Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,572 bioRxiv papers from 308,082 authors.

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Preprints

Three genomes of Osteoglossidae shed light on ancient teleost evolution

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Intratumor Heterogeneity and Evolution of Colorectal Cancer

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Efficient long single molecule sequencing for cost effective and accurate sequencing, haplotyping, and de novo assembly

• Downloaded 4,993 times
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  • In genomics: 117 out of 4,714
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  • Site-wide: 5,824 out of 70,572
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  • Site-wide: 4,137 out of 70,572

Construction of the third generation Zea mays haplotype map

• Downloaded 3,959 times
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  • In bioinformatics: 145 out of 6,912
• Year to date:
  • Site-wide: 25,365 out of 70,572
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  • Site-wide: 25,460 out of 70,572

A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling

• Downloaded 3,018 times
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  • Site-wide: 1,239 out of 70,572
  • In genomics: 283 out of 4,714
• Year to date:
  • Site-wide: 1,155 out of 70,572
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  • Site-wide: 585 out of 70,572

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

• Downloaded 2,305 times
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  • In genomics: 429 out of 4,714
• Year to date:
  • Site-wide: 18,346 out of 70,572
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  • Site-wide: 20,604 out of 70,572

Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood

• Downloaded 1,448 times
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  • In genomics: 801 out of 4,714
• Year to date:
  • Site-wide: 17,062 out of 70,572
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  • Site-wide: 8,565 out of 70,572

Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

• Downloaded 1,425 times
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  • Site-wide: 4,596 out of 70,572
  • In genomics: 816 out of 4,714
• Year to date:
  • Site-wide: 12,182 out of 70,572
• Since beginning of last month:
  • Site-wide: 28,686 out of 70,572

A multi-omic cohort as a reference point for promoting a healthy human gut microbiome

• Downloaded 1,208 times
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  • Site-wide: 6,036 out of 70,572
  • In microbiology: 227 out of 5,728
• Year to date:
  • Site-wide: 4,382 out of 70,572
• Since beginning of last month:
  • Site-wide: 5,963 out of 70,572

Circularization of genes and chromosome by CRISPR in human cells

• Downloaded 1,126 times
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  • Site-wide: 6,806 out of 70,572
  • In genomics: 1,104 out of 4,714
• Year to date:
  • Site-wide: 30,901 out of 70,572
• Since beginning of last month:
  • Site-wide: 16,091 out of 70,572

Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

• Downloaded 1,092 times
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  • Site-wide: 7,160 out of 70,572
  • In developmental biology: 151 out of 2,110
• Year to date:
  • Site-wide: 41,005 out of 70,572
• Since beginning of last month:
  • Site-wide: 22,751 out of 70,572

PIRD: Pan immune repertoire database

• Downloaded 966 times
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  • Site-wide: 8,730 out of 70,572
  • In immunology: 146 out of 1,819
• Year to date:
  • Site-wide: 11,193 out of 70,572
• Since beginning of last month:
  • Site-wide: 7,087 out of 70,572

Recent origin of an XX/XY sex-determination system in the ancient plant lineage Ginkgo biloba

• Downloaded 940 times
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  • Site-wide: 9,157 out of 70,572
  • In evolutionary biology: 573 out of 4,623
• Year to date:
  • Site-wide: 7,701 out of 70,572
• Since beginning of last month:
  • Site-wide: 16,892 out of 70,572

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

• Downloaded 877 times
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  • Site-wide: 10,185 out of 70,572
  • In microbiology: 443 out of 5,728
• Year to date:
  • Site-wide: 12,279 out of 70,572
• Since beginning of last month:
  • Site-wide: 11,068 out of 70,572

3′ Branch Ligation: A Novel Method to Ligate Non-Complementary DNA to Recessed or Internal 3′ OH Ends in DNA or RNA

• Downloaded 859 times
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  • Site-wide: 10,545 out of 70,572
  • In molecular biology: 313 out of 2,266
• Year to date:
  • Site-wide: 8,685 out of 70,572
• Since beginning of last month:
  • Site-wide: 38,367 out of 70,572

Life history recorded in the vagino-cervical microbiome

• Downloaded 843 times
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  • Site-wide: 10,883 out of 70,572
  • In microbiology: 477 out of 5,728
• Year to date:
  • Site-wide: 3,273 out of 70,572
• Since beginning of last month:
  • Site-wide: 9,812 out of 70,572

Initial data release and announcement of the Fish10K: Fish 10,000 Genomes Project

• Downloaded 707 times
• Download rankings, all-time:
  • Site-wide: 14,113 out of 70,572
  • In genomics: 1,881 out of 4,714
• Year to date:
  • Site-wide: 4,834 out of 70,572
• Since beginning of last month:
  • Site-wide: 3,209 out of 70,572

LFMD: detecting low-frequency mutations in high-depth genome sequencing data without molecular tags

• Downloaded 639 times
• Download rankings, all-time:
  • Site-wide: 16,312 out of 70,572
  • In bioinformatics: 2,516 out of 6,912
• Year to date:
  • Site-wide: 4,234 out of 70,572
• Since beginning of last month:
  • Site-wide: 17,430 out of 70,572

Age-dependent sexual dimorphism in the adult human gut microbiota

• Downloaded 595 times
• Download rankings, all-time:
  • Site-wide: 18,028 out of 70,572
  • In genomics: 2,187 out of 4,714
• Year to date:
  • Site-wide: 68,287 out of 70,572
• Since beginning of last month:
  • Site-wide: 36,446 out of 70,572

Integration of gut microbiome, host biomarkers, and urine metabolome data reveals networks of interactions associated with distinct clinical phenotypes

• Downloaded 584 times
• Download rankings, all-time:
  • Site-wide: 18,478 out of 70,572
  • In microbiology: 956 out of 5,728
• Year to date:
  • Site-wide: 30,249 out of 70,572
• Since beginning of last month:
  • Site-wide: 11,241 out of 70,572

Development of Coupling Controlled Polymerizations by Adapter-ligation in Mate-pair Sequencing for Detection of Various Genomic Variants in One Single Assay

• Downloaded 580 times
• Download rankings, all-time:
  • Site-wide: 18,699 out of 70,572
  • In genomics: 2,240 out of 4,714
• Year to date:
  • Site-wide: 64,668 out of 70,572
• Since beginning of last month:
  • Site-wide: 8,161 out of 70,572

Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome

• Downloaded 573 times
• Download rankings, all-time:
  • Site-wide: 18,987 out of 70,572
  • In genomics: 2,264 out of 4,714
• Year to date:
  • Site-wide: 54,961 out of 70,572
• Since beginning of last month:
  • Site-wide: 37,569 out of 70,572

Over 50000 metagenomically assembled draft genomes for the human oral microbiome reveal new taxa

• Downloaded 521 times
• Download rankings, all-time:
  • Site-wide: 21,489 out of 70,572
  • In microbiology: 1,154 out of 5,728
• Year to date:
  • Site-wide: 6,953 out of 70,572
• Since beginning of last month:
  • Site-wide: 4,823 out of 70,572

Enhance genome editing efficiency and specificity by a quick CRISPR/Cas9 system

• Downloaded 510 times
• Download rankings, all-time:
  • Site-wide: 22,088 out of 70,572
  • In genetics: 1,469 out of 3,911
• Year to date:
  • Site-wide: 6,604 out of 70,572
• Since beginning of last month:
  • Site-wide: 9,856 out of 70,572

A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

• Downloaded 493 times
• Download rankings, all-time:
  • Site-wide: 23,021 out of 70,572
  • In genomics: 2,548 out of 4,714
• Year to date:
  • Site-wide: 11,867 out of 70,572
• Since beginning of last month:
  • Site-wide: 40,237 out of 70,572

De novo assembly of the Mongolian gerbil genome and transcriptome

• Downloaded 445 times
• Download rankings, all-time:
  • Site-wide: 26,087 out of 70,572
  • In genomics: 2,756 out of 4,714
• Year to date:
  • Site-wide: 21,728 out of 70,572
• Since beginning of last month:
  • Site-wide: 25,355 out of 70,572

Identification of gut microbiome markers for schizophrenia delineates a potential role of Streptococcus

• Downloaded 440 times
• Download rankings, all-time:
  • Site-wide: 26,452 out of 70,572
  • In microbiology: 1,496 out of 5,728
• Year to date:
  • Site-wide: 30,577 out of 70,572
• Since beginning of last month:
  • Site-wide: 4,856 out of 70,572

Sequencing of Panax notoginseng genome reveals genes involved in disease resistance and ginsenoside biosynthesis

• Downloaded 421 times
• Download rankings, all-time:
  • Site-wide: 27,751 out of 70,572
  • In genomics: 2,885 out of 4,714
• Year to date:
  • Site-wide: 62,891 out of 70,572
• Since beginning of last month:
  • Site-wide: 36,524 out of 70,572

Nationwide population genetic screening improves outcomes of newborn screening for hearing loss in China

• Downloaded 313 times
• Download rankings, all-time:
  • Site-wide: 37,445 out of 70,572
  • In genetics: 2,304 out of 3,911
• Year to date:
  • Site-wide: 55,104 out of 70,572
• Since beginning of last month:
  • Site-wide: 18,827 out of 70,572

Dynamic chromosome rearrangements of the white-spotted bamboo shark shed light on cartilaginous fish diversification mechanisms

• Downloaded 312 times
• Download rankings, all-time:
  • Site-wide: 37,576 out of 70,572
  • In genomics: 3,445 out of 4,714
• Year to date:
  • Site-wide: 69,029 out of 70,572
• Since beginning of last month:
  • Site-wide: 11,629 out of 70,572

PALM-Seq: simultaneous sequencing of cell-free long RNA and small RNA

• Downloaded 308 times
• Download rankings, all-time:
  • Site-wide: 37,956 out of 70,572
  • In molecular biology: 1,136 out of 2,266
• Year to date:
  • Site-wide: 41,239 out of 70,572
• Since beginning of last month:
  • Site-wide: 10,419 out of 70,572

Integrated multi-omics analysis to study the effects of simulated weightlessness on rhesus macaques (Macaca mulatta)

• Downloaded 295 times
• Download rankings, all-time:
  • Site-wide: 39,375 out of 70,572
  • In immunology: 848 out of 1,819
• Year to date:
  • Site-wide: 64,931 out of 70,572
• Since beginning of last month:
  • Site-wide: 27,051 out of 70,572

SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

• Downloaded 274 times
• Download rankings, all-time:
  • Site-wide: 41,824 out of 70,572
  • In bioinformatics: 4,915 out of 6,912
• Year to date:
  • Site-wide: 16,342 out of 70,572
• Since beginning of last month:
  • Site-wide: 13,141 out of 70,572

Advanced Whole Genome Sequencing Using a Complete PCR-free Massively Parallel Sequencing (MPS) Workflow

• Downloaded 257 times
• Download rankings, all-time:
  • Site-wide: 43,966 out of 70,572
  • In genomics: 3,769 out of 4,714
• Year to date:
  • Site-wide: 1,040 out of 70,572
• Since beginning of last month:
  • Site-wide: 939 out of 70,572

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

• Downloaded 246 times
• Download rankings, all-time:
  • Site-wide: 45,395 out of 70,572
  • In microbiology: 3,062 out of 5,728
• Year to date:
  • Site-wide: 43,912 out of 70,572
• Since beginning of last month:
  • Site-wide: 34,895 out of 70,572

Towards Practical and Robust DNA-based Data Archiving by Codec System Named 'Yin-Yang'

• Downloaded 237 times
• Download rankings, all-time:
  • Site-wide: 46,559 out of 70,572
  • In synthetic biology: 591 out of 670
• Year to date:
  • Site-wide: 18,152 out of 70,572
• Since beginning of last month:
  • Site-wide: 8,455 out of 70,572

Sequencing of the MHC region defines HLA-DQA1 as the major independent risk for anti-citrullinated protein antibodies (ACPA)-positive rheumatoid arthritis in Han population

• Downloaded 237 times
• Download rankings, all-time:
  • Site-wide: 46,513 out of 70,572
  • In genetics: 2,788 out of 3,911
• Year to date:
  • Site-wide: 62,109 out of 70,572
• Since beginning of last month:
  • Site-wide: 46,147 out of 70,572

Single cell atlas of domestic pig brain illuminates the conservation and divergence of cell types at spatial and species levels

• Downloaded 230 times
• Download rankings, all-time:
  • Site-wide: 47,537 out of 70,572
  • In bioinformatics: 5,355 out of 6,912
• Year to date:
  • Site-wide: 7,086 out of 70,572
• Since beginning of last month:
  • Site-wide: 643 out of 70,572

Shotgun Metagenomics of 361 elderly women reveals gut microbiome change in bone mass loss

• Downloaded 230 times
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  • Site-wide: 47,503 out of 70,572
  • In microbiology: 3,271 out of 5,728
• Year to date:
  • Site-wide: 29,366 out of 70,572
• Since beginning of last month:
  • Site-wide: 28,990 out of 70,572

TGS-GapCloser: fast and accurately passing through the Bermuda in large genome using error-prone third-generation long reads

• Downloaded 220 times
• Download rankings, all-time:
  • Site-wide: 48,843 out of 70,572
  • In bioinformatics: 5,465 out of 6,912
• Year to date:
  • Site-wide: 6,335 out of 70,572
• Since beginning of last month:
  • Site-wide: 15,139 out of 70,572

Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater

• Downloaded 217 times
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  • Site-wide: 49,328 out of 70,572
  • In genomics: 3,996 out of 4,714
• Year to date:
  • Site-wide: 45,342 out of 70,572
• Since beginning of last month:
  • Site-wide: 38,074 out of 70,572

New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin

• Downloaded 212 times
• Download rankings, all-time:
  • Site-wide: 49,924 out of 70,572
  • In genetics: 2,969 out of 3,911
• Year to date:
  • Site-wide: 61,264 out of 70,572
• Since beginning of last month:
  • Site-wide: 48,528 out of 70,572

M-GWAS for the gut microbiome in Chinese adults illuminates on complex diseases

• Downloaded 206 times
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  • Site-wide: 50,824 out of 70,572
  • In genetics: 3,010 out of 3,911
• Year to date:
  • Site-wide: 15,072 out of 70,572
• Since beginning of last month:
  • Site-wide: 19,805 out of 70,572

The Urinary Microbiota in Relation to the Reproductive Tract Microbiota

• Downloaded 204 times
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  • Site-wide: 51,163 out of 70,572
  • In microbiology: 3,628 out of 5,728
• Year to date:
  • Site-wide: 41,052 out of 70,572
• Since beginning of last month:
  • Site-wide: 21,395 out of 70,572

Recovered and dead outcome patients caused by influenza A (H7N9) virus infection show different pro-inflammatory cytokine dynamics during disease progress and its application in real-time prognosis

• Downloaded 184 times
• Download rankings, all-time:
  • Site-wide: 54,022 out of 70,572
  • In immunology: 1,271 out of 1,819
• Year to date:
  • Site-wide: 69,106 out of 70,572
• Since beginning of last month:
  • Site-wide: 65,383 out of 70,572

Single cell atlas of trisomy 21 cerebral cortex

• Downloaded 149 times
• Download rankings, all-time:
  • Site-wide: 59,425 out of 70,572
  • In neuroscience: 10,614 out of 12,685
• Year to date:
  • Site-wide: 432 out of 70,572
• Since beginning of last month:
  • Site-wide: None out of 70,572

DNB-Based On-Chip Motif Finding (DocMF): a High-Throughput Method to Profile Different Types of Protein-DNA Interactions

• Downloaded 135 times
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  • Site-wide: 61,445 out of 70,572
  • In molecular biology: 1,943 out of 2,266
• Year to date:
  • Site-wide: None out of 70,572
• Since beginning of last month:
  • Site-wide: 26,017 out of 70,572

Draft Genomes of two Artocarpus plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

• Downloaded 124 times
• Download rankings, all-time:
  • Site-wide: 62,982 out of 70,572
  • In genomics: 4,505 out of 4,714
• Year to date:
  • Site-wide: 17,468 out of 70,572
• Since beginning of last month:
  • Site-wide: 2,003 out of 70,572

Complete chloroplast genomes of 14 mangroves: phylogenetic and genomic comparative analyses

• Downloaded 119 times
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  • Site-wide: 63,628 out of 70,572
  • In genomics: 4,523 out of 4,714
• Year to date:
  • Site-wide: 19,043 out of 70,572
• Since beginning of last month:
  • Site-wide: 17,609 out of 70,572

Slicing the genome of star-fruit (Averrhoa carambola L.)

• Downloaded 109 times
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  • Site-wide: 64,908 out of 70,572
  • In genomics: 4,556 out of 4,714
• Year to date:
  • Site-wide: 15,125 out of 70,572
• Since beginning of last month:
  • Site-wide: 11,535 out of 70,572

Independent domestications shape the genetic pattern of a reproductive isolation system in rice

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  • Site-wide: 69,388 out of 70,572
  • In evolutionary biology: 4,563 out of 4,623
• Year to date:
  • Site-wide: 4,217 out of 70,572
• Since beginning of last month:
  • Site-wide: None out of 70,572