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Author: Xun Xu

  • Most recently observed institution: Institute for Stem cell and Regeneration, Chinese Academy of Sciences

Rankings

  • All-time downloads: 44,316 (rank: 550 out of 334,426)
  • Categories:
    • bioinformatics: 5,739 (rank: 1,125 out of 28,790)
    • cell biology: 634 (rank: 7,066 (tie) out of 23,794)
    • developmental biology: 1,251 (rank: 1,368 (tie) out of 12,955)
    • evolutionary biology: 1,065 (rank: 3,622 (tie) out of 17,649)
    • genetics: 1,984 (rank: 7,040 (tie) out of 32,426)
    • genomics: 24,173 (rank: 278 out of 36,847)
    • immunology: 1,564 (rank: 1,232 (tie) out of 16,639)
    • microbiology: 5,755 (rank: 488 out of 35,516)
    • molecular biology: 1,504 (rank: 1,503 out of 16,651)
    • neuroscience: 291 (rank: 38,165 (tie) out of 56,522)
    • synthetic biology: 356 (rank: 2,751 (tie) out of 3,423)

Downloads per author, site-wide

Preprints

Efficient long single molecule sequencing for cost effective and accurate sequencing, haplotyping, and de novo assembly

genomics more details view paper
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Construction of the third generation Zea mays haplotype map

bioinformatics more details view paper
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A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling

genomics more details view paper
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    • In genomics: 260 out of 5,066
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Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

genomics more details view paper
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    • In genomics: 448 out of 5,066
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CoolMPS™: Advanced massively parallel sequencing using antibodies specific to each natural nucleobase

genomics more details view paper
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Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood

genomics more details view paper
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Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

genomics more details view paper
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A multi-omic cohort as a reference point for promoting a healthy human gut microbiome

microbiology more details view paper
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    • In microbiology: 266 out of 6,386
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    • Site-wide: 9,477 out of 77,122
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    • Site-wide: 9,666 out of 77,122

Circularization of genes and chromosome by CRISPR in human cells

genomics more details view paper
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    • In genomics: 1,167 out of 5,066
  • Year to date:
    • Site-wide: 44,241 out of 77,122
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    • Site-wide: 44,325 out of 77,122

Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

developmental biology more details view paper
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    • In developmental biology: 151 out of 2,319
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PIRD: Pan immune repertoire database

immunology more details view paper
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    • In immunology: 164 out of 2,071
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Recent origin of an XX/XY sex-determination system in the ancient plant lineage Ginkgo biloba

evolutionary biology more details view paper
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    • Site-wide: 9,203 out of 77,122
    • In evolutionary biology: 538 out of 4,915
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A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

microbiology more details view paper
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    • Site-wide: 10,105 out of 77,122
    • In microbiology: 478 out of 6,386
  • Year to date:
    • Site-wide: 14,071 out of 77,122
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Advanced Whole Genome Sequencing Using a Complete PCR-free Massively Parallel Sequencing (MPS) Workflow

genomics more details view paper
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    • In genomics: 1,553 out of 5,066
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3′ Branch Ligation: A Novel Method to Ligate Non-Complementary DNA to Recessed or Internal 3′ OH Ends in DNA or RNA

molecular biology more details view paper
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    • In molecular biology: 334 out of 2,538
  • Year to date:
    • Site-wide: 19,822 out of 77,122
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    • Site-wide: 20,361 out of 77,122

Life history recorded in the vagino-cervical microbiome

microbiology more details view paper
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    • In microbiology: 540 out of 6,386
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Initial data release and announcement of the Fish10K: Fish 10,000 Genomes Project

genomics more details view paper
  • Downloaded 798 times
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    • In genomics: 1,789 out of 5,066
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    • Site-wide: 9,822 out of 77,122
  • Since beginning of last month:
    • Site-wide: 11,613 out of 77,122

LFMD: detecting low-frequency mutations in high-depth genome sequencing data without molecular tags

bioinformatics more details view paper
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    • Site-wide: 15,361 out of 77,122
    • In bioinformatics: 2,414 out of 7,446
  • Year to date:
    • Site-wide: 10,144 out of 77,122
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    • Site-wide: 9,954 out of 77,122

Integration of gut microbiome, host biomarkers, and urine metabolome data reveals networks of interactions associated with distinct clinical phenotypes

microbiology more details view paper
  • Downloaded 656 times
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    • In microbiology: 952 out of 6,386
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Integrated profiling of single cell epigenomic and transcriptomic landscape of Parkinson's disease mouse brain

cell biology more details view paper
  • Downloaded 634 times
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    • Site-wide: 18,707 out of 77,122
    • In cell biology: 792 out of 3,828
  • Year to date:
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    • Site-wide: 374 out of 77,122

Development of Coupling Controlled Polymerizations by Adapter-ligation in Mate-pair Sequencing for Detection of Various Genomic Variants in One Single Assay

genomics more details view paper
  • Downloaded 626 times
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    • Site-wide: 19,039 out of 77,122
    • In genomics: 2,263 out of 5,066
  • Year to date:
    • Site-wide: 30,229 out of 77,122
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    • Site-wide: 23,315 out of 77,122

Age-dependent sexual dimorphism in the adult human gut microbiota

genomics more details view paper
  • Downloaded 618 times
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    • Site-wide: 19,432 out of 77,122
    • In genomics: 2,302 out of 5,066
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Over 50000 metagenomically assembled draft genomes for the human oral microbiome reveal new taxa

microbiology more details view paper
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    • In microbiology: 1,091 out of 6,386
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    • Site-wide: 11,083 out of 77,122

Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome

genomics more details view paper
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    • In genomics: 2,368 out of 5,066
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Identification of gut microbiome markers for schizophrenia delineates a potential role of Streptococcus

microbiology more details view paper
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    • In microbiology: 1,208 out of 6,386
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Enhance genome editing efficiency and specificity by a quick CRISPR/Cas9 system

genetics more details view paper
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    • In genetics: 1,411 out of 4,163
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A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth

genomics more details view paper
  • Downloaded 532 times
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    • Site-wide: 23,778 out of 77,122
    • In genomics: 2,620 out of 5,066
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De novo assembly of the Mongolian gerbil genome and transcriptome

genomics more details view paper
  • Downloaded 493 times
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    • In genomics: 2,776 out of 5,066
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Sequencing of Panax notoginseng genome reveals genes involved in disease resistance and ginsenoside biosynthesis

genomics more details view paper
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    • Site-wide: 27,294 out of 77,122
    • In genomics: 2,847 out of 5,066
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Dynamic chromosome rearrangements of the white-spotted bamboo shark shed light on cartilaginous fish diversification mechanisms

genomics more details view paper
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    • In genomics: 3,356 out of 5,066
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    • Site-wide: 16,909 out of 77,122

PALM-Seq: simultaneous sequencing of cell-free long RNA and small RNA

molecular biology more details view paper
  • Downloaded 370 times
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    • Site-wide: 36,194 out of 77,122
    • In molecular biology: 1,107 out of 2,538
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    • Site-wide: 17,155 out of 77,122

Towards Practical and Robust DNA-based Data Archiving by Codec System Named ‘Yin-Yang’

synthetic biology more details view paper
  • Downloaded 356 times
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    • In synthetic biology: 543 out of 732
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    • Site-wide: 8,655 out of 77,122
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    • Site-wide: 6,239 out of 77,122

Nationwide population genetic screening improves outcomes of newborn screening for hearing loss in China

genetics more details view paper
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    • In genetics: 2,276 out of 4,163
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SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

bioinformatics more details view paper
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TGS-GapCloser: fast and accurately passing through the Bermuda in large genome using error-prone third-generation long reads

bioinformatics more details view paper
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Integrated multi-omics analysis to study the effects of simulated weightlessness on rhesus macaques (Macaca mulatta)

immunology more details view paper
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    • In immunology: 939 out of 2,071
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Single cell atlas of domestic pig brain illuminates the conservation and divergence of cell types at spatial and species levels

bioinformatics more details view paper
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    • In bioinformatics: 5,010 out of 7,446
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Intratumor Heterogeneity and Evolution of Colorectal Cancer

genetics more details view paper
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    • Site-wide: 5,192 out of 77,122

Single cell atlas of trisomy 21 cerebral cortex

neuroscience more details view paper
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    • In neuroscience: 8,010 out of 13,826
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Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

microbiology more details view paper
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Shotgun Metagenomics of 361 elderly women reveals gut microbiome change in bone mass loss

microbiology more details view paper
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Sequencing of the MHC region defines HLA-DQA1 as the major independent risk for anti-citrullinated protein antibodies (ACPA)-positive rheumatoid arthritis in Han population

genetics more details view paper
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M-GWAS for the gut microbiome in Chinese adults illuminates on complex diseases

genetics more details view paper
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Three genomes of Osteoglossidae shed light on ancient teleost evolution

genomics more details view paper
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Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater

genomics more details view paper
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New genetic variants associated with major adverse cardiovascular events in patients with acute coronary syndromes and treated with clopidogrel and aspirin

genetics more details view paper
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Genomic analyses reveal the origin of domestic ducks and identify different genetic underpinnings of wild ducks

genomics more details view paper
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    • In genomics: 4,257 out of 5,066
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DNB-Based On-Chip Motif Finding (DocMF): a High-Throughput Method to Profile Different Types of Protein-DNA Interactions

molecular biology more details view paper
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Multiple approaches for massively parallel sequencing of HCoV-19 (SARS-CoV-2) genomes directly from clinical samples

genomics more details view paper
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Recovered and dead outcome patients caused by influenza A (H7N9) virus infection show different pro-inflammatory cytokine dynamics during disease progress and its application in real-time prognosis

immunology more details view paper
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The Urinary Microbiota in Relation to the Reproductive Tract Microbiota

microbiology more details view paper
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Slicing the genome of star-fruit (Averrhoa carambola L.)

genomics more details view paper
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Draft Genomes of two Artocarpus plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

genomics more details view paper
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Complete chloroplast genomes of 14 mangroves: phylogenetic and genomic comparative analyses

genomics more details view paper
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Single cell chromatin accessibility of the developmental cephalochordate

developmental biology more details view paper
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Independent domestications shape the genetic pattern of a reproductive isolation system in rice

evolutionary biology more details view paper
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