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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 66,889 bioRxiv papers from 294,495 authors.

Author: Xun Xu

  • Most recently observed institution: Institute for Stem cell and Regeneration, Chinese Academy of Sciences

Rankings

  • All-time downloads: 33,152 (rank: 538 out of 294,600)
  • Categories:
    • bioinformatics: 4,923 (rank: 1,220 out of 25,673)
    • developmental biology: 1,062 (rank: 1,365 (tie) out of 11,110)
    • evolutionary biology: 897 (rank: 3,854 (tie) out of 16,073)
    • genetics: 1,316 (rank: 8,686 (tie) out of 29,418)
    • genomics: 17,891 (rank: 376 out of 33,528)
    • immunology: 1,351 (rank: 1,045 out of 13,831)
    • microbiology: 4,300 (rank: 240 out of 30,449)
    • molecular biology: 1,219 (rank: 1,614 (tie) out of 14,160)
    • synthetic biology: 193 (rank: 2,755 (tie) out of 2,917)

Downloads per author, site-wide

Preprints

Slicing the genome of star-fruit (Averrhoa carambola L.)

genomics more details view paper

No bioRxiv download data for this paper yet.

Efficient long single molecule sequencing for cost effective and accurate sequencing, haplotyping, and de novo assembly

genomics more details view paper
  • Downloaded 4,893 times
  • Download rankings, all-time:
    • Site-wide: 451 out of 66,916
    • In genomics: 117 out of 4,551
  • Year to date:
    • Site-wide: 290 out of 66,916
  • Since beginning of last month:
    • Site-wide: 2,649 out of 66,916

Construction of the third generation Zea mays haplotype map

bioinformatics more details view paper
  • Downloaded 3,933 times
  • Download rankings, all-time:
    • Site-wide: 702 out of 66,916
    • In bioinformatics: 138 out of 6,604
  • Year to date:
    • Site-wide: 18,590 out of 66,916
  • Since beginning of last month:
    • Site-wide: 19,461 out of 66,916

A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling

genomics more details view paper
  • Downloaded 2,695 times
  • Download rankings, all-time:
    • Site-wide: 1,412 out of 66,916
    • In genomics: 326 out of 4,551
  • Year to date:
    • Site-wide: 282 out of 66,916
  • Since beginning of last month:
    • Site-wide: 21 out of 66,916

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

genomics more details view paper
  • Downloaded 2,282 times
  • Download rankings, all-time:
    • Site-wide: 1,926 out of 66,916
    • In genomics: 421 out of 4,551
  • Year to date:
    • Site-wide: 5,561 out of 66,916
  • Since beginning of last month:
    • Site-wide: 22,869 out of 66,916

Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood

genomics more details view paper
  • Downloaded 1,420 times
  • Download rankings, all-time:
    • Site-wide: 4,317 out of 66,916
    • In genomics: 776 out of 4,551
  • Year to date:
    • Site-wide: 3,157 out of 66,916
  • Since beginning of last month:
    • Site-wide: 5,038 out of 66,916

Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

genomics more details view paper
  • Downloaded 1,396 times
  • Download rankings, all-time:
    • Site-wide: 4,442 out of 66,916
    • In genomics: 797 out of 4,551
  • Year to date:
    • Site-wide: 4,754 out of 66,916
  • Since beginning of last month:
    • Site-wide: 19,581 out of 66,916

A multi-omic cohort as a reference point for promoting a healthy human gut microbiome

microbiology more details view paper
  • Downloaded 1,115 times
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    • Site-wide: 6,460 out of 66,916
    • In microbiology: 252 out of 5,388
  • Year to date:
    • Site-wide: 1,587 out of 66,916
  • Since beginning of last month:
    • Site-wide: 1,533 out of 66,916

Circularization of genes and chromosome by CRISPR in human cells

genomics more details view paper
  • Downloaded 1,094 times
  • Download rankings, all-time:
    • Site-wide: 6,660 out of 66,916
    • In genomics: 1,090 out of 4,551
  • Year to date:
    • Site-wide: 24,952 out of 66,916
  • Since beginning of last month:
    • Site-wide: 37,573 out of 66,916

Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

developmental biology more details view paper
  • Downloaded 1,062 times
  • Download rankings, all-time:
    • Site-wide: 6,999 out of 66,916
    • In developmental biology: 142 out of 1,987
  • Year to date:
    • Site-wide: 5,779 out of 66,916
  • Since beginning of last month:
    • Site-wide: 29,594 out of 66,916

PIRD: Pan immune repertoire database

immunology more details view paper
  • Downloaded 898 times
  • Download rankings, all-time:
    • Site-wide: 9,136 out of 66,916
    • In immunology: 153 out of 1,705
  • Year to date:
    • Site-wide: 5,948 out of 66,916
  • Since beginning of last month:
    • Site-wide: 17,963 out of 66,916

Recent origin of an XX/XY sex-determination system in the ancient plant lineage Ginkgo biloba

evolutionary biology more details view paper
  • Downloaded 897 times
  • Download rankings, all-time:
    • Site-wide: 9,152 out of 66,916
    • In evolutionary biology: 590 out of 4,447
  • Year to date:
    • Site-wide: 2,306 out of 66,916
  • Since beginning of last month:
    • Site-wide: 17,580 out of 66,916

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

microbiology more details view paper
  • Downloaded 828 times
  • Download rankings, all-time:
    • Site-wide: 10,361 out of 66,916
    • In microbiology: 454 out of 5,388
  • Year to date:
    • Site-wide: 12,963 out of 66,916
  • Since beginning of last month:
    • Site-wide: 10,422 out of 66,916

3′ Branch Ligation: A Novel Method to Ligate Non-Complementary DNA to Recessed or Internal 3′ OH Ends in DNA or RNA

molecular biology more details view paper
  • Downloaded 826 times
  • Download rankings, all-time:
    • Site-wide: 10,414 out of 66,916
    • In molecular biology: 306 out of 2,138
  • Year to date:
    • Site-wide: 6,797 out of 66,916
  • Since beginning of last month:
    • Site-wide: 21,913 out of 66,916

Life history recorded in the vagino-cervical microbiome

microbiology more details view paper
  • Downloaded 771 times
  • Download rankings, all-time:
    • Site-wide: 11,554 out of 66,916
    • In microbiology: 529 out of 5,388
  • Year to date:
    • Site-wide: 3,017 out of 66,916
  • Since beginning of last month:
    • Site-wide: 11,200 out of 66,916

Age-dependent sexual dimorphism in the adult human gut microbiota

genomics more details view paper
  • Downloaded 582 times
  • Download rankings, all-time:
    • Site-wide: 17,140 out of 66,916
    • In genomics: 2,114 out of 4,551
  • Year to date:
    • Site-wide: 4,861 out of 66,916
  • Since beginning of last month:
    • Site-wide: 27,270 out of 66,916

Initial data release and announcement of the Fish10K: Fish 10,000 Genomes Project

genomics more details view paper
  • Downloaded 581 times
  • Download rankings, all-time:
    • Site-wide: 17,198 out of 66,916
    • In genomics: 2,117 out of 4,551
  • Year to date:
    • Site-wide: 4,884 out of 66,916
  • Since beginning of last month:
    • Site-wide: 7,613 out of 66,916

LFMD: detecting low-frequency mutations in high-depth genome sequencing data without molecular tags

bioinformatics more details view paper
  • Downloaded 580 times
  • Download rankings, all-time:
    • Site-wide: 17,244 out of 66,916
    • In bioinformatics: 2,632 out of 6,604
  • Year to date:
    • Site-wide: 4,903 out of 66,916
  • Since beginning of last month:
    • Site-wide: 4,658 out of 66,916

Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome

genomics more details view paper
  • Downloaded 556 times
  • Download rankings, all-time:
    • Site-wide: 18,291 out of 66,916
    • In genomics: 2,209 out of 4,551
  • Year to date:
    • Site-wide: 5,290 out of 66,916
  • Since beginning of last month:
    • Site-wide: 15,273 out of 66,916

Integration of gut microbiome, host biomarkers, and urine metabolome data reveals networks of interactions associated with distinct clinical phenotypes

microbiology more details view paper
  • Downloaded 546 times
  • Download rankings, all-time:
    • Site-wide: 18,729 out of 66,916
    • In microbiology: 977 out of 5,388
  • Year to date:
    • Site-wide: 5,464 out of 66,916
  • Since beginning of last month:
    • Site-wide: 16,549 out of 66,916

Development of Coupling Controlled Polymerizations by Adapter-ligation in Mate-pair Sequencing for Detection of Various Genomic Variants in One Single Assay

genomics more details view paper
  • Downloaded 537 times
  • Download rankings, all-time:
    • Site-wide: 19,111 out of 66,916
    • In genomics: 2,273 out of 4,551
  • Year to date:
    • Site-wide: 10,039 out of 66,916
  • Since beginning of last month:
    • Site-wide: 14,340 out of 66,916

A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

genomics more details view paper
  • Downloaded 463 times
  • Download rankings, all-time:
    • Site-wide: 22,950 out of 66,916
    • In genomics: 2,539 out of 4,551
  • Year to date:
    • Site-wide: 7,129 out of 66,916
  • Since beginning of last month:
    • Site-wide: 24,077 out of 66,916

Enhance genome editing efficiency and specificity by a quick CRISPR/Cas9 system

genetics more details view paper
  • Downloaded 440 times
  • Download rankings, all-time:
    • Site-wide: 24,364 out of 66,916
    • In genetics: 1,608 out of 3,770
  • Year to date:
    • Site-wide: 7,794 out of 66,916
  • Since beginning of last month:
    • Site-wide: 11,752 out of 66,916

Over 50000 metagenomically assembled draft genomes for the human oral microbiome reveal new taxa

microbiology more details view paper
  • Downloaded 424 times
  • Download rankings, all-time:
    • Site-wide: 25,441 out of 66,916
    • In microbiology: 1,439 out of 5,388
  • Year to date:
    • Site-wide: 8,298 out of 66,916
  • Since beginning of last month:
    • Site-wide: 1,020 out of 66,916

De novo assembly of the Mongolian gerbil genome and transcriptome

genomics more details view paper
  • Downloaded 422 times
  • Download rankings, all-time:
    • Site-wide: 25,590 out of 66,916
    • In genomics: 2,706 out of 4,551
  • Year to date:
    • Site-wide: 8,371 out of 66,916
  • Since beginning of last month:
    • Site-wide: 10,535 out of 66,916

Sequencing of Panax notoginseng genome reveals genes involved in disease resistance and ginsenoside biosynthesis

genomics more details view paper
  • Downloaded 406 times
  • Download rankings, all-time:
    • Site-wide: 26,690 out of 66,916
    • In genomics: 2,792 out of 4,551
  • Year to date:
    • Site-wide: 24,973 out of 66,916
  • Since beginning of last month:
    • Site-wide: 35,316 out of 66,916

Nationwide population genetic screening improves outcomes of newborn screening for hearing loss in China

genetics more details view paper
  • Downloaded 287 times
  • Download rankings, all-time:
    • Site-wide: 37,271 out of 66,916
    • In genetics: 2,309 out of 3,770
  • Year to date:
    • Site-wide: 20,433 out of 66,916
  • Since beginning of last month:
    • Site-wide: 24,831 out of 66,916

Dynamic chromosome rearrangements of the white-spotted bamboo shark shed light on cartilaginous fish diversification mechanisms

genomics more details view paper
  • Downloaded 280 times
  • Download rankings, all-time:
    • Site-wide: 37,980 out of 66,916
    • In genomics: 3,426 out of 4,551
  • Year to date:
    • Site-wide: 15,798 out of 66,916
  • Since beginning of last month:
    • Site-wide: 19,701 out of 66,916

Integrated multi-omics analysis to study the effects of simulated weightlessness on rhesus macaques (Macaca mulatta)

immunology more details view paper
  • Downloaded 276 times
  • Download rankings, all-time:
    • Site-wide: 38,513 out of 66,916
    • In immunology: 814 out of 1,705
  • Year to date:
    • Site-wide: 16,197 out of 66,916
  • Since beginning of last month:
    • Site-wide: 47,166 out of 66,916

PALM-Seq: simultaneous sequencing of cell-free long RNA and small RNA

molecular biology more details view paper
  • Downloaded 271 times
  • Download rankings, all-time:
    • Site-wide: 39,066 out of 66,916
    • In molecular biology: 1,164 out of 2,138
  • Year to date:
    • Site-wide: 16,632 out of 66,916
  • Since beginning of last month:
    • Site-wide: 11,493 out of 66,916

SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

bioinformatics more details view paper
  • Downloaded 234 times
  • Download rankings, all-time:
    • Site-wide: 43,488 out of 66,916
    • In bioinformatics: 5,036 out of 6,604
  • Year to date:
    • Site-wide: 20,395 out of 66,916
  • Since beginning of last month:
    • Site-wide: 7,020 out of 66,916

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

microbiology more details view paper
  • Downloaded 230 times
  • Download rankings, all-time:
    • Site-wide: 44,005 out of 66,916
    • In microbiology: 2,987 out of 5,388
  • Year to date:
    • Site-wide: 20,859 out of 66,916
  • Since beginning of last month:
    • Site-wide: 45,825 out of 66,916

Sequencing of the MHC region defines HLA-DQA1 as the major independent risk for anti-citrullinated protein antibodies (ACPA)-positive rheumatoid arthritis in Han population

genetics more details view paper
  • Downloaded 226 times
  • Download rankings, all-time:
    • Site-wide: 44,468 out of 66,916
    • In genetics: 2,684 out of 3,770
  • Year to date:
    • Site-wide: 34,944 out of 66,916
  • Since beginning of last month:
    • Site-wide: 61,457 out of 66,916

Shotgun Metagenomics of 361 elderly women reveals gut microbiome change in bone mass loss

microbiology more details view paper
  • Downloaded 208 times
  • Download rankings, all-time:
    • Site-wide: 46,866 out of 66,916
    • In microbiology: 3,262 out of 5,388
  • Year to date:
    • Site-wide: 23,727 out of 66,916
  • Since beginning of last month:
    • Site-wide: 19,004 out of 66,916

New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin

genetics more details view paper
  • Downloaded 201 times
  • Download rankings, all-time:
    • Site-wide: 47,835 out of 66,916
    • In genetics: 2,870 out of 3,770
  • Year to date:
    • Site-wide: 47,471 out of 66,916
  • Since beginning of last month:
    • Site-wide: 46,495 out of 66,916

Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater

genomics more details view paper
  • Downloaded 201 times
  • Download rankings, all-time:
    • Site-wide: 47,812 out of 66,916
    • In genomics: 3,883 out of 4,551
  • Year to date:
    • Site-wide: 24,701 out of 66,916
  • Since beginning of last month:
    • Site-wide: 37,031 out of 66,916

Towards Practical and Robust DNA-based Data Archiving by Codec System Named 'Yin-Yang'

synthetic biology more details view paper
  • Downloaded 193 times
  • Download rankings, all-time:
    • Site-wide: 48,901 out of 66,916
    • In synthetic biology: 581 out of 635
  • Year to date:
    • Site-wide: 25,897 out of 66,916
  • Since beginning of last month:
    • Site-wide: 781 out of 66,916

The Urinary Microbiota in Relation to the Reproductive Tract Microbiota

microbiology more details view paper
  • Downloaded 178 times
  • Download rankings, all-time:
    • Site-wide: 50,955 out of 66,916
    • In microbiology: 3,677 out of 5,388
  • Year to date:
    • Site-wide: 28,400 out of 66,916
  • Since beginning of last month:
    • Site-wide: 46,401 out of 66,916

Recovered and dead outcome patients caused by influenza A (H7N9) virus infection show different pro-inflammatory cytokine dynamics during disease progress and its application in real-time prognosis

immunology more details view paper
  • Downloaded 177 times
  • Download rankings, all-time:
    • Site-wide: 51,187 out of 66,916
    • In immunology: 1,181 out of 1,705
  • Year to date:
    • Site-wide: 52,927 out of 66,916
  • Since beginning of last month:
    • Site-wide: 57,923 out of 66,916

TGS-GapCloser: fast and accurately passing through the Bermuda in large genome using error-prone third-generation long reads

bioinformatics more details view paper
  • Downloaded 176 times
  • Download rankings, all-time:
    • Site-wide: 51,303 out of 66,916
    • In bioinformatics: 5,605 out of 6,604
  • Year to date:
    • Site-wide: 28,777 out of 66,916
  • Since beginning of last month:
    • Site-wide: 900 out of 66,916

M-GWAS for the gut microbiome in Chinese adults illuminates on complex diseases

genetics more details view paper
  • Downloaded 162 times
  • Download rankings, all-time:
    • Site-wide: 53,411 out of 66,916
    • In genetics: 3,146 out of 3,770
  • Year to date:
    • Site-wide: 31,636 out of 66,916
  • Since beginning of last month:
    • Site-wide: 19,606 out of 66,916

DNB-Based On-Chip Motif Finding (DocMF): a High-Throughput Method to Profile Different Types of Protein-DNA Interactions

molecular biology more details view paper
  • Downloaded 122 times
  • Download rankings, all-time:
    • Site-wide: 58,943 out of 66,916
    • In molecular biology: 1,834 out of 2,138
  • Year to date:
    • Site-wide: 41,180 out of 66,916
  • Since beginning of last month:
    • Site-wide: 1,641 out of 66,916

Complete chloroplast genomes of 14 mangroves: phylogenetic and genomic comparative analyses

genomics more details view paper
  • Downloaded 83 times
  • Download rankings, all-time:
    • Site-wide: 63,375 out of 66,916
    • In genomics: 4,420 out of 4,551
  • Year to date:
    • Site-wide: 53,974 out of 66,916
  • Since beginning of last month:
    • Site-wide: 29,512 out of 66,916

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