view paper
  • Downloaded 967 times
  • Download rankings, all-time:
    • Site-wide: 26,048
    • In genetics: 1,189
  • Year to date:
    • Site-wide: 144,763
  • Since beginning of last month:
    • Site-wide: None

Improving the usability and comprehensiveness of microbial databases

bioinformatics more details view paper
  • Downloaded 951 times
  • Download rankings, all-time:
    • Site-wide: 26,675
    • In bioinformatics: 3,017
  • Year to date:
    • Site-wide: 76,071
  • Since beginning of last month:
    • Site-wide: 95,975

Identifying Causal Variants by Fine Mapping Across Multiple Studies

bioinformatics more details view paper
  • Downloaded 932 times
  • Download rankings, all-time:
    • Site-wide: 27,427
    • In bioinformatics: 3,096
  • Year to date:
    • Site-wide: 23,337
  • Since beginning of last month:
    • Site-wide: 11,228

Long single-molecule reads can resolve the complexity of the Influenza virus composed of rare, closely related mutant variants

bioinformatics more details view paper
  • Downloaded 926 times
  • Download rankings, all-time:
    • Site-wide: 27,700
    • In bioinformatics: 3,124
  • Year to date:
    • Site-wide: 103,598
  • Since beginning of last month:
    • Site-wide: 33,959

Addressing the digital divide in contemporary biology: Lessons from teaching UNIX

scientific communication and education more details view paper
  • Downloaded 925 times
  • Download rankings, all-time:
    • Site-wide: 27,719
    • In scientific communication and education: 205
  • Year to date:
    • Site-wide: 96,951
  • Since beginning of last month:
    • Site-wide: None

Evaluating Representations for Gene Ontology Terms

bioinformatics more details view paper
  • Downloaded 827 times
  • Download rankings, all-time:
    • Site-wide: 32,445
    • In bioinformatics: 3,577
  • Year to date:
    • Site-wide: 39,463
  • Since beginning of last month:
    • Site-wide: 96,758

Metalign: Efficient alignment-based metagenomic profiling via containment min hash

bioinformatics more details view paper
  • Downloaded 819 times
  • Download rankings, all-time:
    • Site-wide: 32,827
    • In bioinformatics: 3,612
  • Year to date:
    • Site-wide: 106,584
  • Since beginning of last month:
    • Site-wide: 115,375

A method to map and interpret pleiotropic loci using summary statistics of multiple traits

bioinformatics more details view paper
  • Downloaded 818 times
  • Download rankings, all-time:
    • Site-wide: 32,911
    • In bioinformatics: 3,613
  • Year to date:
    • Site-wide: 34,453
  • Since beginning of last month:
    • Site-wide: 129,224

The Multivariate Normal Distribution Framework for Analyzing Association Studies

genetics more details view paper
  • Downloaded 792 times
  • Download rankings, all-time:
    • Site-wide: 34,466
    • In genetics: 1,578
  • Year to date:
    • Site-wide: 69,860
  • Since beginning of last month:
    • Site-wide: 12,526

Critical Assessment of Metagenome Interpretation - the second round of challenges

bioinformatics more details view paper
  • Downloaded 709 times
  • Download rankings, all-time:
    • Site-wide: 40,154
    • In bioinformatics: 4,306
  • Year to date:
    • Site-wide: 5,455
  • Since beginning of last month:
    • Site-wide: 23,928

Fast and accurate construction of confidence intervals for heritability

genetics more details view paper
  • Downloaded 676 times
  • Download rankings, all-time:
    • Site-wide: 42,757
    • In genetics: 1,917
  • Year to date:
    • Site-wide: 122,718
  • Since beginning of last month:
    • Site-wide: None

Applying meta-analysis to Genotype-Tissue Expression data from multiple tissues to identify eQTLs and increase the number of eGenes

bioinformatics more details view paper
  • Downloaded 643 times
  • Download rankings, all-time:
    • Site-wide: 45,639
    • In bioinformatics: 4,761
  • Year to date:
    • Site-wide: 142,170
  • Since beginning of last month:
    • Site-wide: 47,802

Annotating Gene Ontology terms for protein sequences with the Transformer model

bioinformatics more details view paper
  • Downloaded 583 times
  • Download rankings, all-time:
    • Site-wide: 51,707
    • In bioinformatics: 5,250
  • Year to date:
    • Site-wide: 36,768
  • Since beginning of last month:
    • Site-wide: 53,875

A unifying framework for summary statistic imputation

bioinformatics more details view paper
  • Downloaded 498 times
  • Download rankings, all-time:
    • Site-wide: 62,385
    • In bioinformatics: 6,102
  • Year to date:
    • Site-wide: 145,188
  • Since beginning of last month:
    • Site-wide: None

Leveraging allelic heterogeneity to increase power of association testing

genetics more details view paper
  • Downloaded 456 times
  • Download rankings, all-time:
    • Site-wide: 68,692
    • In genetics: 3,017
  • Year to date:
    • Site-wide: 130,918
  • Since beginning of last month:
    • Site-wide: None

Projecting hospital resource utilization during a surge using parametric bootstrapping

health informatics more details view paper
  • Downloaded 448 times
  • Download rankings, all-time:
    • Site-wide: 69,956
    • In health informatics: 264
  • Year to date:
    • Site-wide: 53,902
  • Since beginning of last month:
    • Site-wide: 48,556

Genomic epidemiology of the Los Angeles COVID-19 outbreak

epidemiology more details view paper
  • Downloaded 403 times
  • Download rankings, all-time:
    • Site-wide: 77,594
    • In epidemiology: 3,335
  • Year to date:
    • Site-wide: 57,838
  • Since beginning of last month:
    • Site-wide: 83,218

Accurate modeling of replication rates in genome-wide association studies by accounting for winner's curse and study-specific heterogeneity

bioinformatics more details view paper
  • Downloaded 394 times
  • Download rankings, all-time:
    • Site-wide: 79,429
    • In bioinformatics: 7,264
  • Year to date:
    • Site-wide: 49,139
  • Since beginning of last month:
    • Site-wide: 56,705

Large-scale Genetic Analysis Identifies 66 Novel Loci for Asthma

genetics more details view paper
  • Downloaded 384 times
  • Download rankings, all-time:
    • Site-wide: 81,273
    • In genetics: 3,531
  • Year to date:
    • Site-wide: 125,171
  • Since beginning of last month:
    • Site-wide: 111,745

Robust Mendelian randomization in the presence of residual population stratification, batch effects and horizontal pleiotropy

genetics more details view paper
  • Downloaded 371 times
  • Download rankings, all-time:
    • Site-wide: 83,817
    • In genetics: 3,657
  • Year to date:
    • Site-wide: 55,042
  • Since beginning of last month:
    • Site-wide: 50,333

Expanding COVID-19 symptom screening to retail, restaurants, and schools by preserving privacy using relaxed digital signatures

public and global health more details view paper
  • Downloaded 348 times
  • Download rankings, all-time:
    • Site-wide: 88,464
    • In public and global health: 1,147
  • Year to date:
    • Site-wide: 72,979
  • Since beginning of last month:
    • Site-wide: 44,697

Calling differential DNA methylation at cell-type resolution: addressing misconceptions and best practices

genomics more details view paper
  • Downloaded 292 times
  • Download rankings, all-time:
    • Site-wide: 100,920
    • In genomics: 6,078
  • Year to date:
    • Site-wide: 19,723
  • Since beginning of last month:
    • Site-wide: 11,030

Leveraging pleiotropy in genome-wide association studies in multiple traits with per trait interpretations

bioinformatics more details view paper
  • Downloaded 257 times
  • Download rankings, all-time:
    • Site-wide: 109,415
    • In bioinformatics: 9,161
  • Year to date:
    • Site-wide: 128,131
  • Since beginning of last month:
    • Site-wide: 88,249

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