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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 70,616 bioRxiv papers from 308,268 authors.

Author: Luca Pinello

Rankings

  • All-time downloads: 38,879 (rank: 427 out of 308,268)
  • Categories:
    • bioinformatics: 16,229 (rank: 143 out of 26,828)
    • cell biology: 1,894 (rank: 1,304 (tie) out of 21,314)
    • genetics: 2,346 (rank: 5,648 (tie) out of 30,536)
    • genomics: 4,038 (rank: 3,792 out of 34,853)
    • molecular biology: 14,372 (rank: 27 out of 15,050)

Downloads per author, site-wide

Preprints

In vivo CRISPR-Cas gene editing with no detectable genome-wide off-target mutations

molecular biology more details view paper
  • Downloaded 5,231 times
  • Download rankings, all-time:
    • Site-wide: 420 out of 70,616
    • In molecular biology: 9 out of 2,266
  • Year to date:
    • Site-wide: 54,363 out of 70,616
  • Since beginning of last month:
    • Site-wide: 18,301 out of 70,616

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 4,712 times
  • Download rankings, all-time:
    • Site-wide: 518 out of 70,616
    • In bioinformatics: 105 out of 6,912
  • Year to date:
    • Site-wide: 5,944 out of 70,616
  • Since beginning of last month:
    • Site-wide: 7,369 out of 70,616

Assessment of computational methods for the analysis of single-cell ATAC-seq data

bioinformatics more details view paper
  • Downloaded 4,070 times
  • Download rankings, all-time:
    • Site-wide: 700 out of 70,616
    • In bioinformatics: 137 out of 6,912
  • Year to date:
    • Site-wide: 1,361 out of 70,616
  • Since beginning of last month:
    • Site-wide: 1,716 out of 70,616

“Unexpected mutations after CRISPR-Cas9 editing in vivo” are most likely pre-existing sequence variants and not nuclease-induced mutations

molecular biology more details view paper
  • Downloaded 3,836 times
  • Download rankings, all-time:
    • Site-wide: 785 out of 70,616
    • In molecular biology: 20 out of 2,266
  • Year to date:
    • Site-wide: 24,471 out of 70,616
  • Since beginning of last month:
    • Site-wide: 13,581 out of 70,616

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data

genomics more details view paper
  • Downloaded 3,494 times
  • Download rankings, all-time:
    • Site-wide: 944 out of 70,616
    • In genomics: 238 out of 4,714
  • Year to date:
    • Site-wide: 9,737 out of 70,616
  • Since beginning of last month:
    • Site-wide: 20,381 out of 70,616

High-precision CRISPR-Cas9 base editors with minimized bystander and off-target mutations

molecular biology more details view paper
  • Downloaded 2,900 times
  • Download rankings, all-time:
    • Site-wide: 1,337 out of 70,616
    • In molecular biology: 33 out of 2,266
  • Year to date:
    • Site-wide: 14,850 out of 70,616
  • Since beginning of last month:
    • Site-wide: 19,939 out of 70,616

Integrated design, execution, and analysis of arrayed and pooled CRISPR genome editing experiments

molecular biology more details view paper
  • Downloaded 2,405 times
  • Download rankings, all-time:
    • Site-wide: 1,864 out of 70,616
    • In molecular biology: 49 out of 2,266
  • Year to date:
    • Site-wide: 11,262 out of 70,616
  • Since beginning of last month:
    • Site-wide: 20,102 out of 70,616

CRISPResso: sequencing analysis toolbox for CRISPR genome editing

bioinformatics more details view paper
  • Downloaded 2,390 times
  • Download rankings, all-time:
    • Site-wide: 1,882 out of 70,616
    • In bioinformatics: 380 out of 6,912
  • Year to date:
    • Site-wide: 14,480 out of 70,616
  • Since beginning of last month:
    • Site-wide: 13,929 out of 70,616

Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk

genetics more details view paper
  • Downloaded 2,346 times
  • Download rankings, all-time:
    • Site-wide: 1,959 out of 70,616
    • In genetics: 179 out of 3,913
  • Year to date:
    • Site-wide: 52,710 out of 70,616
  • Since beginning of last month:
    • Site-wide: 24,516 out of 70,616

AmpUMI: Design and analysis of unique molecular identifiers for deep amplicon sequencing

bioinformatics more details view paper
  • Downloaded 1,588 times
  • Download rankings, all-time:
    • Site-wide: 3,806 out of 70,616
    • In bioinformatics: 758 out of 6,912
  • Year to date:
    • Site-wide: 64,313 out of 70,616
  • Since beginning of last month:
    • Site-wide: 34,055 out of 70,616

Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper
  • Downloaded 1,302 times
  • Download rankings, all-time:
    • Site-wide: 5,331 out of 70,616
    • In cell biology: 153 out of 3,458
  • Year to date:
    • Site-wide: 1,143 out of 70,616
  • Since beginning of last month:
    • Site-wide: 5,842 out of 70,616

CRISPR-SURF: Discovering regulatory elements by deconvolution of CRISPR tiling screen data

bioinformatics more details view paper
  • Downloaded 1,190 times
  • Download rankings, all-time:
    • Site-wide: 6,209 out of 70,616
    • In bioinformatics: 1,163 out of 6,912
  • Year to date:
    • Site-wide: 20,721 out of 70,616
  • Since beginning of last month:
    • Site-wide: 19,930 out of 70,616

Analysis and comparison of genome editing using CRISPResso2

bioinformatics more details view paper
  • Downloaded 1,075 times
  • Download rankings, all-time:
    • Site-wide: 7,352 out of 70,616
    • In bioinformatics: 1,312 out of 6,912
  • Year to date:
    • Site-wide: 41,903 out of 70,616
  • Since beginning of last month:
    • Site-wide: 22,361 out of 70,616

CRISPRO Identifies Functional Protein Coding Sequences Based on Genome Editing Dense Mutagenesis

bioinformatics more details view paper
  • Downloaded 763 times
  • Download rankings, all-time:
    • Site-wide: 12,608 out of 70,616
    • In bioinformatics: 2,060 out of 6,912
  • Year to date:
    • Site-wide: 27,506 out of 70,616
  • Since beginning of last month:
    • Site-wide: 9,912 out of 70,616

The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during trophectoderm and inner cell mass specification

cell biology more details view paper
  • Downloaded 592 times
  • Download rankings, all-time:
    • Site-wide: 18,174 out of 70,616
    • In cell biology: 769 out of 3,458
  • Year to date:
    • Site-wide: 29,255 out of 70,616
  • Since beginning of last month:
    • Site-wide: 41,155 out of 70,616

Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements

bioinformatics more details view paper
  • Downloaded 441 times
  • Download rankings, all-time:
    • Site-wide: 26,374 out of 70,616
    • In bioinformatics: 3,580 out of 6,912
  • Year to date:
    • Site-wide: 15,947 out of 70,616
  • Since beginning of last month:
    • Site-wide: 59,305 out of 70,616

Forward genetic screen of human transposase genomic rearrangements

genomics more details view paper
  • Downloaded 290 times
  • Download rankings, all-time:
    • Site-wide: 39,976 out of 70,616
    • In genomics: 3,559 out of 4,714
  • Year to date:
    • Site-wide: 67,125 out of 70,616
  • Since beginning of last month:
    • Site-wide: 68,537 out of 70,616

A saturating mutagenesis CRISPR-Cas9 mediated functional genomic screen identifies cis- and trans-regulatory elements of Oct4 in embryonic stem cells

genomics more details view paper
  • Downloaded 254 times
  • Download rankings, all-time:
    • Site-wide: 44,384 out of 70,616
    • In genomics: 3,796 out of 4,714
  • Year to date:
    • Site-wide: 15,571 out of 70,616
  • Since beginning of last month:
    • Site-wide: 5,097 out of 70,616

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