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Author: Tulio de Oliveira

Rankings

  • All-time downloads: 83,980 (rank: 1,840 )
  • Categories:
    • bioinformatics: 2,347 (rank: 6,785 (tie) )
    • epidemiology: 33,766 (rank: 509 (tie) )
    • evolutionary biology: 423 (rank: 16,436 (tie) )
    • genetic and genomic medicine: 2,033 (rank: 1,688 (tie) )
    • genomics: 4,203 (rank: 6,226 )
    • hiv aids: 1,755 (rank: 24 )
    • immunology: 6,112 (rank: 1,523 )
    • infectious diseases: 26,166 (rank: 2,192 )
    • microbiology: 3,905 (rank: 4,034 )
    • public and global health: 3,270 (rank: 1,535 (tie) )

Downloads per author, site-wide

Preprints

Emergence and rapid spread of a new severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) lineage with multiple spike mutations in South Africa

epidemiology more details view paper
  • Downloaded 33,379 times
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    • Site-wide: 219
    • In epidemiology: 45
  • Year to date:
    • Site-wide: 50
  • Since beginning of last month:
    • Site-wide: 1,759

SARS-CoV-2 501Y.V2 (B.1.351) elicits cross-reactive neutralizing antibodies

immunology more details view paper
  • Downloaded 5,539 times
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    • Site-wide: 2,051
    • In immunology: 67
  • Year to date:
    • Site-wide: 363
  • Since beginning of last month:
    • Site-wide: 23,563

Escape of SARS-CoV-2 501Y.V2 variants from neutralization by convalescent plasma

infectious diseases more details view paper
  • Downloaded 5,362 times
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    • Site-wide: 2,139
    • In infectious diseases: 527
  • Year to date:
    • Site-wide: 377
  • Since beginning of last month:
    • Site-wide: 20,854

Preliminary Efficacy of the NVX-CoV2373 Covid-19 Vaccine Against the B.1.351 Variant

infectious diseases more details view paper
  • Downloaded 4,011 times
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    • Site-wide: 3,228
    • In infectious diseases: 683
  • Year to date:
    • Site-wide: 523
  • Since beginning of last month:
    • Site-wide: 17,443

The continuous evolution of SARS-CoV-2 in South Africa: a new lineage with rapid accumulation of mutations of concern and global detection

infectious diseases more details view paper
  • Downloaded 3,867 times
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    • Site-wide: 3,393
    • In infectious diseases: 703
  • Year to date:
    • Site-wide: 538
  • Since beginning of last month:
    • Site-wide: 9

The emergence and ongoing convergent evolution of the N501Y lineages coincides with a major global shift in the SARS-CoV-2 selective landscape

infectious diseases more details view paper
  • Downloaded 3,136 times
  • Download rankings, all-time:
    • Site-wide: 4,555
    • In infectious diseases: 853
  • Year to date:
    • Site-wide: 686
  • Since beginning of last month:
    • Site-wide: 1,957

PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern

infectious diseases more details view paper
  • Downloaded 2,929 times
  • Download rankings, all-time:
    • Site-wide: 4,990
    • In infectious diseases: 904
  • Year to date:
    • Site-wide: 747
  • Since beginning of last month:
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SARS-CoV-2 cell-to-cell spread occurs rapidly and is insensitive to antibody neutralization

microbiology more details view paper
  • Downloaded 2,535 times
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    • Site-wide: 6,178
    • In microbiology: 382
  • Year to date:
    • Site-wide: 900
  • Since beginning of last month:
    • Site-wide: 30,316

Microbial Genome-Wide Association Studies: Lessons from Human GWAS

genomics more details view paper
  • Downloaded 2,495 times
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    • Site-wide: 6,332
    • In genomics: 675
  • Year to date:
    • Site-wide: 33,273
  • Since beginning of last month:
    • Site-wide: 39,084

A novel variant of interest of SARS-CoV-2 with multiple spike mutations is identified from travel surveillance in Africa

infectious diseases more details view paper
  • Downloaded 2,454 times
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    • Site-wide: 6,492
    • In infectious diseases: 1,050
  • Year to date:
    • Site-wide: 942
  • Since beginning of last month:
    • Site-wide: 7,699

Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes

bioinformatics more details view paper
  • Downloaded 2,347 times
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    • Site-wide: 6,931
    • In bioinformatics: 763
  • Year to date:
    • Site-wide: 24,257
  • Since beginning of last month:
    • Site-wide: 69,337

A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa

genetic and genomic medicine more details view paper
  • Downloaded 1,697 times
  • Download rankings, all-time:
    • Site-wide: 11,151
    • In genetic and genomic medicine: 46
  • Year to date:
    • Site-wide: 1,519
  • Since beginning of last month:
    • Site-wide: 3,144

HIV status alters disease severity and immune cell responses in beta variant SARS-CoV-2 infection wave

hiv aids more details view paper
  • Downloaded 1,629 times
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    • Site-wide: 11,859
    • In hiv aids: 5
  • Year to date:
    • Site-wide: 2,221
  • Since beginning of last month:
    • Site-wide: None

Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report

public and global health more details view paper
  • Downloaded 1,567 times
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    • Site-wide: 12,498
    • In public and global health: 286
  • Year to date:
    • Site-wide: 13,698
  • Since beginning of last month:
    • Site-wide: 42,710

Persistent SARS-CoV-2 infection and intra-host evolution in association with advanced HIV infection

infectious diseases more details view paper
  • Downloaded 1,556 times
  • Download rankings, all-time:
    • Site-wide: 12,620
    • In infectious diseases: 1,525
  • Year to date:
    • Site-wide: 1,700
  • Since beginning of last month:
    • Site-wide: 4,620

Major new lineages of SARS-CoV-2 emerge and spread in South Africa during lockdown.

infectious diseases more details view paper
  • Downloaded 1,186 times
  • Download rankings, all-time:
    • Site-wide: 18,987
    • In infectious diseases: 1,849
  • Year to date:
    • Site-wide: 6,138
  • Since beginning of last month:
    • Site-wide: 58,761

The ongoing COVID-19 epidemic in Minas Gerais, Brazil: insights from epidemiological data and SARS-CoV-2 whole genome sequencing.

public and global health more details view paper
  • Downloaded 1,026 times
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    • Site-wide: 23,519
    • In public and global health: 436
  • Year to date:
    • Site-wide: 48,507
  • Since beginning of last month:
    • Site-wide: 104,953

Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation During a Pandemic

genomics more details view paper
  • Downloaded 709 times
  • Download rankings, all-time:
    • Site-wide: 39,637
    • In genomics: 3,245
  • Year to date:
    • Site-wide: 34,720
  • Since beginning of last month:
    • Site-wide: 54,545

A Novel and Expanding SARS-CoV-2 Variant, B.1.1.318, dominates infections in Mauritius

public and global health more details view paper
  • Downloaded 677 times
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    • Site-wide: 42,104
    • In public and global health: 669
  • Year to date:
    • Site-wide: 5,488
  • Since beginning of last month:
    • Site-wide: 16,848

Naturally-acquired immunity in Syrian Golden Hamsters provides protection from re-exposure to emerging heterosubtypic SARS-CoV-2 variants B.1.1.7 and B.1.351

microbiology more details view paper
  • Downloaded 675 times
  • Download rankings, all-time:
    • Site-wide: 42,230
    • In microbiology: 2,582
  • Year to date:
    • Site-wide: 5,515
  • Since beginning of last month:
    • Site-wide: 109,977

Loss of recognition of SARS-CoV-2 B.1.351 variant spike epitopes but overall preservation of T cell immunity

infectious diseases more details view paper
  • Downloaded 618 times
  • Download rankings, all-time:
    • Site-wide: 47,283
    • In infectious diseases: 2,933
  • Year to date:
    • Site-wide: 6,218
  • Since beginning of last month:
    • Site-wide: 21,417

Reduced antibody cross-reactivity following infection with B.1.1.7 than with parental SARS-CoV-2 strains

immunology more details view paper
  • Downloaded 573 times
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    • Site-wide: 52,052
    • In immunology: 1,556
  • Year to date:
    • Site-wide: 7,007
  • Since beginning of last month:
    • Site-wide: 58,973

SARS-CoV-2 shifting transmission dynamics and hidden reservoirs limited the efficacy of public health interventions in Italy

infectious diseases more details view paper
  • Downloaded 529 times
  • Download rankings, all-time:
    • Site-wide: 57,246
    • In infectious diseases: 3,226
  • Year to date:
    • Site-wide: 31,290
  • Since beginning of last month:
    • Site-wide: 44,203

High Resolution analysis of Transmission Dynamics of Sars-Cov-2 in Two Major Hospital Outbreaks in South Africa Leveraging Intrahost Diversity

infectious diseases more details view paper
  • Downloaded 518 times
  • Download rankings, all-time:
    • Site-wide: 58,798
    • In infectious diseases: 3,273
  • Year to date:
    • Site-wide: 17,730
  • Since beginning of last month:
    • Site-wide: None

A genome-wide polygenic approach to HIV uncovers link to inflammatory bowel disease and identifies potential novel genetic variants

genomics more details view paper
  • Downloaded 454 times
  • Download rankings, all-time:
    • Site-wide: 67,899
    • In genomics: 4,779
  • Year to date:
    • Site-wide: 138,676
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    • Site-wide: None

External introductions helped drive and sustain the high incidence of HIV-1 in rural KwaZulu-Natal, South Africa

epidemiology more details view paper
  • Downloaded 387 times
  • Download rankings, all-time:
    • Site-wide: 79,425
    • In epidemiology: 3,371
  • Year to date:
    • Site-wide: 120,642
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    • Site-wide: None

Genome-wide association study of HIV whole genome sequences validated using drug resistance

genomics more details view paper
  • Downloaded 378 times
  • Download rankings, all-time:
    • Site-wide: 81,126
    • In genomics: 5,325
  • Year to date:
    • Site-wide: 138,594
  • Since beginning of last month:
    • Site-wide: 39,039

Yellow fever virus spread in Rio de Janeiro and Espírito Santo, 2016-2019: Phylodynamic assessment to improve intervention strategies

microbiology more details view paper
  • Downloaded 366 times
  • Download rankings, all-time:
    • Site-wide: 83,535
    • In microbiology: 5,795
  • Year to date:
    • Site-wide: 85,751
  • Since beginning of last month:
    • Site-wide: 27,495

Portable sequencing in the field and the classroom: a retrospective examination of the circulation of DENV1 and DENV2 in Brazil

genetic and genomic medicine more details view paper
  • Downloaded 336 times
  • Download rankings, all-time:
    • Site-wide: 89,687
    • In genetic and genomic medicine: 387
  • Year to date:
    • Site-wide: 74,213
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    • Site-wide: None

The CNS in the face of ART contains T cell origin HIV which can lead to drug resistance

microbiology more details view paper
  • Downloaded 329 times
  • Download rankings, all-time:
    • Site-wide: 91,124
    • In microbiology: 6,447
  • Year to date:
    • Site-wide: 123,399
  • Since beginning of last month:
    • Site-wide: 96,548

HIV cell-to-cell spread slows evolution of drug resistance

evolutionary biology more details view paper
  • Downloaded 287 times
  • Download rankings, all-time:
    • Site-wide: 100,747
    • In evolutionary biology: 5,150
  • Year to date:
    • Site-wide: 51,512
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    • Site-wide: 112,087

Chikungunya virus ECSA lineage reintroduction in the northeasternmost region of Brazil

genomics more details view paper
  • Downloaded 167 times
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    • Site-wide: 129,917
    • In genomics: 6,977
  • Year to date:
    • Site-wide: 37,463
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    • Site-wide: 105,811

Complementation can maintain a quasispecies of drug sensitive and resistant HIV

evolutionary biology more details view paper
  • Downloaded 136 times
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    • Site-wide: 136,703
    • In evolutionary biology: 6,718
  • Year to date:
    • Site-wide: 124,092
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    • Site-wide: None

HIV-1 evolutionary dynamics under non-suppressive antiretroviral therapy

hiv aids more details view paper
  • Downloaded 126 times
  • Download rankings, all-time:
    • Site-wide: 138,822
    • In hiv aids: 124
  • Year to date:
    • Site-wide: 51,082
  • Since beginning of last month:
    • Site-wide: 29,585

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