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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 59,633 bioRxiv papers from 265,294 authors.

Author: Luca Pinello

Rankings

  • All-time downloads: 34,190 (rank: 455 out of 265,294)
  • Categories:
    • bioinformatics: 13,820 (rank: 143 out of 23,688)
    • cell biology: 546 (rank: 5,394 (tie) out of 17,392)
    • genetics: 2,254 (rank: 5,178 (tie) out of 26,961)
    • genomics: 3,621 (rank: 3,634 (tie) out of 31,037)
    • molecular biology: 13,949 (rank: 27 out of 11,869)

Downloads per author, site-wide

Preprints

In vivo CRISPR-Cas gene editing with no detectable genome-wide off-target mutations

molecular biology more details view paper
  • Downloaded 5,138 times
  • Download rankings, all-time:
    • Site-wide: 368 out of 59,633
    • In molecular biology: 7 out of 1,838
  • Year to date:
    • Site-wide: 2,923 out of 59,633
  • Since beginning of last month:
    • Site-wide: 12,784 out of 59,633

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 4,521 times
  • Download rankings, all-time:
    • Site-wide: 454 out of 59,633
    • In bioinformatics: 91 out of 6,034
  • Year to date:
    • Site-wide: 2,445 out of 59,633
  • Since beginning of last month:
    • Site-wide: 5,046 out of 59,633

“Unexpected mutations after CRISPR-Cas9 editing in vivo” are most likely pre-existing sequence variants and not nuclease-induced mutations

molecular biology more details view paper
  • Downloaded 3,737 times
  • Download rankings, all-time:
    • Site-wide: 686 out of 59,633
    • In molecular biology: 14 out of 1,838
  • Year to date:
    • Site-wide: 27,029 out of 59,633
  • Since beginning of last month:
    • Site-wide: 20,167 out of 59,633

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data

genomics more details view paper
  • Downloaded 3,346 times
  • Download rankings, all-time:
    • Site-wide: 849 out of 59,633
    • In genomics: 222 out of 4,155
  • Year to date:
    • Site-wide: 928 out of 59,633
  • Since beginning of last month:
    • Site-wide: 3,374 out of 59,633

High-precision CRISPR-Cas9 base editors with minimized bystander and off-target mutations

molecular biology more details view paper
  • Downloaded 2,779 times
  • Download rankings, all-time:
    • Site-wide: 1,196 out of 59,633
    • In molecular biology: 26 out of 1,838
  • Year to date:
    • Site-wide: 2,484 out of 59,633
  • Since beginning of last month:
    • Site-wide: 12,172 out of 59,633

Assessment of computational methods for the analysis of single-cell ATAC-seq data

bioinformatics more details view paper
  • Downloaded 2,350 times
  • Download rankings, all-time:
    • Site-wide: 1,602 out of 59,633
    • In bioinformatics: 320 out of 6,034
  • Year to date:
    • Site-wide: 228 out of 59,633
  • Since beginning of last month:
    • Site-wide: 9 out of 59,633

Integrated design, execution, and analysis of arrayed and pooled CRISPR genome editing experiments

molecular biology more details view paper
  • Downloaded 2,295 times
  • Download rankings, all-time:
    • Site-wide: 1,667 out of 59,633
    • In molecular biology: 43 out of 1,838
  • Year to date:
    • Site-wide: 11,095 out of 59,633
  • Since beginning of last month:
    • Site-wide: 18,627 out of 59,633

CRISPResso: sequencing analysis toolbox for CRISPR genome editing

bioinformatics more details view paper
  • Downloaded 2,286 times
  • Download rankings, all-time:
    • Site-wide: 1,682 out of 59,633
    • In bioinformatics: 342 out of 6,034
  • Year to date:
    • Site-wide: 21,225 out of 59,633
  • Since beginning of last month:
    • Site-wide: 19,772 out of 59,633

Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk

genetics more details view paper
  • Downloaded 2,254 times
  • Download rankings, all-time:
    • Site-wide: 1,721 out of 59,633
    • In genetics: 164 out of 3,406
  • Year to date:
    • Site-wide: 16,574 out of 59,633
  • Since beginning of last month:
    • Site-wide: 18,324 out of 59,633

AmpUMI: Design and analysis of unique molecular identifiers for deep amplicon sequencing

bioinformatics more details view paper
  • Downloaded 1,519 times
  • Download rankings, all-time:
    • Site-wide: 3,369 out of 59,633
    • In bioinformatics: 682 out of 6,034
  • Year to date:
    • Site-wide: 2,971 out of 59,633
  • Since beginning of last month:
    • Site-wide: 8,505 out of 59,633

CRISPR-SURF: Discovering regulatory elements by deconvolution of CRISPR tiling screen data

bioinformatics more details view paper
  • Downloaded 1,086 times
  • Download rankings, all-time:
    • Site-wide: 5,891 out of 59,633
    • In bioinformatics: 1,114 out of 6,034
  • Year to date:
    • Site-wide: 9,193 out of 59,633
  • Since beginning of last month:
    • Site-wide: 19,057 out of 59,633

Analysis and comparison of genome editing using CRISPResso2

bioinformatics more details view paper
  • Downloaded 975 times
  • Download rankings, all-time:
    • Site-wide: 7,012 out of 59,633
    • In bioinformatics: 1,280 out of 6,034
  • Year to date:
    • Site-wide: 7,751 out of 59,633
  • Since beginning of last month:
    • Site-wide: 17,323 out of 59,633

CRISPRO Identifies Functional Protein Coding Sequences Based on Genome Editing Dense Mutagenesis

bioinformatics more details view paper
  • Downloaded 688 times
  • Download rankings, all-time:
    • Site-wide: 11,854 out of 59,633
    • In bioinformatics: 1,987 out of 6,034
  • Year to date:
    • Site-wide: 17,994 out of 59,633
  • Since beginning of last month:
    • Site-wide: 11,212 out of 59,633

The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during trophectoderm and inner cell mass specification

cell biology more details view paper
  • Downloaded 546 times
  • Download rankings, all-time:
    • Site-wide: 16,257 out of 59,633
    • In cell biology: 652 out of 2,829
  • Year to date:
    • Site-wide: 38,252 out of 59,633
  • Since beginning of last month:
    • Site-wide: 24,221 out of 59,633

Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements

bioinformatics more details view paper
  • Downloaded 395 times
  • Download rankings, all-time:
    • Site-wide: 23,774 out of 59,633
    • In bioinformatics: 3,345 out of 6,034
  • Year to date:
    • Site-wide: 41,943 out of 59,633
  • Since beginning of last month:
    • Site-wide: 27,300 out of 59,633

Forward genetic screen of human transposase genomic rearrangements

genomics more details view paper
  • Downloaded 275 times
  • Download rankings, all-time:
    • Site-wide: 33,451 out of 59,633
    • In genomics: 3,115 out of 4,155
  • Year to date:
    • Site-wide: 49,928 out of 59,633
  • Since beginning of last month:
    • Site-wide: 31,022 out of 59,633

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