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Author: Stephen Baker

Rankings

  • All-time downloads: 28,469 (rank: 5,469 )
  • Categories:
    • biochemistry: 1,902 (rank: 1,952 (tie) )
    • bioinformatics: 2,722 (rank: 4,985 (tie) )
    • epidemiology: 2,363 (rank: 4,553 (tie) )
    • genomics: 4,243 (rank: 5,650 (tie) )
    • infectious diseases: 9,075 (rank: 4,869 )
    • intensive care and critical care medicine: 1,003 (rank: 883 (tie) )
    • microbiology: 4,783 (rank: 2,852 (tie) )
    • molecular biology: 1,953 (rank: 2,339 (tie) )
    • public and global health: 425 (rank: 6,060 (tie) )

Downloads per author, site-wide

Preprints

Delayed bystander CD8 T cell activation, early immune pathology and persistent dysregulation characterise severe COVID-19

infectious diseases more details view paper
  • Downloaded 2,778 times
  • Download rankings, all-time:
    • Site-wide: 4,653
    • In infectious diseases: 793
  • Year to date:
    • Site-wide: 354
  • Since beginning of last month:
    • Site-wide: 806

High-resolution sweep metagenomics using fast probabilistic inference

bioinformatics more details view paper
  • Downloaded 2,722 times
  • Download rankings, all-time:
    • Site-wide: 4,807
    • In bioinformatics: 515
  • Year to date:
    • Site-wide: 88,600
  • Since beginning of last month:
    • Site-wide: 111,089

Rapid implementation of real-time SARS-CoV-2 sequencing to investigate healthcare-associated COVID-19 infections

infectious diseases more details view paper
  • Downloaded 2,578 times
  • Download rankings, all-time:
    • Site-wide: 5,173
    • In infectious diseases: 843
  • Year to date:
    • Site-wide: 13,815
  • Since beginning of last month:
    • Site-wide: 16,154

Combined point of care nucleic acid and antibody testing for SARS-CoV-2: a prospective cohort study in suspected moderate to severe COVID-19 disease.

infectious diseases more details view paper
  • Downloaded 2,040 times
  • Download rankings, all-time:
    • Site-wide: 7,320
    • In infectious diseases: 1,018
  • Year to date:
    • Site-wide: 20,026
  • Since beginning of last month:
    • Site-wide: 33,622

A blueprint for the implementation of a validated approach for the detection of SARS-Cov2 in clinical samples in academic facilities

molecular biology more details view paper
  • Downloaded 1,953 times
  • Download rankings, all-time:
    • Site-wide: 7,822
    • In molecular biology: 189
  • Year to date:
    • Site-wide: 23,320
  • Since beginning of last month:
    • Site-wide: 21,159

A thermostable, closed, SARS-CoV-2 spike protein trimer.

biochemistry more details view paper
  • Downloaded 1,902 times
  • Download rankings, all-time:
    • Site-wide: 8,147
    • In biochemistry: 157
  • Year to date:
    • Site-wide: 13,901
  • Since beginning of last month:
    • Site-wide: 14,278

Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate

microbiology more details view paper
  • Downloaded 1,515 times
  • Download rankings, all-time:
    • Site-wide: 11,376
    • In microbiology: 640
  • Year to date:
    • Site-wide: 108,568
  • Since beginning of last month:
    • Site-wide: 104,512

Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia.

microbiology more details view paper
  • Downloaded 1,063 times
  • Download rankings, all-time:
    • Site-wide: 19,381
    • In microbiology: 1,095
  • Year to date:
    • Site-wide: 60,593
  • Since beginning of last month:
    • Site-wide: 60,651

Secondary pneumonia in critically ill ventilated patients with COVID-19

intensive care and critical care medicine more details view paper
  • Downloaded 1,003 times
  • Download rankings, all-time:
    • Site-wide: 21,099
    • In intensive care and critical care medicine: 67
  • Year to date:
    • Site-wide: 20,244
  • Since beginning of last month:
    • Site-wide: 34,906

Screening of healthcare workers for SARS-CoV-2 highlights the role of asymptomatic carriage in COVID-19 transmission

infectious diseases more details view paper
  • Downloaded 977 times
  • Download rankings, all-time:
    • Site-wide: 21,827
    • In infectious diseases: 1,764
  • Year to date:
    • Site-wide: 50,981
  • Since beginning of last month:
    • Site-wide: 51,330

Extensive capsule locus variation and large-scale genomic recombination within the Klebsiella pneumoniae clonal complex 258/11.

genomics more details view paper
  • Downloaded 904 times
  • Download rankings, all-time:
    • Site-wide: 24,536
    • In genomics: 2,342
  • Year to date:
    • Site-wide: 120,813
  • Since beginning of last month:
    • Site-wide: 103,413

Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection

genomics more details view paper
  • Downloaded 824 times
  • Download rankings, all-time:
    • Site-wide: 27,886
    • In genomics: 2,570
  • Year to date:
    • Site-wide: 108,703
  • Since beginning of last month:
    • Site-wide: 95,632

Whole genome sequence analysis of Salmonella Typhi isolated in Thailand before and after the introduction of a national immunization program

genomics more details view paper
  • Downloaded 783 times
  • Download rankings, all-time:
    • Site-wide: 29,977
    • In genomics: 2,712
  • Year to date:
    • Site-wide: 57,211
  • Since beginning of last month:
    • Site-wide: 55,858

Whole genome sequencing identifies independent outbreaks of Shigellosis in 2010 and 2011 in La Pampa Province, Argentina

genomics more details view paper
  • Downloaded 690 times
  • Download rankings, all-time:
    • Site-wide: 35,664
    • In genomics: 3,071
  • Year to date:
    • Site-wide: 111,564
  • Since beginning of last month:
    • Site-wide: 114,592

A2B-COVID: A method for evaluating potential SARS-CoV-2 transmission events

epidemiology more details view paper
  • Downloaded 663 times
  • Download rankings, all-time:
    • Site-wide: 37,667
    • In epidemiology: 1,826
  • Year to date:
    • Site-wide: 13,667
  • Since beginning of last month:
    • Site-wide: 25,582

Structure of general-population antibody titer distributions to influenza A virus

epidemiology more details view paper
  • Downloaded 640 times
  • Download rankings, all-time:
    • Site-wide: 39,367
    • In epidemiology: 1,889
  • Year to date:
    • Site-wide: 92,136
  • Since beginning of last month:
    • Site-wide: 87,170

Transmission dynamics and between-species interactions of multidrug-resistant Enterobacteriaceae

epidemiology more details view paper
  • Downloaded 593 times
  • Download rankings, all-time:
    • Site-wide: 43,362
    • In epidemiology: 2,048
  • Year to date:
    • Site-wide: 103,416
  • Since beginning of last month:
    • Site-wide: 86,766

South Asia as a reservoir for the global spread of ciprofloxacin resistant Shigella sonnei

microbiology more details view paper
  • Downloaded 526 times
  • Download rankings, all-time:
    • Site-wide: 50,164
    • In microbiology: 3,172
  • Year to date:
    • Site-wide: 92,939
  • Since beginning of last month:
    • Site-wide: 95,770

Genomic and mobility data reveal mass population movement as a driver of SARS-CoV-2 dissemination and diversity in Bangladesh

public and global health more details view paper
  • Downloaded 425 times
  • Download rankings, all-time:
    • Site-wide: 63,341
    • In public and global health: 789
  • Year to date:
    • Site-wide: 4,106
  • Since beginning of last month:
    • Site-wide: 7,093

A prospective study of risk factors associated with seroprevalence of SARS-CoV-2 antibodies in healthcare workers at a large UK teaching hospital

infectious diseases more details view paper
  • Downloaded 399 times
  • Download rankings, all-time:
    • Site-wide: 67,575
    • In infectious diseases: 3,081
  • Year to date:
    • Site-wide: 34,779
  • Since beginning of last month:
    • Site-wide: 28,416

A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at Pathogenwatch

genomics more details view paper
  • Downloaded 360 times
  • Download rankings, all-time:
    • Site-wide: 74,067
    • In genomics: 5,055
  • Year to date:
    • Site-wide: 38,772
  • Since beginning of last month:
    • Site-wide: 33,574

Spontaneous emergence of azithromycin resistance in independent lineages of Salmonella Typhi in Northern India

genomics more details view paper
  • Downloaded 358 times
  • Download rankings, all-time:
    • Site-wide: 74,564
    • In genomics: 5,064
  • Year to date:
    • Site-wide: 15,490
  • Since beginning of last month:
    • Site-wide: 29,667

Quantifying antimicrobial access and practices for paediatric diarrheal disease in an urban community setting in Southeast Asia

epidemiology more details view paper
  • Downloaded 357 times
  • Download rankings, all-time:
    • Site-wide: 74,773
    • In epidemiology: 3,129
  • Year to date:
    • Site-wide: 121,424
  • Since beginning of last month:
    • Site-wide: 133,475

The virulence of the Cryptococcus neoformans VNIa-5 lineage is highly plastic and associated with isolate background

microbiology more details view paper
  • Downloaded 332 times
  • Download rankings, all-time:
    • Site-wide: 79,391
    • In microbiology: 5,508
  • Year to date:
    • Site-wide: 83,693
  • Since beginning of last month:
    • Site-wide: 83,964

The emergence of azithromycin-resistant Salmonella Typhi in Nepal

infectious diseases more details view paper
  • Downloaded 303 times
  • Download rankings, all-time:
    • Site-wide: 85,378
    • In infectious diseases: 3,482
  • Year to date:
    • Site-wide: 63,449
  • Since beginning of last month:
    • Site-wide: 72,874

Ciprofloxacin facilitates the transfer of XDR plasmids from commensal E. coli into epidemic fluoroquinolone-resistant Shigella sonnei

microbiology more details view paper
  • Downloaded 293 times
  • Download rankings, all-time:
    • Site-wide: 87,332
    • In microbiology: 6,178
  • Year to date:
    • Site-wide: 102,180
  • Since beginning of last month:
    • Site-wide: 127,922

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

microbiology more details view paper
  • Downloaded 291 times
  • Download rankings, all-time:
    • Site-wide: 87,777
    • In microbiology: 6,191
  • Year to date:
    • Site-wide: 32,744
  • Since beginning of last month:
    • Site-wide: 42,188

High-content imaging to phenotype antimicrobial effects on individual bacteria at scale

microbiology more details view paper
  • Downloaded 248 times
  • Download rankings, all-time:
    • Site-wide: 97,140
    • In microbiology: 7,025
  • Year to date:
    • Site-wide: 8,984
  • Since beginning of last month:
    • Site-wide: 34,042

A novel therapeutic antibody screening method using bacterial high-content imaging reveals functional antibody binding phenotypes of Escherichia coli ST131

microbiology more details view paper
  • Downloaded 234 times
  • Download rankings, all-time:
    • Site-wide: 100,294
    • In microbiology: 7,305
  • Year to date:
    • Site-wide: 79,059
  • Since beginning of last month:
    • Site-wide: 90,145

The genetic signatures of Salmonella Typhi carriage in the human gallbladder

microbiology more details view paper
  • Downloaded 221 times
  • Download rankings, all-time:
    • Site-wide: 103,205
    • In microbiology: 7,572
  • Year to date:
    • Site-wide: 118,764
  • Since beginning of last month:
    • Site-wide: 127,697

The genomic epidemiology of multi-drug resistant nontyphoidal Salmonella causing invasive disease in sub-Saharan Africa

genomics more details view paper
  • Downloaded 167 times
  • Download rankings, all-time:
    • Site-wide: 115,126
    • In genomics: 6,430
  • Year to date:
    • Site-wide: 34,068
  • Since beginning of last month:
    • Site-wide: 38,648

Mosaic antimicrobial resistance/virulence plasmid in hypervirulent ST2096 Klebsiella pneumoniae in India: The rise of a new superbug?

genomics more details view paper
  • Downloaded 157 times
  • Download rankings, all-time:
    • Site-wide: 117,289
    • In genomics: 6,495
  • Year to date:
    • Site-wide: 42,927
  • Since beginning of last month:
    • Site-wide: 46,913

A Bayesian approach for estimating typhoid fever incidence from large-scale facility-based passive surveillance data

epidemiology more details view paper
  • Downloaded 110 times
  • Download rankings, all-time:
    • Site-wide: 126,574
    • In epidemiology: 5,138
  • Year to date:
    • Site-wide: 76,847
  • Since beginning of last month:
    • Site-wide: 63,072

A novel method for measuring phenotypic colistin resistance in Escherichia coli populations from chicken flocks

microbiology more details view paper
  • Downloaded 60 times
  • Download rankings, all-time:
    • Site-wide: 133,834
    • In microbiology: 10,387
  • Year to date:
    • Site-wide: 129,573
  • Since beginning of last month:
    • Site-wide: 125,867

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