Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 66,889 bioRxiv papers from 294,495 authors.

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Preprints

Slicing the genome of star-fruit (Averrhoa carambola L.)

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Efficient long single molecule sequencing for cost effective and accurate sequencing, haplotyping, and de novo assembly

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Construction of the third generation Zea mays haplotype map

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A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling

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  • Site-wide: 282 out of 66,916
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  • Site-wide: 21 out of 66,916

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

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Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood

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Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

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  • In genomics: 797 out of 4,551
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A multi-omic cohort as a reference point for promoting a healthy human gut microbiome

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  • In microbiology: 252 out of 5,388
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  • Site-wide: 1,533 out of 66,916

Circularization of genes and chromosome by CRISPR in human cells

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Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

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  • In developmental biology: 142 out of 1,987
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  • Site-wide: 5,779 out of 66,916
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  • Site-wide: 29,594 out of 66,916

PIRD: Pan immune repertoire database

• Downloaded 898 times
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  • In immunology: 153 out of 1,705
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  • Site-wide: 5,948 out of 66,916
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  • Site-wide: 17,963 out of 66,916

Recent origin of an XX/XY sex-determination system in the ancient plant lineage Ginkgo biloba

• Downloaded 897 times
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  • In evolutionary biology: 590 out of 4,447
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  • Site-wide: 17,580 out of 66,916

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

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  • In microbiology: 454 out of 5,388
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3′ Branch Ligation: A Novel Method to Ligate Non-Complementary DNA to Recessed or Internal 3′ OH Ends in DNA or RNA

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  • In molecular biology: 306 out of 2,138
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  • Site-wide: 6,797 out of 66,916
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  • Site-wide: 21,913 out of 66,916

Life history recorded in the vagino-cervical microbiome

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  • In microbiology: 529 out of 5,388
• Year to date:
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  • Site-wide: 11,200 out of 66,916

Age-dependent sexual dimorphism in the adult human gut microbiota

• Downloaded 582 times
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  • In genomics: 2,114 out of 4,551
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  • Site-wide: 27,270 out of 66,916

Initial data release and announcement of the Fish10K: Fish 10,000 Genomes Project

• Downloaded 581 times
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  • In genomics: 2,117 out of 4,551
• Year to date:
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  • Site-wide: 7,613 out of 66,916

LFMD: detecting low-frequency mutations in high-depth genome sequencing data without molecular tags

• Downloaded 580 times
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  • Site-wide: 17,244 out of 66,916
  • In bioinformatics: 2,632 out of 6,604
• Year to date:
  • Site-wide: 4,903 out of 66,916
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  • Site-wide: 4,658 out of 66,916

Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome

• Downloaded 556 times
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  • Site-wide: 18,291 out of 66,916
  • In genomics: 2,209 out of 4,551
• Year to date:
  • Site-wide: 5,290 out of 66,916
• Since beginning of last month:
  • Site-wide: 15,273 out of 66,916

Integration of gut microbiome, host biomarkers, and urine metabolome data reveals networks of interactions associated with distinct clinical phenotypes

• Downloaded 546 times
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  • Site-wide: 18,729 out of 66,916
  • In microbiology: 977 out of 5,388
• Year to date:
  • Site-wide: 5,464 out of 66,916
• Since beginning of last month:
  • Site-wide: 16,549 out of 66,916

Development of Coupling Controlled Polymerizations by Adapter-ligation in Mate-pair Sequencing for Detection of Various Genomic Variants in One Single Assay

• Downloaded 537 times
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  • Site-wide: 19,111 out of 66,916
  • In genomics: 2,273 out of 4,551
• Year to date:
  • Site-wide: 10,039 out of 66,916
• Since beginning of last month:
  • Site-wide: 14,340 out of 66,916

A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

• Downloaded 463 times
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  • Site-wide: 22,950 out of 66,916
  • In genomics: 2,539 out of 4,551
• Year to date:
  • Site-wide: 7,129 out of 66,916
• Since beginning of last month:
  • Site-wide: 24,077 out of 66,916

Enhance genome editing efficiency and specificity by a quick CRISPR/Cas9 system

• Downloaded 440 times
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  • Site-wide: 24,364 out of 66,916
  • In genetics: 1,608 out of 3,770
• Year to date:
  • Site-wide: 7,794 out of 66,916
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  • Site-wide: 11,752 out of 66,916

Over 50000 metagenomically assembled draft genomes for the human oral microbiome reveal new taxa

• Downloaded 424 times
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  • In microbiology: 1,439 out of 5,388
• Year to date:
  • Site-wide: 8,298 out of 66,916
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  • Site-wide: 1,020 out of 66,916

De novo assembly of the Mongolian gerbil genome and transcriptome

• Downloaded 422 times
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  • In genomics: 2,706 out of 4,551
• Year to date:
  • Site-wide: 8,371 out of 66,916
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  • Site-wide: 10,535 out of 66,916

Sequencing of Panax notoginseng genome reveals genes involved in disease resistance and ginsenoside biosynthesis

• Downloaded 406 times
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  • Site-wide: 26,690 out of 66,916
  • In genomics: 2,792 out of 4,551
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  • Site-wide: 24,973 out of 66,916
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  • Site-wide: 35,316 out of 66,916

Nationwide population genetic screening improves outcomes of newborn screening for hearing loss in China

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  • In genetics: 2,309 out of 3,770
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  • Site-wide: 24,831 out of 66,916

Dynamic chromosome rearrangements of the white-spotted bamboo shark shed light on cartilaginous fish diversification mechanisms

• Downloaded 280 times
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  • In genomics: 3,426 out of 4,551
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  • Site-wide: 19,701 out of 66,916

Integrated multi-omics analysis to study the effects of simulated weightlessness on rhesus macaques (Macaca mulatta)

• Downloaded 276 times
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  • Site-wide: 38,513 out of 66,916
  • In immunology: 814 out of 1,705
• Year to date:
  • Site-wide: 16,197 out of 66,916
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  • Site-wide: 47,166 out of 66,916

PALM-Seq: simultaneous sequencing of cell-free long RNA and small RNA

• Downloaded 271 times
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  • Site-wide: 39,066 out of 66,916
  • In molecular biology: 1,164 out of 2,138
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  • Site-wide: 11,493 out of 66,916

SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

• Downloaded 234 times
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  • Site-wide: 43,488 out of 66,916
  • In bioinformatics: 5,036 out of 6,604
• Year to date:
  • Site-wide: 20,395 out of 66,916
• Since beginning of last month:
  • Site-wide: 7,020 out of 66,916

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

• Downloaded 230 times
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  • Site-wide: 44,005 out of 66,916
  • In microbiology: 2,987 out of 5,388
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• Since beginning of last month:
  • Site-wide: 45,825 out of 66,916

Sequencing of the MHC region defines HLA-DQA1 as the major independent risk for anti-citrullinated protein antibodies (ACPA)-positive rheumatoid arthritis in Han population

• Downloaded 226 times
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  • Site-wide: 44,468 out of 66,916
  • In genetics: 2,684 out of 3,770
• Year to date:
  • Site-wide: 34,944 out of 66,916
• Since beginning of last month:
  • Site-wide: 61,457 out of 66,916

Shotgun Metagenomics of 361 elderly women reveals gut microbiome change in bone mass loss

• Downloaded 208 times
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  • Site-wide: 46,866 out of 66,916
  • In microbiology: 3,262 out of 5,388
• Year to date:
  • Site-wide: 23,727 out of 66,916
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  • Site-wide: 19,004 out of 66,916

New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin

• Downloaded 201 times
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  • Site-wide: 47,835 out of 66,916
  • In genetics: 2,870 out of 3,770
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  • Site-wide: 46,495 out of 66,916

Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater

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  • Site-wide: 47,812 out of 66,916
  • In genomics: 3,883 out of 4,551
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  • Site-wide: 37,031 out of 66,916

Towards Practical and Robust DNA-based Data Archiving by Codec System Named 'Yin-Yang'

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  • Site-wide: 48,901 out of 66,916
  • In synthetic biology: 581 out of 635
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  • Site-wide: 781 out of 66,916

The Urinary Microbiota in Relation to the Reproductive Tract Microbiota

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  • In microbiology: 3,677 out of 5,388
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  • Site-wide: 46,401 out of 66,916

Recovered and dead outcome patients caused by influenza A (H7N9) virus infection show different pro-inflammatory cytokine dynamics during disease progress and its application in real-time prognosis

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  • Site-wide: 51,187 out of 66,916
  • In immunology: 1,181 out of 1,705
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  • Site-wide: 57,923 out of 66,916

TGS-GapCloser: fast and accurately passing through the Bermuda in large genome using error-prone third-generation long reads

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  • In bioinformatics: 5,605 out of 6,604
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  • Site-wide: 900 out of 66,916

M-GWAS for the gut microbiome in Chinese adults illuminates on complex diseases

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  • Site-wide: 19,606 out of 66,916

DNB-Based On-Chip Motif Finding (DocMF): a High-Throughput Method to Profile Different Types of Protein-DNA Interactions

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  • Site-wide: 58,943 out of 66,916
  • In molecular biology: 1,834 out of 2,138
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  • Site-wide: 41,180 out of 66,916
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  • Site-wide: 1,641 out of 66,916

Complete chloroplast genomes of 14 mangroves: phylogenetic and genomic comparative analyses

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  • Site-wide: 63,375 out of 66,916
  • In genomics: 4,420 out of 4,551
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  • Site-wide: 53,974 out of 66,916
• Since beginning of last month:
  • Site-wide: 29,512 out of 66,916