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Author: Sayan Mukherjee

Rankings

  • All-time downloads: 23,010 (rank: 2,175 out of 380,464)
  • Categories:
    • bioinformatics: 9,335 (rank: 623 out of 32,581)
    • ecology: 927 (rank: 2,960 (tie) out of 16,352)
    • genetics: 1,981 (rank: 7,509 (tie) out of 35,172)
    • genomics: 6,972 (rank: 2,311 out of 40,588)
    • microbiology: 3,013 (rank: 2,360 out of 42,558)
    • neuroscience: 384 (rank: 37,423 (tie) out of 63,835)
    • systems biology: 398 (rank: 7,092 (tie) out of 11,214)

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Preprints

Statistical Considerations in the Design and Analysis of Longitudinal Microbiome Studies

microbiology more details view paper
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    • In microbiology: 147 out of 7,640
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    • Site-wide: 3,032 out of 88,741
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    • Site-wide: 4,685 out of 88,741

Naught all zeros in sequence count data are the same

bioinformatics more details view paper
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    • In bioinformatics: 357 out of 8,390
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    • Site-wide: 2,613 out of 88,741
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    • Site-wide: 5,847 out of 88,741

Fast principal components analysis reveals convergent evolution of ADH1B gene in Europe and East Asia

bioinformatics more details view paper
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    • In bioinformatics: 366 out of 8,390
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    • Site-wide: 16,651 out of 88,741

Detecting Epistasis with the Marginal Epistasis Test in Genetic Mapping Studies of Quantitative Traits

genetics more details view paper
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    • In genetics: 279 out of 4,602
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    • Site-wide: 21,883 out of 88,741
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    • Site-wide: 16,613 out of 88,741

Dynamic linear models guide design and analysis of microbiota studies within artificial human guts

genomics more details view paper
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    • Site-wide: 5,111 out of 88,741
    • In genomics: 848 out of 5,665
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    • Site-wide: 41,137 out of 88,741
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    • Site-wide: 57,112 out of 88,741

HOMINID: A framework for identifying associations between host genetic variation and microbiome composition

genomics more details view paper
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    • Site-wide: 5,973 out of 88,741
    • In genomics: 974 out of 5,665
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    • Site-wide: 51,537 out of 88,741
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    • Site-wide: 34,509 out of 88,741

Differential Expression Analysis for RNAseq using Poisson Mixed Models

genomics more details view paper
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    • In genomics: 1,049 out of 5,665
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    • Site-wide: 37,663 out of 88,741

Measuring and Mitigating PCR Bias in Microbiome Data

genomics more details view paper
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    • Site-wide: 10,875 out of 88,741
    • In genomics: 1,557 out of 5,665
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    • Site-wide: 9,729 out of 88,741
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    • Site-wide: 9,948 out of 88,741

Efficient genome-wide sequencing and low coverage pedigree analysis from non-invasively collected samples

genomics more details view paper
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    • Site-wide: 11,335 out of 88,741
    • In genomics: 1,595 out of 5,665
  • Year to date:
    • Site-wide: 82,425 out of 88,741
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    • Site-wide: 82,678 out of 88,741

A phylogenetic transform enhances analysis of compositional microbiota data

bioinformatics more details view paper
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    • Site-wide: 12,015 out of 88,741
    • In bioinformatics: 1,932 out of 8,390
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    • Site-wide: 56,618 out of 88,741
  • Since beginning of last month:
    • Site-wide: 35,465 out of 88,741

Phylofactorization - a graph partitioning algorithm to identify phylogenetic scales of ecological data

ecology more details view paper
  • Downloaded 927 times
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    • Site-wide: 12,793 out of 88,741
    • In ecology: 304 out of 3,890
  • Year to date:
    • Site-wide: 32,891 out of 88,741
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    • Site-wide: 30,168 out of 88,741

Phylogenetic factorization of compositional data

bioinformatics more details view paper
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    • Site-wide: 16,508 out of 88,741
    • In bioinformatics: 2,521 out of 8,390
  • Year to date:
    • Site-wide: 62,383 out of 88,741
  • Since beginning of last month:
    • Site-wide: 63,459 out of 88,741

A Statistical Pipeline for Identifying Physical Features that Differentiate Classes of 3D Shapes

bioinformatics more details view paper
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    • Site-wide: 18,693 out of 88,741
    • In bioinformatics: 2,767 out of 8,390
  • Year to date:
    • Site-wide: 11,269 out of 88,741
  • Since beginning of last month:
    • Site-wide: 19,944 out of 88,741

Development and assessment of fully automated and globally transitive geometric morphometric methods, with application to a biological comparative dataset with high interspecific variation

bioinformatics more details view paper
  • Downloaded 640 times
  • Download rankings, all-time:
    • Site-wide: 22,437 out of 88,741
    • In bioinformatics: 3,201 out of 8,390
  • Year to date:
    • Site-wide: 70,537 out of 88,741
  • Since beginning of last month:
    • Site-wide: 83,200 out of 88,741

Evolution of DNA methylation in Papio baboons

genomics more details view paper
  • Downloaded 448 times
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    • Site-wide: 35,432 out of 88,741
    • In genomics: 3,414 out of 5,665
  • Year to date:
    • Site-wide: 64,874 out of 88,741
  • Since beginning of last month:
    • Site-wide: 50,070 out of 88,741

Unifying mutualism diversity for interpretation and prediction

systems biology more details view paper
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    • Site-wide: 40,414 out of 88,741
    • In systems biology: 1,181 out of 2,302
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    • Site-wide: 60,746 out of 88,741
  • Since beginning of last month:
    • Site-wide: 67,751 out of 88,741

Combinations of DIPs and Dprs control organization of olfactory receptor neuron terminals in Drosophila

neuroscience more details view paper
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    • Site-wide: 41,961 out of 88,741
    • In neuroscience: 7,292 out of 15,789
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    • Site-wide: 72,096 out of 88,741
  • Since beginning of last month:
    • Site-wide: 74,142 out of 88,741

Label propagation defines signaling networks associated with recurrently mutated cancer genes

bioinformatics more details view paper
  • Downloaded 353 times
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    • Site-wide: 45,534 out of 88,741
    • In bioinformatics: 5,313 out of 8,390
  • Year to date:
    • Site-wide: 55,184 out of 88,741
  • Since beginning of last month:
    • Site-wide: 63,726 out of 88,741

Estimating Rates of Progression and Predicting Future Visual Fields in Glaucoma Using a Deep Variational Autoencoder

bioinformatics more details view paper
  • Downloaded 204 times
  • Download rankings, all-time:
    • Site-wide: 68,155 out of 88,741
    • In bioinformatics: 7,007 out of 8,390
  • Year to date:
    • Site-wide: 77,157 out of 88,741
  • Since beginning of last month:
    • Site-wide: 67,072 out of 88,741

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