Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,594 bioRxiv papers from 298,341 authors.

Author: Yoav Gilad

Rankings

  • All-time downloads: 34,706 (rank: 507 out of 298,132)
  • Categories:
    • genetics: 1,478 (rank: 8,232 (tie) out of 29,770)
    • genomics: 33,228 (rank: 175 out of 33,991)

Downloads per author, site-wide

Preprints

WASP: allele-specific software for robust discovery of molecular quantitative trait loci

genomics more details view paper
  • Downloaded 3,254 times
  • Download rankings, all-time:
    • Site-wide: 1,014 out of 67,590
    • In genomics: 247 out of 4,581
  • Year to date:
    • Site-wide: 39,956 out of 67,590
  • Since beginning of last month:
    • Site-wide: 30,191 out of 67,590

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

genomics more details view paper
  • Downloaded 3,191 times
  • Download rankings, all-time:
    • Site-wide: 1,060 out of 67,590
    • In genomics: 256 out of 4,581
  • Year to date:
    • Site-wide: 220 out of 67,590
  • Since beginning of last month:
    • Site-wide: 537 out of 67,590

Impact of RNA degradation on measurements of gene expression

genomics more details view paper
  • Downloaded 2,540 times
  • Download rankings, all-time:
    • Site-wide: 1,590 out of 67,590
    • In genomics: 356 out of 4,581
  • Year to date:
    • Site-wide: 48,950 out of 67,590
  • Since beginning of last month:
    • Site-wide: 51,179 out of 67,590

Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling

genomics more details view paper
  • Downloaded 2,479 times
  • Download rankings, all-time:
    • Site-wide: 1,672 out of 67,590
    • In genomics: 367 out of 4,581
  • Year to date:
    • Site-wide: 47,555 out of 67,590
  • Since beginning of last month:
    • Site-wide: 20,012 out of 67,590

Batch effects and the effective design of single-cell gene expression studies

genomics more details view paper
  • Downloaded 2,279 times
  • Download rankings, all-time:
    • Site-wide: 1,956 out of 67,590
    • In genomics: 424 out of 4,581
  • Year to date:
    • Site-wide: 35,187 out of 67,590
  • Since beginning of last month:
    • Site-wide: 37,368 out of 67,590

Impact of regulatory variation across human iPSCs and differentiated cells

genomics more details view paper
  • Downloaded 1,654 times
  • Download rankings, all-time:
    • Site-wide: 3,373 out of 67,590
    • In genomics: 642 out of 4,581
  • Year to date:
    • Site-wide: 35,970 out of 67,590
  • Since beginning of last month:
    • Site-wide: 38,483 out of 67,590

Reducing mitochondrial reads in ATAC-seq using CRISPR/Cas9

genomics more details view paper
  • Downloaded 1,618 times
  • Download rankings, all-time:
    • Site-wide: 3,501 out of 67,590
    • In genomics: 663 out of 4,581
  • Year to date:
    • Site-wide: 48,273 out of 67,590
  • Since beginning of last month:
    • Site-wide: 65,903 out of 67,590

Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells

genomics more details view paper
  • Downloaded 1,437 times
  • Download rankings, all-time:
    • Site-wide: 4,296 out of 67,590
    • In genomics: 779 out of 4,581
  • Year to date:
    • Site-wide: 59,266 out of 67,590
  • Since beginning of last month:
    • Site-wide: 62,642 out of 67,590

Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels.

genomics more details view paper
  • Downloaded 1,218 times
  • Download rankings, all-time:
    • Site-wide: 5,658 out of 67,590
    • In genomics: 961 out of 4,581
  • Year to date:
    • Site-wide: 54,883 out of 67,590
  • Since beginning of last month:
    • Site-wide: 55,025 out of 67,590

Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation

genomics more details view paper
  • Downloaded 1,142 times
  • Download rankings, all-time:
    • Site-wide: 6,283 out of 67,590
    • In genomics: 1,037 out of 4,581
  • Year to date:
    • Site-wide: 1,582 out of 67,590
  • Since beginning of last month:
    • Site-wide: 2,773 out of 67,590

msCentipede: Modeling heterogeneity across genomic sites improves accuracy in the inference of transcription factor binding

genomics more details view paper
  • Downloaded 1,090 times
  • Download rankings, all-time:
    • Site-wide: 6,801 out of 67,590
    • In genomics: 1,104 out of 4,581
  • Year to date:
    • Site-wide: 65,916 out of 67,590
  • Since beginning of last month:
    • Site-wide: 61,505 out of 67,590

Genetic Variation, Not Cell Type of Origin, Underlies Regulatory Differences in iPSCs

genetics more details view paper
  • Downloaded 1,000 times
  • Download rankings, all-time:
    • Site-wide: 7,798 out of 67,590
    • In genetics: 596 out of 3,799
  • Year to date:
    • Site-wide: 57,806 out of 67,590
  • Since beginning of last month:
    • Site-wide: 32,254 out of 67,590

Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics

genomics more details view paper
  • Downloaded 924 times
  • Download rankings, all-time:
    • Site-wide: 8,900 out of 67,590
    • In genomics: 1,358 out of 4,581
  • Year to date:
    • Site-wide: 60,339 out of 67,590
  • Since beginning of last month:
    • Site-wide: 61,890 out of 67,590

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes

genomics more details view paper
  • Downloaded 915 times
  • Download rankings, all-time:
    • Site-wide: 9,036 out of 67,590
    • In genomics: 1,375 out of 4,581
  • Year to date:
    • Site-wide: 28,856 out of 67,590
  • Since beginning of last month:
    • Site-wide: 40,631 out of 67,590

Reorganization of 3D Genome Structure May Contribute to Gene Regulatory Evolution in Primates

genomics more details view paper
  • Downloaded 886 times
  • Download rankings, all-time:
    • Site-wide: 9,456 out of 67,590
    • In genomics: 1,424 out of 4,581
  • Year to date:
    • Site-wide: 9,811 out of 67,590
  • Since beginning of last month:
    • Site-wide: 20,199 out of 67,590

Mycobacterial infection induces a specific human innate immune response

genomics more details view paper
  • Downloaded 856 times
  • Download rankings, all-time:
    • Site-wide: 10,007 out of 67,590
    • In genomics: 1,484 out of 4,581
  • Year to date:
    • Site-wide: 60,305 out of 67,590
  • Since beginning of last month:
    • Site-wide: 44,695 out of 67,590

A comparison of gene expression and DNA methylation patterns across tissues and species

genomics more details view paper
  • Downloaded 761 times
  • Download rankings, all-time:
    • Site-wide: 11,957 out of 67,590
    • In genomics: 1,683 out of 4,581
  • Year to date:
    • Site-wide: 10,325 out of 67,590
  • Since beginning of last month:
    • Site-wide: 15,221 out of 67,590

Discovery and characterization of variance QTLs in human induced pluripotent stem cells

genomics more details view paper
  • Downloaded 751 times
  • Download rankings, all-time:
    • Site-wide: 12,213 out of 67,590
    • In genomics: 1,707 out of 4,581
  • Year to date:
    • Site-wide: 15,095 out of 67,590
  • Since beginning of last month:
    • Site-wide: 61,992 out of 67,590

Reprogramming LCLs to iPSCs Results in Recovery of Donor-Specific Gene Expression Signature

genomics more details view paper
  • Downloaded 712 times
  • Download rankings, all-time:
    • Site-wide: 13,200 out of 67,590
    • In genomics: 1,798 out of 4,581
  • Year to date:
    • Site-wide: 60,990 out of 67,590
  • Since beginning of last month:
    • Site-wide: 59,085 out of 67,590

A Comparative Study Of Endoderm Differentiation In Humans And Chimpanzees

genomics more details view paper
  • Downloaded 705 times
  • Download rankings, all-time:
    • Site-wide: 13,378 out of 67,590
    • In genomics: 1,810 out of 4,581
  • Year to date:
    • Site-wide: 53,649 out of 67,590
  • Since beginning of last month:
    • Site-wide: 66,203 out of 67,590

Silencing Of Transposable Elements May Not Be A Major Driver Of Regulatory Evolution In Primate Induced Pluripotent Stem Cells

genomics more details view paper
  • Downloaded 673 times
  • Download rankings, all-time:
    • Site-wide: 14,270 out of 67,590
    • In genomics: 1,889 out of 4,581
  • Year to date:
    • Site-wide: 58,982 out of 67,590
  • Since beginning of last month:
    • Site-wide: 61,427 out of 67,590

Widespread conservation of chromatin accessibility patterns and transcription factor binding in human and chimpanzee induced pluripotent stem cells

genomics more details view paper
  • Downloaded 658 times
  • Download rankings, all-time:
    • Site-wide: 14,729 out of 67,590
    • In genomics: 1,914 out of 4,581
  • Year to date:
    • Site-wide: 15,212 out of 67,590
  • Since beginning of last month:
    • Site-wide: 16,332 out of 67,590

A Comparative Assessment of Human and Chimpanzee iPSC-derived Cardiomyocytes with Primary Heart Tissues

genomics more details view paper
  • Downloaded 649 times
  • Download rankings, all-time:
    • Site-wide: 15,032 out of 67,590
    • In genomics: 1,943 out of 4,581
  • Year to date:
    • Site-wide: 21,803 out of 67,590
  • Since beginning of last month:
    • Site-wide: 13,646 out of 67,590

Epigenetic Modifications are Associated with Inter-species Gene Expression Variation in Primates

genomics more details view paper
  • Downloaded 640 times
  • Download rankings, all-time:
    • Site-wide: 15,330 out of 67,590
    • In genomics: 1,969 out of 4,581
  • Year to date:
    • Site-wide: 62,332 out of 67,590
  • Since beginning of last month:
    • Site-wide: 61,787 out of 67,590

The Genetic Architecture of Gene Expression Levels in Wild Baboons

genomics more details view paper
  • Downloaded 577 times
  • Download rankings, all-time:
    • Site-wide: 17,720 out of 67,590
    • In genomics: 2,160 out of 4,581
  • Year to date:
    • Site-wide: 64,518 out of 67,590
  • Since beginning of last month:
    • Site-wide: 63,588 out of 67,590

Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells

genomics more details view paper
  • Downloaded 576 times
  • Download rankings, all-time:
    • Site-wide: 17,777 out of 67,590
    • In genomics: 2,162 out of 4,581
  • Year to date:
    • Site-wide: 50,755 out of 67,590
  • Since beginning of last month:
    • Site-wide: 40,644 out of 67,590

Host genetic variation in mucosal immunity pathways influences the upper airway microbiome

genetics more details view paper
  • Downloaded 478 times
  • Download rankings, all-time:
    • Site-wide: 22,517 out of 67,590
    • In genetics: 1,500 out of 3,799
  • Year to date:
    • Site-wide: 59,743 out of 67,590
  • Since beginning of last month:
    • Site-wide: 58,918 out of 67,590

Alternative polyadenylation mediates genetic regulation of gene expression

genomics more details view paper
  • Downloaded 375 times
  • Download rankings, all-time:
    • Site-wide: 29,529 out of 67,590
    • In genomics: 2,972 out of 4,581
  • Year to date:
    • Site-wide: 10,643 out of 67,590
  • Since beginning of last month:
    • Site-wide: 368 out of 67,590

A Methodological Assessment and Characterization of Genetically-Driven Variation in Three Human Phosphoproteomes

genomics more details view paper
  • Downloaded 341 times
  • Download rankings, all-time:
    • Site-wide: 32,560 out of 67,590
    • In genomics: 3,141 out of 4,581
  • Year to date:
    • Site-wide: 49,902 out of 67,590
  • Since beginning of last month:
    • Site-wide: 55,843 out of 67,590

Inter-species differences in response to hypoxia in iPSC-derived cardiomyocytes from humans and chimpanzees

genomics more details view paper
  • Downloaded 327 times
  • Download rankings, all-time:
    • Site-wide: 33,858 out of 67,590
    • In genomics: 3,220 out of 4,581
  • Year to date:
    • Site-wide: 32,651 out of 67,590
  • Since beginning of last month:
    • Site-wide: 57,419 out of 67,590

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News