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Author: Xun Xu

  • Most recently observed institution: 1.BGI-Shenzhen, Shenzhen 518083, China; 2.Guangdong Provincial Key Laboratory of Genome Read and Write, BGI-Shenzhen, Shenzhen, 518120, China

Rankings

  • All-time downloads: 77,267 (rank: 1,528 out of 513,246)
  • Categories:
    • bioinformatics: 8,108 (rank: 950 out of 37,058)
    • cancer biology: 163 (rank: 26,918 (tie) out of 31,622)
    • cell biology: 7,261 (rank: 341 out of 34,104)
    • developmental biology: 1,874 (rank: 1,207 (tie) out of 17,444)
    • epidemiology: 1,618 (rank: 4,850 out of 23,857)
    • evolutionary biology: 1,322 (rank: 3,926 (tie) out of 22,315)
    • genetic and genomic medicine: 1,489 (rank: 623 out of 6,816)
    • genetics: 3,796 (rank: 4,243 (tie) out of 38,777)
    • genomics: 33,908 (rank: 238 out of 45,811)
    • immunology: 2,020 (rank: 2,859 out of 27,864)
    • infectious diseases: 1,956 (rank: 10,718 (tie) out of 32,280)
    • microbiology: 7,391 (rank: 1,429 (tie) out of 52,513)
    • molecular biology: 2,057 (rank: 1,637 out of 24,289)
    • neuroscience: 1,178 (rank: 16,522 (tie) out of 73,732)
    • pathology: 1,481 (rank: 668 (tie) out of 5,884)
    • synthetic biology: 700 (rank: 2,304 (tie) out of 4,571)
    • systems biology: 945 (rank: 3,970 (tie) out of 12,917)

Downloads per author, site-wide

Preprints

Efficient long single molecule sequencing for cost effective and accurate sequencing, haplotyping, and de novo assembly

genomics more details view paper
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    • In genomics: 142 out of 6,455
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    • Site-wide: 9,292 out of 119,012
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    • Site-wide: 12,715 out of 119,012

A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling

genomics more details view paper
  • Downloaded 4,320 times
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    • Site-wide: 1,991 out of 119,012
    • In genomics: 242 out of 6,455
  • Year to date:
    • Site-wide: 4,134 out of 119,012
  • Since beginning of last month:
    • Site-wide: 9,887 out of 119,012

Construction of the third generation Zea mays haplotype map

bioinformatics more details view paper
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    • In bioinformatics: 202 out of 9,624
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    • Site-wide: 37,076 out of 119,012
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    • Site-wide: 30,633 out of 119,012

Single-cell atlas of a non-human primate reveals new pathogenic mechanisms of COVID-19

cell biology more details view paper
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    • In cell biology: 40 out of 5,450
  • Year to date:
    • Site-wide: 1,206 out of 119,012
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    • Site-wide: 4,954 out of 119,012

CoolMPS™: Advanced massively parallel sequencing using antibodies specific to each natural nucleobase

genomics more details view paper
  • Downloaded 3,431 times
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    • In genomics: 344 out of 6,455
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    • Site-wide: 4,868 out of 119,012

Multiple approaches for massively parallel sequencing of HCoV-19 (SARS-CoV-2) genomes directly from clinical samples

genomics more details view paper
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    • In genomics: 476 out of 6,455
  • Year to date:
    • Site-wide: 1,902 out of 119,012
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    • Site-wide: 16,929 out of 119,012

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

genomics more details view paper
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    • In genomics: 543 out of 6,455
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    • Site-wide: 37,577 out of 119,012

Single-cell screening of SARS-CoV-2 target cells in pets, livestock, poultry and wildlife

cell biology more details view paper
  • Downloaded 1,886 times
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    • In cell biology: 150 out of 5,450
  • Year to date:
    • Site-wide: 2,876 out of 119,012
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    • Site-wide: 7,428 out of 119,012

Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood

genomics more details view paper
  • Downloaded 1,716 times
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    • Site-wide: 7,596 out of 119,012
    • In genomics: 898 out of 6,455
  • Year to date:
    • Site-wide: 29,210 out of 119,012
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    • Site-wide: 51,845 out of 119,012

A multi-omic cohort as a reference point for promoting a healthy human gut microbiome

microbiology more details view paper
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    • Site-wide: 7,790 out of 119,012
    • In microbiology: 417 out of 9,401
  • Year to date:
    • Site-wide: 13,869 out of 119,012
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    • Site-wide: 12,090 out of 119,012

Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

genomics more details view paper
  • Downloaded 1,659 times
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    • Site-wide: 8,029 out of 119,012
    • In genomics: 952 out of 6,455
  • Year to date:
    • Site-wide: 33,549 out of 119,012
  • Since beginning of last month:
    • Site-wide: 51,819 out of 119,012

Advanced Whole Genome Sequencing Using an Entirely PCR-free Massively Parallel Sequencing Workflow

genomics more details view paper
  • Downloaded 1,640 times
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    • Site-wide: 8,170 out of 119,012
    • In genomics: 970 out of 6,455
  • Year to date:
    • Site-wide: 3,864 out of 119,012
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    • Site-wide: 5,164 out of 119,012

Single-Cell Analysis Reveals Macrophage-Driven T Cell Dysfunction in Severe COVID-19 Patients

pathology more details view paper
  • Downloaded 1,481 times
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    • Site-wide: 9,502 out of 119,012
    • In pathology: 49 out of 699
  • Year to date:
    • Site-wide: 3,834 out of 119,012
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    • Site-wide: 5,301 out of 119,012

Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

developmental biology more details view paper
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    • In developmental biology: 167 out of 3,133
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    • Site-wide: 30,838 out of 119,012
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    • Site-wide: 23,325 out of 119,012

Integrated profiling of single cell epigenomic and transcriptomic landscape of Parkinson's disease mouse brain

cell biology more details view paper
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    • Site-wide: 11,458 out of 119,012
    • In cell biology: 323 out of 5,450
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    • Site-wide: 4,422 out of 119,012
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    • Site-wide: 10,358 out of 119,012

PIRD: Pan immune repertoire database

immunology more details view paper
  • Downloaded 1,298 times
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    • Site-wide: 11,617 out of 119,012
    • In immunology: 292 out of 3,339
  • Year to date:
    • Site-wide: 22,306 out of 119,012
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    • Site-wide: 11,101 out of 119,012

Initial Study of Human Genetic Contribution to COVID-19 Severity and Susceptibility

genetic and genomic medicine more details view paper
  • Downloaded 1,296 times
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    • Site-wide: 11,638 out of 119,012
    • In genetic and genomic medicine: 29 out of 493
  • Year to date:
    • Site-wide: 4,481 out of 119,012
  • Since beginning of last month:
    • Site-wide: 2,914 out of 119,012

Circularization of genes and chromosome by CRISPR in human cells

genomics more details view paper
  • Downloaded 1,245 times
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    • In genomics: 1,406 out of 6,455
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    • Site-wide: 46,910 out of 119,012

Recent origin of an XX/XY sex-determination system in the ancient plant lineage Ginkgo biloba

evolutionary biology more details view paper
  • Downloaded 1,219 times
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    • Site-wide: 12,776 out of 119,012
    • In evolutionary biology: 512 out of 6,214
  • Year to date:
    • Site-wide: 26,881 out of 119,012
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    • Site-wide: 41,619 out of 119,012

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

microbiology more details view paper
  • Downloaded 1,168 times
  • Download rankings, all-time:
    • Site-wide: 13,620 out of 119,012
    • In microbiology: 752 out of 9,401
  • Year to date:
    • Site-wide: 26,258 out of 119,012
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    • Site-wide: 39,099 out of 119,012

3′ Branch Ligation: A Novel Method to Ligate Non-Complementary DNA to Recessed or Internal 3′ OH Ends in DNA or RNA

molecular biology more details view paper
  • Downloaded 1,094 times
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    • Site-wide: 15,011 out of 119,012
    • In molecular biology: 420 out of 3,634
  • Year to date:
    • Site-wide: 32,896 out of 119,012
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    • Site-wide: 11,716 out of 119,012

Life history recorded in the vagino-cervical microbiome

microbiology more details view paper
  • Downloaded 1,089 times
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    • Site-wide: 15,099 out of 119,012
    • In microbiology: 831 out of 9,401
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    • Site-wide: 28,815 out of 119,012
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    • Site-wide: 23,159 out of 119,012

Initial data release and announcement of the Fish10K: Fish 10,000 Genomes Project

genomics more details view paper
  • Downloaded 1,087 times
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    • Site-wide: 15,148 out of 119,012
    • In genomics: 1,670 out of 6,455
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    • Site-wide: 25,124 out of 119,012

Effect of large-scale testing platform in prevention and control of the COVID-19 pandemic: an empirical study with a novel numerical model

epidemiology more details view paper
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    • In epidemiology: 894 out of 4,678
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    • Site-wide: 22,397 out of 119,012

The Trans-omics Landscape of COVID-19

infectious diseases more details view paper
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    • Site-wide: 16,238 out of 119,012
    • In infectious diseases: 1,279 out of 3,611
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    • Site-wide: 6,687 out of 119,012

Over 50000 metagenomically assembled draft genomes for the human oral microbiome reveal new taxa

microbiology more details view paper
  • Downloaded 992 times
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    • Site-wide: 17,391 out of 119,012
    • In microbiology: 947 out of 9,401
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    • Site-wide: 13,203 out of 119,012

Massively parallel quantification of CRISPR editing in cells by TRAP-seq enables better design of Cas9, ABE, CBE gRNAs of high efficiency and accuracy

systems biology more details view paper
  • Downloaded 945 times
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    • Site-wide: 18,665 out of 119,012
    • In systems biology: 408 out of 2,652
  • Year to date:
    • Site-wide: 6,476 out of 119,012
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    • Site-wide: 15,896 out of 119,012

LFMD: detecting low-frequency mutations in high-depth genome sequencing data without molecular tags

bioinformatics more details view paper
  • Downloaded 926 times
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    • Site-wide: 19,241 out of 119,012
    • In bioinformatics: 2,419 out of 9,624
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    • Site-wide: 16,584 out of 119,012

Characterization of Microbial Co-infections in the Respiratory Tract of hospitalized COVID-19 patients

infectious diseases more details view paper
  • Downloaded 918 times
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    • Site-wide: 19,472 out of 119,012
    • In infectious diseases: 1,381 out of 3,611
  • Year to date:
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    • Site-wide: 11,757 out of 119,012

TGS-GapCloser: fast and accurately passing through the Bermuda in large genome using error-prone third-generation long reads

bioinformatics more details view paper
  • Downloaded 874 times
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    • Site-wide: 20,898 out of 119,012
    • In bioinformatics: 2,607 out of 9,624
  • Year to date:
    • Site-wide: 9,674 out of 119,012
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    • Site-wide: 12,139 out of 119,012

Intra-host Variation and Evolutionary Dynamics of SARS-CoV-2 Population in COVID-19 Patients

genomics more details view paper
  • Downloaded 855 times
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    • In genomics: 2,197 out of 6,455
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    • Site-wide: 18,773 out of 119,012

Integration of gut microbiome, host biomarkers, and urine metabolome data reveals networks of interactions associated with distinct clinical phenotypes

microbiology more details view paper
  • Downloaded 821 times
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    • Site-wide: 22,902 out of 119,012
    • In microbiology: 1,290 out of 9,401
  • Year to date:
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    • Site-wide: 41,593 out of 119,012

Three genomes of Osteoglossidae shed light on ancient teleost evolution

genomics more details view paper
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    • In genomics: 2,399 out of 6,455
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Development of Coupling Controlled Polymerizations by Adapter-ligation in Mate-pair Sequencing for Detection of Various Genomic Variants in One Single Assay

genomics more details view paper
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    • Site-wide: 24,564 out of 119,012
    • In genomics: 2,408 out of 6,455
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    • Site-wide: 49,242 out of 119,012

Identification of gut microbiome markers for schizophrenia delineates a potential role of Streptococcus

microbiology more details view paper
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    • In microbiology: 1,435 out of 9,401
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    • Site-wide: 24,169 out of 119,012

Enhance genome editing efficiency and specificity by a quick CRISPR/Cas9 system

genetics more details view paper
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    • Site-wide: 25,271 out of 119,012
    • In genetics: 1,309 out of 5,150
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    • Site-wide: 31,033 out of 119,012

Single-cell regulatory landscape and disease vulnerability map of adult Macaque cortex

neuroscience more details view paper
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    • Site-wide: 25,746 out of 119,012
    • In neuroscience: 3,559 out of 18,703
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    • Site-wide: 8,537 out of 119,012
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    • Site-wide: 55,622 out of 119,012

Age-dependent sexual dimorphism in the adult human gut microbiota

genomics more details view paper
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    • Site-wide: 27,876 out of 119,012
    • In genomics: 2,630 out of 6,455
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    • Site-wide: 47,744 out of 119,012

Single cell atlas of domestic pig brain illuminates the conservation and divergence of cell types at spatial and species levels

bioinformatics more details view paper
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    • Site-wide: 28,393 out of 119,012
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A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

genomics more details view paper
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    • Site-wide: 28,553 out of 119,012
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Towards Practical and Robust DNA-based Data Archiving by Codec System Named ‘Yin-Yang’

synthetic biology more details view paper
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    • In synthetic biology: 384 out of 952
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    • Site-wide: 35,088 out of 119,012

Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome

genomics more details view paper
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    • In genomics: 2,740 out of 6,455
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    • Site-wide: 81,274 out of 119,012

Haplotype-Resolved Assembly for Synthetic Long Reads Using a Trio-Binning Strategy

bioinformatics more details view paper
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    • Site-wide: 15,302 out of 119,012

SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

bioinformatics more details view paper
  • Downloaded 594 times
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Dynamic chromosome rearrangements of the white-spotted bamboo shark shed light on cartilaginous fish diversification mechanisms

genomics more details view paper
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    • Site-wide: 31,501 out of 119,012

Sequencing of Panax notoginseng genome reveals genes involved in disease resistance and ginsenoside biosynthesis

genomics more details view paper
  • Downloaded 587 times
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    • Site-wide: 64,927 out of 119,012

Intratumor Heterogeneity and Evolution of Colorectal Cancer

genetics more details view paper
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    • In genetics: 1,833 out of 5,150
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    • Site-wide: 43,880 out of 119,012

PALM-Seq: simultaneous sequencing of cell-free long RNA and small RNA

molecular biology more details view paper
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Population Bottlenecks and Intra-host Evolution during Human-to-Human Transmission of SARS-CoV-2Population Bottlenecks and Intra-host Evolution during Human-to-Human Transmission of SARS-CoV-2

genetics more details view paper
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    • Site-wide: 7,211 out of 119,012

De novo assembly of the Mongolian gerbil genome and transcriptome

genomics more details view paper
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    • Site-wide: 52,126 out of 119,012

Time-series plasma cell-free DNA analysis reveals disease severity of COVID-19 patients

epidemiology more details view paper
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Nationwide population genetic screening improves outcomes of newborn screening for hearing loss in China

genetics more details view paper
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Single cell chromatin accessibility of the developmental cephalochordate

developmental biology more details view paper
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M-GWAS for the gut microbiome in Chinese adults illuminates on complex diseases

genetics more details view paper
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    • Site-wide: 24,494 out of 119,012

Integrated multi-omics analysis to study the effects of simulated weightlessness on rhesus macaques (Macaca mulatta)

immunology more details view paper
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Single cell atlas of trisomy 21 cerebral cortex

neuroscience more details view paper
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Genomic analyses reveal the origin of domestic ducks and identify different genetic underpinnings of wild ducks

genomics more details view paper
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DNB-Based On-Chip Motif Finding (DocMF): a High-Throughput Method to Profile Different Types of Protein-DNA Interactions

molecular biology more details view paper
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The female urinary microbiota in relation to the reproductive tract microbiota

microbiology more details view paper
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Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

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Sequencing of the MHC region defines HLA-DQA1 as the major independent risk for anti-citrullinated protein antibodies (ACPA)-positive rheumatoid arthritis in Han population

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New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin

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Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater

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Complete chloroplast genomes of 14 mangroves: phylogenetic and genomic comparative analyses

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Slicing the genome of star-fruit (Averrhoa carambola L.)

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Recovered and dead outcome patients caused by influenza A (H7N9) virus infection show different pro-inflammatory cytokine dynamics during disease progress and its application in real-time prognosis

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Draft Genomes of two Artocarpus plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

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Inter-determination of blood metabolite levels and gut microbiome supported by Mendelian randomization

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stLFRsv: a germline SV analysis pipeline using co-barcoded reads

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Genome sequencing combining prenatal ultrasound in the evaluation of fetal CNS structural anomalies

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CNSA: a data repository for archiving omics data

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Comparative analysis of clonal evolution among patients with right-sided colon cancer, left-sided colon cancer and rectal cancer

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Personalized vagino-cervical microbiome dynamics after oral probiotics

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Independent domestications shape the genetic pattern of a reproductive isolation system in rice

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