Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,572 bioRxiv papers from 308,082 authors.

Author: Xun Xu

  • Most recently observed institution: Institute for Stem cell and Regeneration, Chinese Academy of Sciences

Rankings

  • All-time downloads: 36,416 (rank: 487 out of 308,082)
  • Categories:
    • bioinformatics: 5,322 (rank: 1,134 out of 26,832)
    • developmental biology: 1,092 (rank: 1,470 (tie) out of 11,813)
    • evolutionary biology: 971 (rank: 3,674 (tie) out of 16,543)
    • genetics: 1,478 (rank: 8,456 (tie) out of 30,526)
    • genomics: 19,267 (rank: 362 out of 34,851)
    • immunology: 1,445 (rank: 1,117 (tie) out of 14,768)
    • microbiology: 5,153 (rank: 170 out of 31,909)
    • molecular biology: 1,302 (rank: 1,663 out of 15,064)
    • neuroscience: 149 (rank: 45,615 (tie) out of 52,027)
    • synthetic biology: 237 (rank: 2,847 (tie) out of 3,083)

Downloads per author, site-wide

Preprints

Three genomes of Osteoglossidae shed light on ancient teleost evolution

genomics more details view paper

No bioRxiv download data for this paper yet.

Intratumor Heterogeneity and Evolution of Colorectal Cancer

genetics more details view paper

No bioRxiv download data for this paper yet.

Efficient long single molecule sequencing for cost effective and accurate sequencing, haplotyping, and de novo assembly

genomics more details view paper
  • Downloaded 4,993 times
  • Download rankings, all-time:
    • Site-wide: 460 out of 70,572
    • In genomics: 117 out of 4,714
  • Year to date:
    • Site-wide: 5,824 out of 70,572
  • Since beginning of last month:
    • Site-wide: 4,137 out of 70,572

Construction of the third generation Zea mays haplotype map

bioinformatics more details view paper
  • Downloaded 3,959 times
  • Download rankings, all-time:
    • Site-wide: 735 out of 70,572
    • In bioinformatics: 145 out of 6,912
  • Year to date:
    • Site-wide: 25,365 out of 70,572
  • Since beginning of last month:
    • Site-wide: 25,460 out of 70,572

A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling

genomics more details view paper
  • Downloaded 3,018 times
  • Download rankings, all-time:
    • Site-wide: 1,239 out of 70,572
    • In genomics: 283 out of 4,714
  • Year to date:
    • Site-wide: 1,155 out of 70,572
  • Since beginning of last month:
    • Site-wide: 585 out of 70,572

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

genomics more details view paper
  • Downloaded 2,305 times
  • Download rankings, all-time:
    • Site-wide: 2,007 out of 70,572
    • In genomics: 429 out of 4,714
  • Year to date:
    • Site-wide: 18,346 out of 70,572
  • Since beginning of last month:
    • Site-wide: 20,604 out of 70,572

Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood

genomics more details view paper
  • Downloaded 1,448 times
  • Download rankings, all-time:
    • Site-wide: 4,461 out of 70,572
    • In genomics: 801 out of 4,714
  • Year to date:
    • Site-wide: 17,062 out of 70,572
  • Since beginning of last month:
    • Site-wide: 8,565 out of 70,572

Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

genomics more details view paper
  • Downloaded 1,425 times
  • Download rankings, all-time:
    • Site-wide: 4,596 out of 70,572
    • In genomics: 816 out of 4,714
  • Year to date:
    • Site-wide: 12,182 out of 70,572
  • Since beginning of last month:
    • Site-wide: 28,686 out of 70,572

A multi-omic cohort as a reference point for promoting a healthy human gut microbiome

microbiology more details view paper
  • Downloaded 1,208 times
  • Download rankings, all-time:
    • Site-wide: 6,036 out of 70,572
    • In microbiology: 227 out of 5,728
  • Year to date:
    • Site-wide: 4,382 out of 70,572
  • Since beginning of last month:
    • Site-wide: 5,963 out of 70,572

Circularization of genes and chromosome by CRISPR in human cells

genomics more details view paper
  • Downloaded 1,126 times
  • Download rankings, all-time:
    • Site-wide: 6,806 out of 70,572
    • In genomics: 1,104 out of 4,714
  • Year to date:
    • Site-wide: 30,901 out of 70,572
  • Since beginning of last month:
    • Site-wide: 16,091 out of 70,572

Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

developmental biology more details view paper
  • Downloaded 1,092 times
  • Download rankings, all-time:
    • Site-wide: 7,160 out of 70,572
    • In developmental biology: 151 out of 2,110
  • Year to date:
    • Site-wide: 41,005 out of 70,572
  • Since beginning of last month:
    • Site-wide: 22,751 out of 70,572

PIRD: Pan immune repertoire database

immunology more details view paper
  • Downloaded 966 times
  • Download rankings, all-time:
    • Site-wide: 8,730 out of 70,572
    • In immunology: 146 out of 1,819
  • Year to date:
    • Site-wide: 11,193 out of 70,572
  • Since beginning of last month:
    • Site-wide: 7,087 out of 70,572

Recent origin of an XX/XY sex-determination system in the ancient plant lineage Ginkgo biloba

evolutionary biology more details view paper
  • Downloaded 940 times
  • Download rankings, all-time:
    • Site-wide: 9,157 out of 70,572
    • In evolutionary biology: 573 out of 4,623
  • Year to date:
    • Site-wide: 7,701 out of 70,572
  • Since beginning of last month:
    • Site-wide: 16,892 out of 70,572

A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

microbiology more details view paper
  • Downloaded 877 times
  • Download rankings, all-time:
    • Site-wide: 10,185 out of 70,572
    • In microbiology: 443 out of 5,728
  • Year to date:
    • Site-wide: 12,279 out of 70,572
  • Since beginning of last month:
    • Site-wide: 11,068 out of 70,572

3′ Branch Ligation: A Novel Method to Ligate Non-Complementary DNA to Recessed or Internal 3′ OH Ends in DNA or RNA

molecular biology more details view paper
  • Downloaded 859 times
  • Download rankings, all-time:
    • Site-wide: 10,545 out of 70,572
    • In molecular biology: 313 out of 2,266
  • Year to date:
    • Site-wide: 8,685 out of 70,572
  • Since beginning of last month:
    • Site-wide: 38,367 out of 70,572

Life history recorded in the vagino-cervical microbiome

microbiology more details view paper
  • Downloaded 843 times
  • Download rankings, all-time:
    • Site-wide: 10,883 out of 70,572
    • In microbiology: 477 out of 5,728
  • Year to date:
    • Site-wide: 3,273 out of 70,572
  • Since beginning of last month:
    • Site-wide: 9,812 out of 70,572

Initial data release and announcement of the Fish10K: Fish 10,000 Genomes Project

genomics more details view paper
  • Downloaded 707 times
  • Download rankings, all-time:
    • Site-wide: 14,113 out of 70,572
    • In genomics: 1,881 out of 4,714
  • Year to date:
    • Site-wide: 4,834 out of 70,572
  • Since beginning of last month:
    • Site-wide: 3,209 out of 70,572

LFMD: detecting low-frequency mutations in high-depth genome sequencing data without molecular tags

bioinformatics more details view paper
  • Downloaded 639 times
  • Download rankings, all-time:
    • Site-wide: 16,312 out of 70,572
    • In bioinformatics: 2,516 out of 6,912
  • Year to date:
    • Site-wide: 4,234 out of 70,572
  • Since beginning of last month:
    • Site-wide: 17,430 out of 70,572

Age-dependent sexual dimorphism in the adult human gut microbiota

genomics more details view paper
  • Downloaded 595 times
  • Download rankings, all-time:
    • Site-wide: 18,028 out of 70,572
    • In genomics: 2,187 out of 4,714
  • Year to date:
    • Site-wide: 68,287 out of 70,572
  • Since beginning of last month:
    • Site-wide: 36,446 out of 70,572

Integration of gut microbiome, host biomarkers, and urine metabolome data reveals networks of interactions associated with distinct clinical phenotypes

microbiology more details view paper
  • Downloaded 584 times
  • Download rankings, all-time:
    • Site-wide: 18,478 out of 70,572
    • In microbiology: 956 out of 5,728
  • Year to date:
    • Site-wide: 30,249 out of 70,572
  • Since beginning of last month:
    • Site-wide: 11,241 out of 70,572

Development of Coupling Controlled Polymerizations by Adapter-ligation in Mate-pair Sequencing for Detection of Various Genomic Variants in One Single Assay

genomics more details view paper
  • Downloaded 580 times
  • Download rankings, all-time:
    • Site-wide: 18,699 out of 70,572
    • In genomics: 2,240 out of 4,714
  • Year to date:
    • Site-wide: 64,668 out of 70,572
  • Since beginning of last month:
    • Site-wide: 8,161 out of 70,572

Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome

genomics more details view paper
  • Downloaded 573 times
  • Download rankings, all-time:
    • Site-wide: 18,987 out of 70,572
    • In genomics: 2,264 out of 4,714
  • Year to date:
    • Site-wide: 54,961 out of 70,572
  • Since beginning of last month:
    • Site-wide: 37,569 out of 70,572

Over 50000 metagenomically assembled draft genomes for the human oral microbiome reveal new taxa

microbiology more details view paper
  • Downloaded 521 times
  • Download rankings, all-time:
    • Site-wide: 21,489 out of 70,572
    • In microbiology: 1,154 out of 5,728
  • Year to date:
    • Site-wide: 6,953 out of 70,572
  • Since beginning of last month:
    • Site-wide: 4,823 out of 70,572

Enhance genome editing efficiency and specificity by a quick CRISPR/Cas9 system

genetics more details view paper
  • Downloaded 510 times
  • Download rankings, all-time:
    • Site-wide: 22,088 out of 70,572
    • In genetics: 1,469 out of 3,911
  • Year to date:
    • Site-wide: 6,604 out of 70,572
  • Since beginning of last month:
    • Site-wide: 9,856 out of 70,572

A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

genomics more details view paper
  • Downloaded 493 times
  • Download rankings, all-time:
    • Site-wide: 23,021 out of 70,572
    • In genomics: 2,548 out of 4,714
  • Year to date:
    • Site-wide: 11,867 out of 70,572
  • Since beginning of last month:
    • Site-wide: 40,237 out of 70,572

De novo assembly of the Mongolian gerbil genome and transcriptome

genomics more details view paper
  • Downloaded 445 times
  • Download rankings, all-time:
    • Site-wide: 26,087 out of 70,572
    • In genomics: 2,756 out of 4,714
  • Year to date:
    • Site-wide: 21,728 out of 70,572
  • Since beginning of last month:
    • Site-wide: 25,355 out of 70,572

Identification of gut microbiome markers for schizophrenia delineates a potential role of Streptococcus

microbiology more details view paper
  • Downloaded 440 times
  • Download rankings, all-time:
    • Site-wide: 26,452 out of 70,572
    • In microbiology: 1,496 out of 5,728
  • Year to date:
    • Site-wide: 30,577 out of 70,572
  • Since beginning of last month:
    • Site-wide: 4,856 out of 70,572

Sequencing of Panax notoginseng genome reveals genes involved in disease resistance and ginsenoside biosynthesis

genomics more details view paper
  • Downloaded 421 times
  • Download rankings, all-time:
    • Site-wide: 27,751 out of 70,572
    • In genomics: 2,885 out of 4,714
  • Year to date:
    • Site-wide: 62,891 out of 70,572
  • Since beginning of last month:
    • Site-wide: 36,524 out of 70,572

Nationwide population genetic screening improves outcomes of newborn screening for hearing loss in China

genetics more details view paper
  • Downloaded 313 times
  • Download rankings, all-time:
    • Site-wide: 37,445 out of 70,572
    • In genetics: 2,304 out of 3,911
  • Year to date:
    • Site-wide: 55,104 out of 70,572
  • Since beginning of last month:
    • Site-wide: 18,827 out of 70,572

Dynamic chromosome rearrangements of the white-spotted bamboo shark shed light on cartilaginous fish diversification mechanisms

genomics more details view paper
  • Downloaded 312 times
  • Download rankings, all-time:
    • Site-wide: 37,576 out of 70,572
    • In genomics: 3,445 out of 4,714
  • Year to date:
    • Site-wide: 69,029 out of 70,572
  • Since beginning of last month:
    • Site-wide: 11,629 out of 70,572

PALM-Seq: simultaneous sequencing of cell-free long RNA and small RNA

molecular biology more details view paper
  • Downloaded 308 times
  • Download rankings, all-time:
    • Site-wide: 37,956 out of 70,572
    • In molecular biology: 1,136 out of 2,266
  • Year to date:
    • Site-wide: 41,239 out of 70,572
  • Since beginning of last month:
    • Site-wide: 10,419 out of 70,572

Integrated multi-omics analysis to study the effects of simulated weightlessness on rhesus macaques (Macaca mulatta)

immunology more details view paper
  • Downloaded 295 times
  • Download rankings, all-time:
    • Site-wide: 39,375 out of 70,572
    • In immunology: 848 out of 1,819
  • Year to date:
    • Site-wide: 64,931 out of 70,572
  • Since beginning of last month:
    • Site-wide: 27,051 out of 70,572

SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

bioinformatics more details view paper
  • Downloaded 274 times
  • Download rankings, all-time:
    • Site-wide: 41,824 out of 70,572
    • In bioinformatics: 4,915 out of 6,912
  • Year to date:
    • Site-wide: 16,342 out of 70,572
  • Since beginning of last month:
    • Site-wide: 13,141 out of 70,572

Advanced Whole Genome Sequencing Using a Complete PCR-free Massively Parallel Sequencing (MPS) Workflow

genomics more details view paper
  • Downloaded 257 times
  • Download rankings, all-time:
    • Site-wide: 43,966 out of 70,572
    • In genomics: 3,769 out of 4,714
  • Year to date:
    • Site-wide: 1,040 out of 70,572
  • Since beginning of last month:
    • Site-wide: 939 out of 70,572

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

microbiology more details view paper
  • Downloaded 246 times
  • Download rankings, all-time:
    • Site-wide: 45,395 out of 70,572
    • In microbiology: 3,062 out of 5,728
  • Year to date:
    • Site-wide: 43,912 out of 70,572
  • Since beginning of last month:
    • Site-wide: 34,895 out of 70,572

Towards Practical and Robust DNA-based Data Archiving by Codec System Named 'Yin-Yang'

synthetic biology more details view paper
  • Downloaded 237 times
  • Download rankings, all-time:
    • Site-wide: 46,559 out of 70,572
    • In synthetic biology: 591 out of 670
  • Year to date:
    • Site-wide: 18,152 out of 70,572
  • Since beginning of last month:
    • Site-wide: 8,455 out of 70,572

Sequencing of the MHC region defines HLA-DQA1 as the major independent risk for anti-citrullinated protein antibodies (ACPA)-positive rheumatoid arthritis in Han population

genetics more details view paper
  • Downloaded 237 times
  • Download rankings, all-time:
    • Site-wide: 46,513 out of 70,572
    • In genetics: 2,788 out of 3,911
  • Year to date:
    • Site-wide: 62,109 out of 70,572
  • Since beginning of last month:
    • Site-wide: 46,147 out of 70,572

Single cell atlas of domestic pig brain illuminates the conservation and divergence of cell types at spatial and species levels

bioinformatics more details view paper
  • Downloaded 230 times
  • Download rankings, all-time:
    • Site-wide: 47,537 out of 70,572
    • In bioinformatics: 5,355 out of 6,912
  • Year to date:
    • Site-wide: 7,086 out of 70,572
  • Since beginning of last month:
    • Site-wide: 643 out of 70,572

Shotgun Metagenomics of 361 elderly women reveals gut microbiome change in bone mass loss

microbiology more details view paper
  • Downloaded 230 times
  • Download rankings, all-time:
    • Site-wide: 47,503 out of 70,572
    • In microbiology: 3,271 out of 5,728
  • Year to date:
    • Site-wide: 29,366 out of 70,572
  • Since beginning of last month:
    • Site-wide: 28,990 out of 70,572

TGS-GapCloser: fast and accurately passing through the Bermuda in large genome using error-prone third-generation long reads

bioinformatics more details view paper
  • Downloaded 220 times
  • Download rankings, all-time:
    • Site-wide: 48,843 out of 70,572
    • In bioinformatics: 5,465 out of 6,912
  • Year to date:
    • Site-wide: 6,335 out of 70,572
  • Since beginning of last month:
    • Site-wide: 15,139 out of 70,572

Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater

genomics more details view paper
  • Downloaded 217 times
  • Download rankings, all-time:
    • Site-wide: 49,328 out of 70,572
    • In genomics: 3,996 out of 4,714
  • Year to date:
    • Site-wide: 45,342 out of 70,572
  • Since beginning of last month:
    • Site-wide: 38,074 out of 70,572

New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin

genetics more details view paper
  • Downloaded 212 times
  • Download rankings, all-time:
    • Site-wide: 49,924 out of 70,572
    • In genetics: 2,969 out of 3,911
  • Year to date:
    • Site-wide: 61,264 out of 70,572
  • Since beginning of last month:
    • Site-wide: 48,528 out of 70,572

M-GWAS for the gut microbiome in Chinese adults illuminates on complex diseases

genetics more details view paper
  • Downloaded 206 times
  • Download rankings, all-time:
    • Site-wide: 50,824 out of 70,572
    • In genetics: 3,010 out of 3,911
  • Year to date:
    • Site-wide: 15,072 out of 70,572
  • Since beginning of last month:
    • Site-wide: 19,805 out of 70,572

The Urinary Microbiota in Relation to the Reproductive Tract Microbiota

microbiology more details view paper
  • Downloaded 204 times
  • Download rankings, all-time:
    • Site-wide: 51,163 out of 70,572
    • In microbiology: 3,628 out of 5,728
  • Year to date:
    • Site-wide: 41,052 out of 70,572
  • Since beginning of last month:
    • Site-wide: 21,395 out of 70,572

Recovered and dead outcome patients caused by influenza A (H7N9) virus infection show different pro-inflammatory cytokine dynamics during disease progress and its application in real-time prognosis

immunology more details view paper
  • Downloaded 184 times
  • Download rankings, all-time:
    • Site-wide: 54,022 out of 70,572
    • In immunology: 1,271 out of 1,819
  • Year to date:
    • Site-wide: 69,106 out of 70,572
  • Since beginning of last month:
    • Site-wide: 65,383 out of 70,572

Single cell atlas of trisomy 21 cerebral cortex

neuroscience more details view paper
  • Downloaded 149 times
  • Download rankings, all-time:
    • Site-wide: 59,425 out of 70,572
    • In neuroscience: 10,614 out of 12,685
  • Year to date:
    • Site-wide: 432 out of 70,572
  • Since beginning of last month:
    • Site-wide: None out of 70,572

DNB-Based On-Chip Motif Finding (DocMF): a High-Throughput Method to Profile Different Types of Protein-DNA Interactions

molecular biology more details view paper
  • Downloaded 135 times
  • Download rankings, all-time:
    • Site-wide: 61,445 out of 70,572
    • In molecular biology: 1,943 out of 2,266
  • Year to date:
    • Site-wide: None out of 70,572
  • Since beginning of last month:
    • Site-wide: 26,017 out of 70,572

Draft Genomes of two Artocarpus plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

genomics more details view paper
  • Downloaded 124 times
  • Download rankings, all-time:
    • Site-wide: 62,982 out of 70,572
    • In genomics: 4,505 out of 4,714
  • Year to date:
    • Site-wide: 17,468 out of 70,572
  • Since beginning of last month:
    • Site-wide: 2,003 out of 70,572

Complete chloroplast genomes of 14 mangroves: phylogenetic and genomic comparative analyses

genomics more details view paper
  • Downloaded 119 times
  • Download rankings, all-time:
    • Site-wide: 63,628 out of 70,572
    • In genomics: 4,523 out of 4,714
  • Year to date:
    • Site-wide: 19,043 out of 70,572
  • Since beginning of last month:
    • Site-wide: 17,609 out of 70,572

Slicing the genome of star-fruit (Averrhoa carambola L.)

genomics more details view paper
  • Downloaded 109 times
  • Download rankings, all-time:
    • Site-wide: 64,908 out of 70,572
    • In genomics: 4,556 out of 4,714
  • Year to date:
    • Site-wide: 15,125 out of 70,572
  • Since beginning of last month:
    • Site-wide: 11,535 out of 70,572

Independent domestications shape the genetic pattern of a reproductive isolation system in rice

evolutionary biology more details view paper
  • Downloaded 31 times
  • Download rankings, all-time:
    • Site-wide: 69,388 out of 70,572
    • In evolutionary biology: 4,563 out of 4,623
  • Year to date:
    • Site-wide: 4,217 out of 70,572
  • Since beginning of last month:
    • Site-wide: None out of 70,572

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News