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Author: Eleazar Eskin

Rankings

  • All-time downloads: 92,094 (rank: 2,460 )
  • Categories:
    • bioinformatics: 37,034 (rank: 124 )
    • epidemiology: 536 (rank: 24,457 (tie) )
    • genetics: 16,855 (rank: 1,035 )
    • genomics: 17,088 (rank: 1,174 )
    • health informatics: 609 (rank: 2,434 (tie) )
    • immunology: 4,870 (rank: 3,377 (tie) )
    • infectious diseases: 6,685 (rank: 10,135 (tie) )
    • microbiology: 4,327 (rank: 5,044 (tie) )
    • public and global health: 480 (rank: 11,619 (tie) )
    • scientific communication and education: 1,051 (rank: 1,186 (tie) )

Downloads per author, site-wide

Preprints

Genetic pathways regulating the longitudinal acquisition of cocaine self-administration in inbred and recombinant inbred mice

genetics more details view paper

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Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing

infectious diseases more details view paper
  • Downloaded 6,917 times
  • Download rankings, all-time:
    • Site-wide: 2,200
    • In infectious diseases: 616
  • Year to date:
    • Site-wide: 3,277
  • Since beginning of last month:
    • Site-wide: 10,895

Challenges and recommendations to improve installability and archival stability of omics computational tools

bioinformatics more details view paper
  • Downloaded 5,673 times
  • Download rankings, all-time:
    • Site-wide: 2,866
    • In bioinformatics: 191
  • Year to date:
    • Site-wide: 87,312
  • Since beginning of last month:
    • Site-wide: 146,271

Profiling immunoglobulin repertoires across multiple human tissues by RNA Sequencing

immunology more details view paper
  • Downloaded 4,907 times
  • Download rankings, all-time:
    • Site-wide: 3,499
    • In immunology: 135
  • Year to date:
    • Site-wide: 63,992
  • Since beginning of last month:
    • Site-wide: 46,446

Computational Pan-Genomics: Status, Promises and Challenges

genomics more details view paper
  • Downloaded 4,873 times
  • Download rankings, all-time:
    • Site-wide: 3,527
    • In genomics: 309
  • Year to date:
    • Site-wide: 85,152
  • Since beginning of last month:
    • Site-wide: 33,751

Local genetic effects on gene expression across 44 human tissues

genomics more details view paper
  • Downloaded 4,687 times
  • Download rankings, all-time:
    • Site-wide: 3,731
    • In genomics: 329
  • Year to date:
    • Site-wide: 90,688
  • Since beginning of last month:
    • Site-wide: 51,257

Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia

microbiology more details view paper
  • Downloaded 4,400 times
  • Download rankings, all-time:
    • Site-wide: 4,044
    • In microbiology: 275
  • Year to date:
    • Site-wide: 46,277
  • Since beginning of last month:
    • Site-wide: 16,154

Word and sentence embedding tools to measure semantic similarity of Gene Ontology terms by their definitions

bioinformatics more details view paper
  • Downloaded 3,694 times
  • Download rankings, all-time:
    • Site-wide: 5,243
    • In bioinformatics: 451
  • Year to date:
    • Site-wide: 45,800
  • Since beginning of last month:
    • Site-wide: 42,579

A comprehensive benchmarking of WGS-based structural variant callers

bioinformatics more details view paper
  • Downloaded 3,495 times
  • Download rankings, all-time:
    • Site-wide: 5,689
    • In bioinformatics: 517
  • Year to date:
    • Site-wide: 8,686
  • Since beginning of last month:
    • Site-wide: 10,917

Distant regulatory effects of genetic variation in multiple human tissues

genomics more details view paper
  • Downloaded 2,985 times
  • Download rankings, all-time:
    • Site-wide: 7,153
    • In genomics: 655
  • Year to date:
    • Site-wide: 130,814
  • Since beginning of last month:
    • Site-wide: 62,610

Critical Assessment of Metagenome Interpretation - the second round of challenges

bioinformatics more details view paper
  • Downloaded 2,951 times
  • Download rankings, all-time:
    • Site-wide: 7,267
    • In bioinformatics: 711
  • Year to date:
    • Site-wide: 3,348
  • Since beginning of last month:
    • Site-wide: 19,932

Comprehensive analysis of RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues

genomics more details view paper
  • Downloaded 2,922 times
  • Download rankings, all-time:
    • Site-wide: 7,373
    • In genomics: 678
  • Year to date:
    • Site-wide: 135,403
  • Since beginning of last month:
    • Site-wide: 90,691

UMI-Reducer: Collapsing duplicate sequencing reads via Unique Molecular Identifiers

bioinformatics more details view paper
  • Downloaded 2,896 times
  • Download rankings, all-time:
    • Site-wide: 7,468
    • In bioinformatics: 697
  • Year to date:
    • Site-wide: 113,843
  • Since beginning of last month:
    • Site-wide: 94,802

Review: Population Structure in Genetic Studies: Confounding Factors and Mixed Models

bioinformatics more details view paper
  • Downloaded 2,775 times
  • Download rankings, all-time:
    • Site-wide: 7,945
    • In bioinformatics: 767
  • Year to date:
    • Site-wide: 77,577
  • Since beginning of last month:
    • Site-wide: 46,170

Widespread allelic heterogeneity in complex traits

genetics more details view paper
  • Downloaded 1,962 times
  • Download rankings, all-time:
    • Site-wide: 13,424
    • In genetics: 507
  • Year to date:
    • Site-wide: 161,329
  • Since beginning of last month:
    • Site-wide: 94,203

Leveraging molecular QTL to understand the genetic architecture of diseases and complex traits

genetics more details view paper
  • Downloaded 1,824 times
  • Download rankings, all-time:
    • Site-wide: 14,974
    • In genetics: 589
  • Year to date:
    • Site-wide: 165,331
  • Since beginning of last month:
    • Site-wide: 108,663

Colocalization of GWAS and eQTL Signals Detects Target Genes

genetics more details view paper
  • Downloaded 1,810 times
  • Download rankings, all-time:
    • Site-wide: 15,166
    • In genetics: 600
  • Year to date:
    • Site-wide: 102,484
  • Since beginning of last month:
    • Site-wide: 164,552

Benchmarking of computational error-correction methods for next-generation sequencing data

bioinformatics more details view paper
  • Downloaded 1,632 times
  • Download rankings, all-time:
    • Site-wide: 17,804
    • In bioinformatics: 1,847
  • Year to date:
    • Site-wide: 117,652
  • Since beginning of last month:
    • Site-wide: 163,138

Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology

bioinformatics more details view paper
  • Downloaded 1,550 times
  • Download rankings, all-time:
    • Site-wide: 19,282
    • In bioinformatics: 2,020
  • Year to date:
    • Site-wide: 152,415
  • Since beginning of last month:
    • Site-wide: 119,821

MiCoP: Microbial Community Profiling method for detecting viral and fungal organisms in metagenomic samples

bioinformatics more details view paper
  • Downloaded 1,500 times
  • Download rankings, all-time:
    • Site-wide: 20,339
    • In bioinformatics: 2,121
  • Year to date:
    • Site-wide: 207,219
  • Since beginning of last month:
    • Site-wide: None

Improved methods for multi-trait fine mapping of pleiotropic risk loci

genetics more details view paper
  • Downloaded 1,279 times
  • Download rankings, all-time:
    • Site-wide: 26,232
    • In genetics: 1,008
  • Year to date:
    • Site-wide: 192,301
  • Since beginning of last month:
    • Site-wide: 161,026

The genetic basis of host choice and resting behavior in the major African malaria vector, Anopheles arabiensis

genetics more details view paper
  • Downloaded 1,265 times
  • Download rankings, all-time:
    • Site-wide: 26,681
    • In genetics: 1,050
  • Year to date:
    • Site-wide: 143,622
  • Since beginning of last month:
    • Site-wide: 69,108

Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate

genetics more details view paper
  • Downloaded 1,252 times
  • Download rankings, all-time:
    • Site-wide: 27,135
    • In genetics: 1,065
  • Year to date:
    • Site-wide: 143,649
  • Since beginning of last month:
    • Site-wide: 79,292

Rapid cost-effective viral genome sequencing by V-seq

genomics more details view paper
  • Downloaded 1,230 times
  • Download rankings, all-time:
    • Site-wide: 27,861
    • In genomics: 2,336
  • Year to date:
    • Site-wide: 81,995
  • Since beginning of last month:
    • Site-wide: 110,540

Spatial localization of recent ancestors for admixed individuals

genetics more details view paper
  • Downloaded 1,208 times
  • Download rankings, all-time:
    • Site-wide: 28,655
    • In genetics: 1,109
  • Year to date:
    • Site-wide: 193,933
  • Since beginning of last month:
    • Site-wide: 181,424

An Ancestry Based Approach for Detecting Interactions

genetics more details view paper
  • Downloaded 1,208 times
  • Download rankings, all-time:
    • Site-wide: 28,656
    • In genetics: 1,113
  • Year to date:
    • Site-wide: 204,782
  • Since beginning of last month:
    • Site-wide: 192,253

Identifying Causal Variants by Fine Mapping Across Multiple Studies

bioinformatics more details view paper
  • Downloaded 1,150 times
  • Download rankings, all-time:
    • Site-wide: 31,006
    • In bioinformatics: 3,245
  • Year to date:
    • Site-wide: 113,307
  • Since beginning of last month:
    • Site-wide: 83,086

HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads

bioinformatics more details view paper
  • Downloaded 1,149 times
  • Download rankings, all-time:
    • Site-wide: 31,033
    • In bioinformatics: 3,178
  • Year to date:
    • Site-wide: 185,078
  • Since beginning of last month:
    • Site-wide: 192,531

Improving the usability and comprehensiveness of microbial databases

bioinformatics more details view paper
  • Downloaded 1,138 times
  • Download rankings, all-time:
    • Site-wide: 31,497
    • In bioinformatics: 3,309
  • Year to date:
    • Site-wide: 84,131
  • Since beginning of last month:
    • Site-wide: 108,506

Evaluating Representations for Gene Ontology Terms

bioinformatics more details view paper
  • Downloaded 1,103 times
  • Download rankings, all-time:
    • Site-wide: 33,035
    • In bioinformatics: 3,547
  • Year to date:
    • Site-wide: 61,779
  • Since beginning of last month:
    • Site-wide: 42,766

Leveraging allele-specific expression to refine fine-mapping for eQTL studies

genetics more details view paper
  • Downloaded 1,089 times
  • Download rankings, all-time:
    • Site-wide: 33,701
    • In genetics: 1,319
  • Year to date:
    • Site-wide: 192,089
  • Since beginning of last month:
    • Site-wide: 146,678

Addressing the digital divide in contemporary biology: Lessons from teaching UNIX

scientific communication and education more details view paper
  • Downloaded 1,076 times
  • Download rankings, all-time:
    • Site-wide: 34,294
    • In scientific communication and education: 217
  • Year to date:
    • Site-wide: 132,738
  • Since beginning of last month:
    • Site-wide: 88,707

A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference

bioinformatics more details view paper
  • Downloaded 1,051 times
  • Download rankings, all-time:
    • Site-wide: 35,569
    • In bioinformatics: 3,631
  • Year to date:
    • Site-wide: 204,894
  • Since beginning of last month:
    • Site-wide: 145,690

Selection on the FADS region in Europeans

genetics more details view paper
  • Downloaded 1,029 times
  • Download rankings, all-time:
    • Site-wide: 36,722
    • In genetics: 1,422
  • Year to date:
    • Site-wide: 198,315
  • Since beginning of last month:
    • Site-wide: 194,047

Long single-molecule reads can resolve the complexity of the Influenza virus composed of rare, closely related mutant variants

bioinformatics more details view paper
  • Downloaded 1,002 times
  • Download rankings, all-time:
    • Site-wide: 38,265
    • In bioinformatics: 3,858
  • Year to date:
    • Site-wide: 198,483
  • Since beginning of last month:
    • Site-wide: 142,628

A method to map and interpret pleiotropic loci using summary statistics of multiple traits

bioinformatics more details view paper
  • Downloaded 959 times
  • Download rankings, all-time:
    • Site-wide: 40,943
    • In bioinformatics: 4,165
  • Year to date:
    • Site-wide: 125,650
  • Since beginning of last month:
    • Site-wide: 84,723

The Multivariate Normal Distribution Framework for Analyzing Association Studies

genetics more details view paper
  • Downloaded 945 times
  • Download rankings, all-time:
    • Site-wide: 41,865
    • In genetics: 1,655
  • Year to date:
    • Site-wide: 121,976
  • Since beginning of last month:
    • Site-wide: 79,286

Metalign: Efficient alignment-based metagenomic profiling via containment min hash

bioinformatics more details view paper
  • Downloaded 899 times
  • Download rankings, all-time:
    • Site-wide: 45,204
    • In bioinformatics: 4,445
  • Year to date:
    • Site-wide: 163,598
  • Since beginning of last month:
    • Site-wide: 185,341

Accurate modeling of replication rates in genome-wide association studies by accounting for winner's curse and study-specific heterogeneity

bioinformatics more details view paper
  • Downloaded 860 times
  • Download rankings, all-time:
    • Site-wide: 48,414
    • In bioinformatics: 5,324
  • Year to date:
    • Site-wide: 25,444
  • Since beginning of last month:
    • Site-wide: 17,988

Annotating Gene Ontology terms for protein sequences with the Transformer model

bioinformatics more details view paper
  • Downloaded 820 times
  • Download rankings, all-time:
    • Site-wide: 51,978
    • In bioinformatics: 5,139
  • Year to date:
    • Site-wide: 73,226
  • Since beginning of last month:
    • Site-wide: 109,138

Fast and accurate construction of confidence intervals for heritability

genetics more details view paper
  • Downloaded 739 times
  • Download rankings, all-time:
    • Site-wide: 60,600
    • In genetics: 2,315
  • Year to date:
    • Site-wide: 187,947
  • Since beginning of last month:
    • Site-wide: 93,072

Epigenomic and chromosomal architectural reconfiguration in developing human frontal cortex and hippocampus

genomics more details view paper
  • Downloaded 712 times
  • Download rankings, all-time:
    • Site-wide: 63,796
    • In genomics: None
  • Year to date:
    • Site-wide: 5,975
  • Since beginning of last month:
    • Site-wide: 253

Applying meta-analysis to Genotype-Tissue Expression data from multiple tissues to identify eQTLs and increase the number of eGenes

bioinformatics more details view paper
  • Downloaded 702 times
  • Download rankings, all-time:
    • Site-wide: 65,153
    • In bioinformatics: 6,037
  • Year to date:
    • Site-wide: 171,902
  • Since beginning of last month:
    • Site-wide: 106,436

Projecting hospital resource utilization during a surge using parametric bootstrapping

health informatics more details view paper
  • Downloaded 628 times
  • Download rankings, all-time:
    • Site-wide: 75,869
    • In health informatics: 324
  • Year to date:
    • Site-wide: 121,082
  • Since beginning of last month:
    • Site-wide: 169,994

Calling differential DNA methylation at cell-type resolution: addressing misconceptions and best practices

genomics more details view paper
  • Downloaded 592 times
  • Download rankings, all-time:
    • Site-wide: 81,714
    • In genomics: 5,279
  • Year to date:
    • Site-wide: 39,058
  • Since beginning of last month:
    • Site-wide: 54,044

A unifying framework for summary statistic imputation

bioinformatics more details view paper
  • Downloaded 587 times
  • Download rankings, all-time:
    • Site-wide: 82,655
    • In bioinformatics: 7,241
  • Year to date:
    • Site-wide: 197,874
  • Since beginning of last month:
    • Site-wide: 193,496

Genomic epidemiology of the Los Angeles COVID-19 outbreak

epidemiology more details view paper
  • Downloaded 556 times
  • Download rankings, all-time:
    • Site-wide: 88,441
    • In epidemiology: 3,808
  • Year to date:
    • Site-wide: 114,461
  • Since beginning of last month:
    • Site-wide: 131,780

Robust Mendelian randomization in the presence of residual population stratification, batch effects and horizontal pleiotropy

genetics more details view paper
  • Downloaded 550 times
  • Download rankings, all-time:
    • Site-wide: 89,488
    • In genetics: 3,433
  • Year to date:
    • Site-wide: 106,263
  • Since beginning of last month:
    • Site-wide: 96,112

Leveraging allelic heterogeneity to increase power of association testing

genetics more details view paper
  • Downloaded 539 times
  • Download rankings, all-time:
    • Site-wide: 91,820
    • In genetics: 3,451
  • Year to date:
    • Site-wide: 194,687
  • Since beginning of last month:
    • Site-wide: 142,215

Expanding COVID-19 symptom screening to retail, restaurants, and schools by preserving privacy using relaxed digital signatures

public and global health more details view paper
  • Downloaded 511 times
  • Download rankings, all-time:
    • Site-wide: 97,699
    • In public and global health: 1,495
  • Year to date:
    • Site-wide: 124,397
  • Since beginning of last month:
    • Site-wide: 58,100

Large-scale Genetic Analysis Identifies 66 Novel Loci for Asthma

genetics more details view paper
  • Downloaded 481 times
  • Download rankings, all-time:
    • Site-wide: 104,652
    • In genetics: 3,915
  • Year to date:
    • Site-wide: 165,260
  • Since beginning of last month:
    • Site-wide: 145,183

Leveraging pleiotropy in genome-wide association studies in multiple traits with per trait interpretations

bioinformatics more details view paper
  • Downloaded 332 times
  • Download rankings, all-time:
    • Site-wide: 144,925
    • In bioinformatics: 10,881
  • Year to date:
    • Site-wide: 205,256
  • Since beginning of last month:
    • Site-wide: 205,231

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