Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 63,046 bioRxiv papers from 279,617 authors.

Author: Yoav Gilad

Rankings

  • All-time downloads: 33,113 (rank: 504 out of 279,617)
  • Categories:
    • genetics: 1,452 (rank: 7,601 out of 27,857)
    • genomics: 31,661 (rank: 176 out of 32,025)

Downloads per author, site-wide

Preprints

WASP: allele-specific software for robust discovery of molecular quantitative trait loci

genomics more details view paper
  • Downloaded 3,225 times
  • Download rankings, all-time:
    • Site-wide: 942 out of 63,046
    • In genomics: 241 out of 4,328
  • Year to date:
    • Site-wide: 39,548 out of 63,046
  • Since beginning of last month:
    • Site-wide: 30,862 out of 63,046

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

genomics more details view paper
  • Downloaded 2,619 times
  • Download rankings, all-time:
    • Site-wide: 1,376 out of 63,046
    • In genomics: 316 out of 4,328
  • Year to date:
    • Site-wide: 236 out of 63,046
  • Since beginning of last month:
    • Site-wide: 479 out of 63,046

Impact of RNA degradation on measurements of gene expression

genomics more details view paper
  • Downloaded 2,525 times
  • Download rankings, all-time:
    • Site-wide: 1,461 out of 63,046
    • In genomics: 334 out of 4,328
  • Year to date:
    • Site-wide: 44,871 out of 63,046
  • Since beginning of last month:
    • Site-wide: 60,684 out of 63,046

Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling

genomics more details view paper
  • Downloaded 2,446 times
  • Download rankings, all-time:
    • Site-wide: 1,565 out of 63,046
    • In genomics: 352 out of 4,328
  • Year to date:
    • Site-wide: 49,714 out of 63,046
  • Since beginning of last month:
    • Site-wide: 35,118 out of 63,046

Batch effects and the effective design of single-cell gene expression studies

genomics more details view paper
  • Downloaded 2,259 times
  • Download rankings, all-time:
    • Site-wide: 1,790 out of 63,046
    • In genomics: 396 out of 4,328
  • Year to date:
    • Site-wide: 32,139 out of 63,046
  • Since beginning of last month:
    • Site-wide: 32,452 out of 63,046

Impact of regulatory variation across human iPSCs and differentiated cells

genomics more details view paper
  • Downloaded 1,633 times
  • Download rankings, all-time:
    • Site-wide: 3,161 out of 63,046
    • In genomics: 613 out of 4,328
  • Year to date:
    • Site-wide: 33,200 out of 63,046
  • Since beginning of last month:
    • Site-wide: 25,537 out of 63,046

Reducing mitochondrial reads in ATAC-seq using CRISPR/Cas9

genomics more details view paper
  • Downloaded 1,613 times
  • Download rankings, all-time:
    • Site-wide: 3,226 out of 63,046
    • In genomics: 622 out of 4,328
  • Year to date:
    • Site-wide: 40,728 out of 63,046
  • Since beginning of last month:
    • Site-wide: 39,901 out of 63,046

Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells

genomics more details view paper
  • Downloaded 1,428 times
  • Download rankings, all-time:
    • Site-wide: 3,965 out of 63,046
    • In genomics: 734 out of 4,328
  • Year to date:
    • Site-wide: 53,262 out of 63,046
  • Since beginning of last month:
    • Site-wide: 60,999 out of 63,046

Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels.

genomics more details view paper
  • Downloaded 1,209 times
  • Download rankings, all-time:
    • Site-wide: 5,188 out of 63,046
    • In genomics: 888 out of 4,328
  • Year to date:
    • Site-wide: 48,828 out of 63,046
  • Since beginning of last month:
    • Site-wide: 52,318 out of 63,046

msCentipede: Modeling heterogeneity across genomic sites improves accuracy in the inference of transcription factor binding

genomics more details view paper
  • Downloaded 1,083 times
  • Download rankings, all-time:
    • Site-wide: 6,262 out of 63,046
    • In genomics: 1,036 out of 4,328
  • Year to date:
    • Site-wide: 60,939 out of 63,046
  • Since beginning of last month:
    • Site-wide: 60,650 out of 63,046

Genetic Variation, Not Cell Type of Origin, Underlies Regulatory Differences in iPSCs

genetics more details view paper
  • Downloaded 981 times
  • Download rankings, all-time:
    • Site-wide: 7,323 out of 63,046
    • In genetics: 568 out of 3,574
  • Year to date:
    • Site-wide: 55,718 out of 63,046
  • Since beginning of last month:
    • Site-wide: 53,811 out of 63,046

Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation

genomics more details view paper
  • Downloaded 974 times
  • Download rankings, all-time:
    • Site-wide: 7,398 out of 63,046
    • In genomics: 1,184 out of 4,328
  • Year to date:
    • Site-wide: 1,554 out of 63,046
  • Since beginning of last month:
    • Site-wide: 3,496 out of 63,046

Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics

genomics more details view paper
  • Downloaded 913 times
  • Download rankings, all-time:
    • Site-wide: 8,236 out of 63,046
    • In genomics: 1,274 out of 4,328
  • Year to date:
    • Site-wide: 55,395 out of 63,046
  • Since beginning of last month:
    • Site-wide: 59,439 out of 63,046

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes

genomics more details view paper
  • Downloaded 887 times
  • Download rankings, all-time:
    • Site-wide: 8,605 out of 63,046
    • In genomics: 1,316 out of 4,328
  • Year to date:
    • Site-wide: 27,187 out of 63,046
  • Since beginning of last month:
    • Site-wide: 39,805 out of 63,046

Reorganization of 3D Genome Structure May Contribute to Gene Regulatory Evolution in Primates

genomics more details view paper
  • Downloaded 855 times
  • Download rankings, all-time:
    • Site-wide: 9,105 out of 63,046
    • In genomics: 1,384 out of 4,328
  • Year to date:
    • Site-wide: 8,373 out of 63,046
  • Since beginning of last month:
    • Site-wide: 26,069 out of 63,046

Mycobacterial infection induces a specific human innate immune response

genomics more details view paper
  • Downloaded 843 times
  • Download rankings, all-time:
    • Site-wide: 9,310 out of 63,046
    • In genomics: 1,406 out of 4,328
  • Year to date:
    • Site-wide: 55,804 out of 63,046
  • Since beginning of last month:
    • Site-wide: 23,860 out of 63,046

Discovery and characterization of variance QTLs in human induced pluripotent stem cells

genomics more details view paper
  • Downloaded 743 times
  • Download rankings, all-time:
    • Site-wide: 11,214 out of 63,046
    • In genomics: 1,600 out of 4,328
  • Year to date:
    • Site-wide: 11,988 out of 63,046
  • Since beginning of last month:
    • Site-wide: 29,970 out of 63,046

A comparison of gene expression and DNA methylation patterns across tissues and species

genomics more details view paper
  • Downloaded 720 times
  • Download rankings, all-time:
    • Site-wide: 11,731 out of 63,046
    • In genomics: 1,650 out of 4,328
  • Year to date:
    • Site-wide: 9,336 out of 63,046
  • Since beginning of last month:
    • Site-wide: 16,710 out of 63,046

Reprogramming LCLs to iPSCs Results in Recovery of Donor-Specific Gene Expression Signature

genomics more details view paper
  • Downloaded 704 times
  • Download rankings, all-time:
    • Site-wide: 12,116 out of 63,046
    • In genomics: 1,683 out of 4,328
  • Year to date:
    • Site-wide: 54,867 out of 63,046
  • Since beginning of last month:
    • Site-wide: 47,473 out of 63,046

A Comparative Study Of Endoderm Differentiation In Humans And Chimpanzees

genomics more details view paper
  • Downloaded 697 times
  • Download rankings, all-time:
    • Site-wide: 12,309 out of 63,046
    • In genomics: 1,702 out of 4,328
  • Year to date:
    • Site-wide: 46,965 out of 63,046
  • Since beginning of last month:
    • Site-wide: 48,574 out of 63,046

Silencing Of Transposable Elements May Not Be A Major Driver Of Regulatory Evolution In Primate Induced Pluripotent Stem Cells

genomics more details view paper
  • Downloaded 663 times
  • Download rankings, all-time:
    • Site-wide: 13,207 out of 63,046
    • In genomics: 1,785 out of 4,328
  • Year to date:
    • Site-wide: 53,649 out of 63,046
  • Since beginning of last month:
    • Site-wide: 54,516 out of 63,046

Epigenetic Modifications are Associated with Inter-species Gene Expression Variation in Primates

genomics more details view paper
  • Downloaded 631 times
  • Download rankings, all-time:
    • Site-wide: 14,139 out of 63,046
    • In genomics: 1,864 out of 4,328
  • Year to date:
    • Site-wide: 56,986 out of 63,046
  • Since beginning of last month:
    • Site-wide: 60,890 out of 63,046

Widespread conservation of chromatin accessibility patterns and transcription factor binding in human and chimpanzee induced pluripotent stem cells

genomics more details view paper
  • Downloaded 612 times
  • Download rankings, all-time:
    • Site-wide: 14,742 out of 63,046
    • In genomics: 1,917 out of 4,328
  • Year to date:
    • Site-wide: 14,801 out of 63,046
  • Since beginning of last month:
    • Site-wide: 11,734 out of 63,046

A Comparative Assessment of Human and Chimpanzee iPSC-derived Cardiomyocytes with Primary Heart Tissues

genomics more details view paper
  • Downloaded 606 times
  • Download rankings, all-time:
    • Site-wide: 14,975 out of 63,046
    • In genomics: 1,932 out of 4,328
  • Year to date:
    • Site-wide: 21,886 out of 63,046
  • Since beginning of last month:
    • Site-wide: 14,245 out of 63,046

The Genetic Architecture of Gene Expression Levels in Wild Baboons

genomics more details view paper
  • Downloaded 570 times
  • Download rankings, all-time:
    • Site-wide: 16,237 out of 63,046
    • In genomics: 2,040 out of 4,328
  • Year to date:
    • Site-wide: 59,036 out of 63,046
  • Since beginning of last month:
    • Site-wide: 57,796 out of 63,046

Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells

genomics more details view paper
  • Downloaded 555 times
  • Download rankings, all-time:
    • Site-wide: 16,819 out of 63,046
    • In genomics: 2,093 out of 4,328
  • Year to date:
    • Site-wide: 48,821 out of 63,046
  • Since beginning of last month:
    • Site-wide: 35,287 out of 63,046

Host genetic variation in mucosal immunity pathways influences the upper airway microbiome

genetics more details view paper
  • Downloaded 471 times
  • Download rankings, all-time:
    • Site-wide: 20,701 out of 63,046
    • In genetics: 1,392 out of 3,574
  • Year to date:
    • Site-wide: 53,455 out of 63,046
  • Since beginning of last month:
    • Site-wide: 54,687 out of 63,046

A Methodological Assessment and Characterization of Genetically-Driven Variation in Three Human Phosphoproteomes

genomics more details view paper
  • Downloaded 331 times
  • Download rankings, all-time:
    • Site-wide: 30,216 out of 63,046
    • In genomics: 2,978 out of 4,328
  • Year to date:
    • Site-wide: 43,837 out of 63,046
  • Since beginning of last month:
    • Site-wide: 42,327 out of 63,046

Inter-species differences in response to hypoxia in iPSC-derived cardiomyocytes from humans and chimpanzees

genomics more details view paper
  • Downloaded 317 times
  • Download rankings, all-time:
    • Site-wide: 31,402 out of 63,046
    • In genomics: 3,053 out of 4,328
  • Year to date:
    • Site-wide: 27,607 out of 63,046
  • Since beginning of last month:
    • Site-wide: 32,374 out of 63,046

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News