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Author: Sayan Mukherjee

Rankings

  • All-time downloads: 24,606 (rank: 2,364 out of 426,771)
  • Categories:
    • bioinformatics: 10,115 (rank: 627 out of 36,221)
    • ecology: 976 (rank: 3,178 (tie) out of 18,685)
    • evolutionary biology: 167 (rank: 19,562 (tie) out of 21,793)
    • genetics: 2,045 (rank: 7,937 (tie) out of 38,051)
    • genomics: 7,247 (rank: 2,456 out of 44,673)
    • microbiology: 3,235 (rank: 3,080 (tie) out of 50,831)
    • neuroscience: 408 (rank: 41,310 (tie) out of 72,417)
    • systems biology: 413 (rank: 7,934 (tie) out of 12,484)

Downloads per author, site-wide

Preprints

Naught all zeros in sequence count data are the same

bioinformatics more details view paper
  • Downloaded 3,243 times
  • Download rankings, all-time:
    • Site-wide: 1,873 out of 101,039
    • In bioinformatics: 324 out of 9,276
  • Year to date:
    • Site-wide: 2,476 out of 101,039
  • Since beginning of last month:
    • Site-wide: 3,591 out of 101,039

Statistical Considerations in the Design and Analysis of Longitudinal Microbiome Studies

microbiology more details view paper
  • Downloaded 3,235 times
  • Download rankings, all-time:
    • Site-wide: 1,882 out of 101,039
    • In microbiology: 177 out of 8,968
  • Year to date:
    • Site-wide: 3,608 out of 101,039
  • Since beginning of last month:
    • Site-wide: 6,502 out of 101,039

Fast principal components analysis reveals convergent evolution of ADH1B gene in Europe and East Asia

bioinformatics more details view paper
  • Downloaded 2,876 times
  • Download rankings, all-time:
    • Site-wide: 2,316 out of 101,039
    • In bioinformatics: 400 out of 9,276
  • Year to date:
    • Site-wide: 30,855 out of 101,039
  • Since beginning of last month:
    • Site-wide: 38,886 out of 101,039

Detecting Epistasis with the Marginal Epistasis Test in Genetic Mapping Studies of Quantitative Traits

genetics more details view paper
  • Downloaded 2,045 times
  • Download rankings, all-time:
    • Site-wide: 4,043 out of 101,039
    • In genetics: 294 out of 5,026
  • Year to date:
    • Site-wide: 25,793 out of 101,039
  • Since beginning of last month:
    • Site-wide: 32,039 out of 101,039

Dynamic linear models guide design and analysis of microbiota studies within artificial human guts

genomics more details view paper
  • Downloaded 1,663 times
  • Download rankings, all-time:
    • Site-wide: 5,714 out of 101,039
    • In genomics: 909 out of 6,265
  • Year to date:
    • Site-wide: 48,033 out of 101,039
  • Since beginning of last month:
    • Site-wide: 47,091 out of 101,039

HOMINID: A framework for identifying associations between host genetic variation and microbiome composition

genomics more details view paper
  • Downloaded 1,506 times
  • Download rankings, all-time:
    • Site-wide: 6,816 out of 101,039
    • In genomics: 1,050 out of 6,265
  • Year to date:
    • Site-wide: 61,635 out of 101,039
  • Since beginning of last month:
    • Site-wide: 75,855 out of 101,039

Differential Expression Analysis for RNAseq using Poisson Mixed Models

genomics more details view paper
  • Downloaded 1,430 times
  • Download rankings, all-time:
    • Site-wide: 7,414 out of 101,039
    • In genomics: 1,133 out of 6,265
  • Year to date:
    • Site-wide: 43,119 out of 101,039
  • Since beginning of last month:
    • Site-wide: 39,897 out of 101,039

Measuring and Mitigating PCR Bias in Microbiome Data

genomics more details view paper
  • Downloaded 1,162 times
  • Download rankings, all-time:
    • Site-wide: 10,545 out of 101,039
    • In genomics: 1,479 out of 6,265
  • Year to date:
    • Site-wide: 10,480 out of 101,039
  • Since beginning of last month:
    • Site-wide: 12,176 out of 101,039

Efficient genome-wide sequencing and low coverage pedigree analysis from non-invasively collected samples

genomics more details view paper
  • Downloaded 1,019 times
  • Download rankings, all-time:
    • Site-wide: 13,013 out of 101,039
    • In genomics: 1,745 out of 6,265
  • Year to date:
    • Site-wide: 94,815 out of 101,039
  • Since beginning of last month:
    • Site-wide: 87,136 out of 101,039

A phylogenetic transform enhances analysis of compositional microbiota data

bioinformatics more details view paper
  • Downloaded 1,004 times
  • Download rankings, all-time:
    • Site-wide: 13,318 out of 101,039
    • In bioinformatics: 2,069 out of 9,276
  • Year to date:
    • Site-wide: 60,739 out of 101,039
  • Since beginning of last month:
    • Site-wide: 67,917 out of 101,039

Phylofactorization - a graph partitioning algorithm to identify phylogenetic scales of ecological data

ecology more details view paper
  • Downloaded 976 times
  • Download rankings, all-time:
    • Site-wide: 13,952 out of 101,039
    • In ecology: 317 out of 4,420
  • Year to date:
    • Site-wide: 38,177 out of 101,039
  • Since beginning of last month:
    • Site-wide: 48,114 out of 101,039

A Statistical Pipeline for Identifying Physical Features that Differentiate Classes of 3D Shapes

bioinformatics more details view paper
  • Downloaded 903 times
  • Download rankings, all-time:
    • Site-wide: 15,830 out of 101,039
    • In bioinformatics: 2,401 out of 9,276
  • Year to date:
    • Site-wide: 9,749 out of 101,039
  • Since beginning of last month:
    • Site-wide: 7,596 out of 101,039

Phylogenetic factorization of compositional data

bioinformatics more details view paper
  • Downloaded 824 times
  • Download rankings, all-time:
    • Site-wide: 18,211 out of 101,039
    • In bioinformatics: 2,705 out of 9,276
  • Year to date:
    • Site-wide: 65,300 out of 101,039
  • Since beginning of last month:
    • Site-wide: 61,296 out of 101,039

Development and assessment of fully automated and globally transitive geometric morphometric methods, with application to a biological comparative dataset with high interspecific variation

bioinformatics more details view paper
  • Downloaded 660 times
  • Download rankings, all-time:
    • Site-wide: 25,351 out of 101,039
    • In bioinformatics: 3,479 out of 9,276
  • Year to date:
    • Site-wide: 82,486 out of 101,039
  • Since beginning of last month:
    • Site-wide: 97,353 out of 101,039

Evolution of DNA methylation in Papio baboons

genomics more details view paper
  • Downloaded 467 times
  • Download rankings, all-time:
    • Site-wide: 39,708 out of 101,039
    • In genomics: 3,710 out of 6,265
  • Year to date:
    • Site-wide: 78,754 out of 101,039
  • Since beginning of last month:
    • Site-wide: 63,687 out of 101,039

Unifying mutualism diversity for interpretation and prediction

systems biology more details view paper
  • Downloaded 413 times
  • Download rankings, all-time:
    • Site-wide: 45,545 out of 101,039
    • In systems biology: 1,304 out of 2,566
  • Year to date:
    • Site-wide: 78,596 out of 101,039
  • Since beginning of last month:
    • Site-wide: 93,174 out of 101,039

Combinations of DIPs and Dprs control organization of olfactory receptor neuron terminals in Drosophila

neuroscience more details view paper
  • Downloaded 408 times
  • Download rankings, all-time:
    • Site-wide: 46,092 out of 101,039
    • In neuroscience: 8,013 out of 18,002
  • Year to date:
    • Site-wide: 80,769 out of 101,039
  • Since beginning of last month:
    • Site-wide: 69,659 out of 101,039

Label propagation defines signaling networks associated with recurrently mutated cancer genes

bioinformatics more details view paper
  • Downloaded 377 times
  • Download rankings, all-time:
    • Site-wide: 49,961 out of 101,039
    • In bioinformatics: 5,754 out of 9,276
  • Year to date:
    • Site-wide: 67,687 out of 101,039
  • Since beginning of last month:
    • Site-wide: 64,593 out of 101,039

Estimating Rates of Progression and Predicting Future Visual Fields in Glaucoma Using a Deep Variational Autoencoder

bioinformatics more details view paper
  • Downloaded 228 times
  • Download rankings, all-time:
    • Site-wide: 73,694 out of 101,039
    • In bioinformatics: 7,486 out of 9,276
  • Year to date:
    • Site-wide: 84,530 out of 101,039
  • Since beginning of last month:
    • Site-wide: 77,809 out of 101,039

Morphological and genomic shifts in mole-rat 'queens' increase fecundity but reduce skeletal integrity

evolutionary biology more details view paper
  • Downloaded 167 times
  • Download rankings, all-time:
    • Site-wide: 84,458 out of 101,039
    • In evolutionary biology: 5,245 out of 6,029
  • Year to date:
    • Site-wide: 36,951 out of 101,039
  • Since beginning of last month:
    • Site-wide: 21,581 out of 101,039

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