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Author: Luca Pinello

Rankings

  • All-time downloads: 43,716 (rank: 889 out of 394,435)
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    • bioinformatics: 19,127 (rank: 136 out of 33,518)
    • cell biology: 2,455 (rank: 1,365 out of 29,506)
    • genetics: 2,436 (rank: 6,585 (tie) out of 36,146)
    • genomics: 4,448 (rank: 4,309 out of 41,938)
    • molecular biology: 15,250 (rank: 46 out of 20,722)

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Preprints

singlecellVR: interactive visualization of single-cell data in virtual reality

genomics more details view paper

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DNA methylation is a key mechanism for maintaining monoallelic expression on autosomes

genomics more details view paper

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In vivo CRISPR-Cas gene editing with no detectable genome-wide off-target mutations

molecular biology more details view paper
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Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
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Assessment of computational methods for the analysis of single-cell ATAC-seq data

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“Unexpected mutations after CRISPR-Cas9 editing in vivo” are most likely pre-existing sequence variants and not nuclease-induced mutations

molecular biology more details view paper
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STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data

genomics more details view paper
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High-precision CRISPR-Cas9 base editors with minimized bystander and off-target mutations

molecular biology more details view paper
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Integrated design, execution, and analysis of arrayed and pooled CRISPR genome editing experiments

molecular biology more details view paper
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CRISPResso: sequencing analysis toolbox for CRISPR genome editing

bioinformatics more details view paper
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Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk

genetics more details view paper
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Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper
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    • In cell biology: 136 out of 4,753
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AmpUMI: Design and analysis of unique molecular identifiers for deep amplicon sequencing

bioinformatics more details view paper
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CRISPR-SURF: Discovering regulatory elements by deconvolution of CRISPR tiling screen data

bioinformatics more details view paper
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Analysis and comparison of genome editing using CRISPResso2

bioinformatics more details view paper
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    • Site-wide: 22,585 out of 92,351

PrimeDesign software for rapid and simplified design of prime editing guide RNAs

bioinformatics more details view paper
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    • In bioinformatics: 1,770 out of 8,659
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CRISPRO Identifies Functional Protein Coding Sequences Based on Genome Editing Dense Mutagenesis

bioinformatics more details view paper
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The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during trophectoderm and inner cell mass specification

cell biology more details view paper
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Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements

bioinformatics more details view paper
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A saturating mutagenesis CRISPR-Cas9 mediated functional genomic screen identifies cis- and trans-regulatory elements of Oct4 in embryonic stem cells

genomics more details view paper
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    • Site-wide: 17,823 out of 92,351

Forward genetic screen of human transposase genomic rearrangements

genomics more details view paper
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    • Site-wide: 84,675 out of 92,351

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