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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 65,415 bioRxiv papers from 289,746 authors.

Author: Luca Pinello

  • ORCiD: http://orcid.org/0000-0003-1109-3823
  • Most recently observed institution: Molecular Pathology Unit & Cancer Center, Massachusetts General Hospital Research Institute and Harvard Medical School, Charlestown, MA; Broad Institute of MIT and Harvard, Cambridge, MA

Rankings

  • All-time downloads: 37,271 (rank: 417 out of 289,803)
  • Categories:
    • bioinformatics: 15,396 (rank: 129 out of 25,231)
    • cell biology: 1,656 (rank: 1,262 (tie) out of 19,410)
    • genetics: 2,312 (rank: 5,363 (tie) out of 28,741)
    • genomics: 3,719 (rank: 3,855 (tie) out of 32,966)
    • molecular biology: 14,188 (rank: 27 out of 13,693)

Downloads per author, site-wide

Preprints

In vivo CRISPR-Cas gene editing with no detectable genome-wide off-target mutations

molecular biology more details view paper
  • Downloaded 5,198 times
  • Download rankings, all-time:
    • Site-wide: 399 out of 65,428
    • In molecular biology: 8 out of 2,075
  • Year to date:
    • Site-wide: 3,543 out of 65,428
  • Since beginning of last month:
    • Site-wide: 13,358 out of 65,428

Bioconda: A sustainable and comprehensive software distribution for the life sciences

bioinformatics more details view paper
  • Downloaded 4,612 times
  • Download rankings, all-time:
    • Site-wide: 495 out of 65,428
    • In bioinformatics: 100 out of 6,484
  • Year to date:
    • Site-wide: 2,784 out of 65,428
  • Since beginning of last month:
    • Site-wide: 7,781 out of 65,428

“Unexpected mutations after CRISPR-Cas9 editing in vivo” are most likely pre-existing sequence variants and not nuclease-induced mutations

molecular biology more details view paper
  • Downloaded 3,785 times
  • Download rankings, all-time:
    • Site-wide: 737 out of 65,428
    • In molecular biology: 18 out of 2,075
  • Year to date:
    • Site-wide: 25,711 out of 65,428
  • Since beginning of last month:
    • Site-wide: 20,162 out of 65,428

Assessment of computational methods for the analysis of single-cell ATAC-seq data

bioinformatics more details view paper
  • Downloaded 3,576 times
  • Download rankings, all-time:
    • Site-wide: 820 out of 65,428
    • In bioinformatics: 165 out of 6,484
  • Year to date:
    • Site-wide: 152 out of 65,428
  • Since beginning of last month:
    • Site-wide: 101 out of 65,428

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data

genomics more details view paper
  • Downloaded 3,435 times
  • Download rankings, all-time:
    • Site-wide: 877 out of 65,428
    • In genomics: 227 out of 4,463
  • Year to date:
    • Site-wide: 1,196 out of 65,428
  • Since beginning of last month:
    • Site-wide: 9,175 out of 65,428

High-precision CRISPR-Cas9 base editors with minimized bystander and off-target mutations

molecular biology more details view paper
  • Downloaded 2,847 times
  • Download rankings, all-time:
    • Site-wide: 1,265 out of 65,428
    • In molecular biology: 31 out of 2,075
  • Year to date:
    • Site-wide: 2,998 out of 65,428
  • Since beginning of last month:
    • Site-wide: 15,087 out of 65,428

Integrated design, execution, and analysis of arrayed and pooled CRISPR genome editing experiments

molecular biology more details view paper
  • Downloaded 2,358 times
  • Download rankings, all-time:
    • Site-wide: 1,757 out of 65,428
    • In molecular biology: 47 out of 2,075
  • Year to date:
    • Site-wide: 11,287 out of 65,428
  • Since beginning of last month:
    • Site-wide: 12,834 out of 65,428

CRISPResso: sequencing analysis toolbox for CRISPR genome editing

bioinformatics more details view paper
  • Downloaded 2,340 times
  • Download rankings, all-time:
    • Site-wide: 1,780 out of 65,428
    • In bioinformatics: 358 out of 6,484
  • Year to date:
    • Site-wide: 20,448 out of 65,428
  • Since beginning of last month:
    • Site-wide: 17,693 out of 65,428

Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk

genetics more details view paper
  • Downloaded 2,312 times
  • Download rankings, all-time:
    • Site-wide: 1,823 out of 65,428
    • In genetics: 171 out of 3,699
  • Year to date:
    • Site-wide: 16,134 out of 65,428
  • Since beginning of last month:
    • Site-wide: 12,944 out of 65,428

AmpUMI: Design and analysis of unique molecular identifiers for deep amplicon sequencing

bioinformatics more details view paper
  • Downloaded 1,569 times
  • Download rankings, all-time:
    • Site-wide: 3,536 out of 65,428
    • In bioinformatics: 711 out of 6,484
  • Year to date:
    • Site-wide: 3,683 out of 65,428
  • Since beginning of last month:
    • Site-wide: 21,326 out of 65,428

CRISPR-SURF: Discovering regulatory elements by deconvolution of CRISPR tiling screen data

bioinformatics more details view paper
  • Downloaded 1,140 times
  • Download rankings, all-time:
    • Site-wide: 6,050 out of 65,428
    • In bioinformatics: 1,141 out of 6,484
  • Year to date:
    • Site-wide: 10,023 out of 65,428
  • Since beginning of last month:
    • Site-wide: 17,898 out of 65,428

Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

cell biology more details view paper
  • Downloaded 1,088 times
  • Download rankings, all-time:
    • Site-wide: 6,545 out of 65,428
    • In cell biology: 208 out of 3,152
  • Year to date:
    • Site-wide: 1,530 out of 65,428
  • Since beginning of last month:
    • Site-wide: 558 out of 65,428

Analysis and comparison of genome editing using CRISPResso2

bioinformatics more details view paper
  • Downloaded 1,024 times
  • Download rankings, all-time:
    • Site-wide: 7,200 out of 65,428
    • In bioinformatics: 1,288 out of 6,484
  • Year to date:
    • Site-wide: 8,840 out of 65,428
  • Since beginning of last month:
    • Site-wide: 18,476 out of 65,428

CRISPRO Identifies Functional Protein Coding Sequences Based on Genome Editing Dense Mutagenesis

bioinformatics more details view paper
  • Downloaded 716 times
  • Download rankings, all-time:
    • Site-wide: 12,505 out of 65,428
    • In bioinformatics: 2,057 out of 6,484
  • Year to date:
    • Site-wide: 20,617 out of 65,428
  • Since beginning of last month:
    • Site-wide: 31,702 out of 65,428

The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during trophectoderm and inner cell mass specification

cell biology more details view paper
  • Downloaded 568 times
  • Download rankings, all-time:
    • Site-wide: 17,273 out of 65,428
    • In cell biology: 717 out of 3,152
  • Year to date:
    • Site-wide: 41,359 out of 65,428
  • Since beginning of last month:
    • Site-wide: 43,908 out of 65,428

Haystack: systematic analysis of the variation of epigenetic states and cell-type specific regulatory elements

bioinformatics more details view paper
  • Downloaded 419 times
  • Download rankings, all-time:
    • Site-wide: 25,015 out of 65,428
    • In bioinformatics: 3,465 out of 6,484
  • Year to date:
    • Site-wide: 44,131 out of 65,428
  • Since beginning of last month:
    • Site-wide: 40,860 out of 65,428

Forward genetic screen of human transposase genomic rearrangements

genomics more details view paper
  • Downloaded 284 times
  • Download rankings, all-time:
    • Site-wide: 36,532 out of 65,428
    • In genomics: 3,339 out of 4,463
  • Year to date:
    • Site-wide: 56,800 out of 65,428
  • Since beginning of last month:
    • Site-wide: 63,565 out of 65,428

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