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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 59,974 bioRxiv papers from 266,630 authors.

Author: Xun Xu

  • Most recently observed institution: BGI-Shenzhen, Shenzhen 518083, China; China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China;

Rankings

  • All-time downloads: 26,210 (rank: 692 out of 266,630)
  • Categories:
    • bioinformatics: 4,319 (rank: 1,386 out of 23,797)
    • developmental biology: 1,003 (rank: 1,269 (tie) out of 9,995)
    • evolutionary biology: 810 (rank: 3,902 (tie) out of 14,777)
    • genetics: 1,063 (rank: 9,119 (tie) out of 27,028)
    • genomics: 13,519 (rank: 577 out of 31,184)
    • immunology: 1,249 (rank: 860 out of 11,818)
    • microbiology: 3,303 (rank: 376 out of 27,293)
    • molecular biology: 944 (rank: 1,931 (tie) out of 12,016)

Downloads per author, site-wide

Preprints

SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

bioinformatics more details view paper

No bioRxiv download data for this paper yet.

Efficient long single molecule sequencing for cost effective and accurate sequencing, haplotyping, and de novo assembly

genomics more details view paper
  • Downloaded 4,556 times
  • Download rankings, all-time:
    • Site-wide: 455 out of 59,974
    • In genomics: 122 out of 4,168
  • Year to date:
    • Site-wide: 242 out of 59,974
  • Since beginning of last month:
    • Site-wide: 2,094 out of 59,974

Construction of the third generation Zea mays haplotype map

bioinformatics more details view paper
  • Downloaded 3,881 times
  • Download rankings, all-time:
    • Site-wide: 641 out of 59,974
    • In bioinformatics: 128 out of 6,060
  • Year to date:
    • Site-wide: 17,677 out of 59,974
  • Since beginning of last month:
    • Site-wide: 28,970 out of 59,974

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

genomics more details view paper
  • Downloaded 2,236 times
  • Download rankings, all-time:
    • Site-wide: 1,754 out of 59,974
    • In genomics: 392 out of 4,168
  • Year to date:
    • Site-wide: 4,341 out of 59,974
  • Since beginning of last month:
    • Site-wide: 12,171 out of 59,974

Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

genomics more details view paper
  • Downloaded 1,341 times
  • Download rankings, all-time:
    • Site-wide: 4,189 out of 59,974
    • In genomics: 766 out of 4,168
  • Year to date:
    • Site-wide: 3,789 out of 59,974
  • Since beginning of last month:
    • Site-wide: 13,159 out of 59,974

Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood

genomics more details view paper
  • Downloaded 1,297 times
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    • Site-wide: 4,439 out of 59,974
    • In genomics: 798 out of 4,168
  • Year to date:
    • Site-wide: 2,876 out of 59,974
  • Since beginning of last month:
    • Site-wide: 4,713 out of 59,974

Circularization of genes and chromosome by CRISPR in human cells

genomics more details view paper
  • Downloaded 1,073 times
  • Download rankings, all-time:
    • Site-wide: 6,070 out of 59,974
    • In genomics: 1,016 out of 4,168
  • Year to date:
    • Site-wide: 20,226 out of 59,974
  • Since beginning of last month:
    • Site-wide: 34,686 out of 59,974

Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

developmental biology more details view paper
  • Downloaded 1,003 times
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    • Site-wide: 6,770 out of 59,974
    • In developmental biology: 138 out of 1,787
  • Year to date:
    • Site-wide: 4,744 out of 59,974
  • Since beginning of last month:
    • Site-wide: 10,092 out of 59,974

A multi-omic cohort as a reference point for promoting a healthy human gut microbiome

microbiology more details view paper
  • Downloaded 941 times
  • Download rankings, all-time:
    • Site-wide: 7,449 out of 59,974
    • In microbiology: 317 out of 4,799
  • Year to date:
    • Site-wide: 1,410 out of 59,974
  • Since beginning of last month:
    • Site-wide: 3,260 out of 59,974

PIRD: Pan immune repertoire database

immunology more details view paper
  • Downloaded 846 times
  • Download rankings, all-time:
    • Site-wide: 8,853 out of 59,974
    • In immunology: 134 out of 1,466
  • Year to date:
    • Site-wide: 4,793 out of 59,974
  • Since beginning of last month:
    • Site-wide: 2,530 out of 59,974

Recent origin of an XX/XY sex-determination system in the ancient plant lineage Ginkgo biloba

evolutionary biology more details view paper
  • Downloaded 810 times
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    • Site-wide: 9,450 out of 59,974
    • In evolutionary biology: 636 out of 4,100
  • Year to date:
    • Site-wide: 1,843 out of 59,974
  • Since beginning of last month:
    • Site-wide: 6,742 out of 59,974

3′ Branch Ligation: A Novel Method to Ligate Non-Complementary DNA to Recessed or Internal 3′ OH Ends in DNA or RNA

molecular biology more details view paper
  • Downloaded 764 times
  • Download rankings, all-time:
    • Site-wide: 10,318 out of 59,974
    • In molecular biology: 293 out of 1,850
  • Year to date:
    • Site-wide: 5,777 out of 59,974
  • Since beginning of last month:
    • Site-wide: 6,187 out of 59,974

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

microbiology more details view paper
  • Downloaded 747 times
  • Download rankings, all-time:
    • Site-wide: 10,632 out of 59,974
    • In microbiology: 479 out of 4,799
  • Year to date:
    • Site-wide: 13,623 out of 59,974
  • Since beginning of last month:
    • Site-wide: 18,282 out of 59,974

Life history recorded in the vagino-cervical microbiome

microbiology more details view paper
  • Downloaded 676 times
  • Download rankings, all-time:
    • Site-wide: 12,268 out of 59,974
    • In microbiology: 575 out of 4,799
  • Year to date:
    • Site-wide: 2,528 out of 59,974
  • Since beginning of last month:
    • Site-wide: 2,461 out of 59,974

Age-dependent sexual dimorphism in the adult human gut microbiota

genomics more details view paper
  • Downloaded 541 times
  • Download rankings, all-time:
    • Site-wide: 16,628 out of 59,974
    • In genomics: 2,076 out of 4,168
  • Year to date:
    • Site-wide: 3,732 out of 59,974
  • Since beginning of last month:
    • Site-wide: 27,940 out of 59,974

Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome

genomics more details view paper
  • Downloaded 476 times
  • Download rankings, all-time:
    • Site-wide: 19,445 out of 59,974
    • In genomics: 2,272 out of 4,168
  • Year to date:
    • Site-wide: 4,572 out of 59,974
  • Since beginning of last month:
    • Site-wide: 8,747 out of 59,974

Integration of gut microbiome, host biomarkers, and urine metabolome data reveals networks of interactions associated with distinct clinical phenotypes

microbiology more details view paper
  • Downloaded 473 times
  • Download rankings, all-time:
    • Site-wide: 19,612 out of 59,974
    • In microbiology: 1,039 out of 4,799
  • Year to date:
    • Site-wide: 4,639 out of 59,974
  • Since beginning of last month:
    • Site-wide: 13,575 out of 59,974

Development of Coupling Controlled Polymerizations by Adapter-ligation in Mate-pair Sequencing for Detection of Various Genomic Variants in One Single Assay

genomics more details view paper
  • Downloaded 455 times
  • Download rankings, all-time:
    • Site-wide: 20,533 out of 59,974
    • In genomics: 2,343 out of 4,168
  • Year to date:
    • Site-wide: 9,993 out of 59,974
  • Since beginning of last month:
    • Site-wide: 13,135 out of 59,974

LFMD: detecting low-frequency mutations in genome sequencing data without molecular tags

bioinformatics more details view paper
  • Downloaded 438 times
  • Download rankings, all-time:
    • Site-wide: 21,452 out of 59,974
    • In bioinformatics: 3,099 out of 6,060
  • Year to date:
    • Site-wide: 5,265 out of 59,974
  • Since beginning of last month:
    • Site-wide: 2,032 out of 59,974

A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

genomics more details view paper
  • Downloaded 423 times
  • Download rankings, all-time:
    • Site-wide: 22,263 out of 59,974
    • In genomics: 2,472 out of 4,168
  • Year to date:
    • Site-wide: 5,590 out of 59,974
  • Since beginning of last month:
    • Site-wide: 16,706 out of 59,974

Sequencing of Panax notoginseng genome reveals genes involved in disease resistance and ginsenoside biosynthesis

genomics more details view paper
  • Downloaded 371 times
  • Download rankings, all-time:
    • Site-wide: 25,623 out of 59,974
    • In genomics: 2,675 out of 4,168
  • Year to date:
    • Site-wide: 22,317 out of 59,974
  • Since beginning of last month:
    • Site-wide: 20,489 out of 59,974

De novo assembly of the Mongolian gerbil genome and transcriptome

genomics more details view paper
  • Downloaded 366 times
  • Download rankings, all-time:
    • Site-wide: 26,009 out of 59,974
    • In genomics: 2,693 out of 4,168
  • Year to date:
    • Site-wide: 7,097 out of 59,974
  • Since beginning of last month:
    • Site-wide: 16,569 out of 59,974

Enhance genome editing efficiency and specificity by a quick CRISPR/Cas9 system

genetics more details view paper
  • Downloaded 336 times
  • Download rankings, all-time:
    • Site-wide: 28,268 out of 59,974
    • In genetics: 1,825 out of 3,425
  • Year to date:
    • Site-wide: 8,143 out of 59,974
  • Since beginning of last month:
    • Site-wide: 436 out of 59,974

Integrated multi-omics analysis to study the effects of simulated weightlessness on rhesus macaques (Macaca mulatta)

immunology more details view paper
  • Downloaded 241 times
  • Download rankings, all-time:
    • Site-wide: 37,343 out of 59,974
    • In immunology: 742 out of 1,466
  • Year to date:
    • Site-wide: 13,646 out of 59,974
  • Since beginning of last month:
    • Site-wide: 33,819 out of 59,974

Nationwide population genetic screening improves outcomes of newborn screening for hearing loss in China

genetics more details view paper
  • Downloaded 237 times
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    • Site-wide: 37,774 out of 59,974
    • In genetics: 2,339 out of 3,425
  • Year to date:
    • Site-wide: 19,515 out of 59,974
  • Since beginning of last month:
    • Site-wide: 28,789 out of 59,974

Dynamic chromosome rearrangements of the white-spotted bamboo shark shed light on cartilaginous fish diversification mechanisms

genomics more details view paper
  • Downloaded 218 times
  • Download rankings, all-time:
    • Site-wide: 39,923 out of 59,974
    • In genomics: 3,439 out of 4,168
  • Year to date:
    • Site-wide: 15,735 out of 59,974
  • Since beginning of last month:
    • Site-wide: 49,812 out of 59,974

Sequencing of the MHC region defines HLA-DQA1 as the major independent risk for anti-citrullinated protein antibodies (ACPA)-positive rheumatoid arthritis in Han population

genetics more details view paper
  • Downloaded 210 times
  • Download rankings, all-time:
    • Site-wide: 40,950 out of 59,974
    • In genetics: 2,490 out of 3,425
  • Year to date:
    • Site-wide: 28,850 out of 59,974
  • Since beginning of last month:
    • Site-wide: 40,901 out of 59,974

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

microbiology more details view paper
  • Downloaded 189 times
  • Download rankings, all-time:
    • Site-wide: 43,411 out of 59,974
    • In microbiology: 2,977 out of 4,799
  • Year to date:
    • Site-wide: 18,848 out of 59,974
  • Since beginning of last month:
    • Site-wide: 13,840 out of 59,974

PALM-Seq: simultaneous sequencing of cell-free long RNA and small RNA

molecular biology more details view paper
  • Downloaded 180 times
  • Download rankings, all-time:
    • Site-wide: 44,552 out of 59,974
    • In molecular biology: 1,296 out of 1,850
  • Year to date:
    • Site-wide: 20,071 out of 59,974
  • Since beginning of last month:
    • Site-wide: 10,272 out of 59,974

New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin

genetics more details view paper
  • Downloaded 173 times
  • Download rankings, all-time:
    • Site-wide: 45,356 out of 59,974
    • In genetics: 2,740 out of 3,425
  • Year to date:
    • Site-wide: 45,028 out of 59,974
  • Since beginning of last month:
    • Site-wide: 42,990 out of 59,974

Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater

genomics more details view paper
  • Downloaded 166 times
  • Download rankings, all-time:
    • Site-wide: 46,349 out of 59,974
    • In genomics: 3,699 out of 4,168
  • Year to date:
    • Site-wide: 22,002 out of 59,974
  • Since beginning of last month:
    • Site-wide: 19,698 out of 59,974

Shotgun Metagenomics of 361 elderly women reveals gut microbiome change in bone mass loss

microbiology more details view paper
  • Downloaded 164 times
  • Download rankings, all-time:
    • Site-wide: 46,648 out of 59,974
    • In microbiology: 3,318 out of 4,799
  • Year to date:
    • Site-wide: 22,403 out of 59,974
  • Since beginning of last month:
    • Site-wide: 14,431 out of 59,974

Recovered and dead outcome patients caused by influenza A (H7N9) virus infection show different pro-inflammatory cytokine dynamics during disease progress and its application in real-time prognosis

immunology more details view paper
  • Downloaded 162 times
  • Download rankings, all-time:
    • Site-wide: 46,908 out of 59,974
    • In immunology: 1,024 out of 1,466
  • Year to date:
    • Site-wide: 46,083 out of 59,974
  • Since beginning of last month:
    • Site-wide: 49,327 out of 59,974

The Urinary Microbiota in Relation to the Reproductive Tract Microbiota

microbiology more details view paper
  • Downloaded 113 times
  • Download rankings, all-time:
    • Site-wide: 53,270 out of 59,974
    • In microbiology: 3,978 out of 4,799
  • Year to date:
    • Site-wide: 32,806 out of 59,974
  • Since beginning of last month:
    • Site-wide: 43,304 out of 59,974

M-GWAS for the gut microbiome in Chinese adults illuminates on complex diseases

genetics more details view paper
  • Downloaded 107 times
  • Download rankings, all-time:
    • Site-wide: 53,959 out of 59,974
    • In genetics: 3,146 out of 3,425
  • Year to date:
    • Site-wide: 34,199 out of 59,974
  • Since beginning of last month:
    • Site-wide: 3,146 out of 59,974

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