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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,793 bioRxiv papers from 266,023 authors.

Author: Yoav Gilad

Rankings

  • All-time downloads: 32,086 (rank: 487 out of 266,023)
  • Categories:
    • genetics: 1,436 (rank: 6,411 out of 25,343)
    • genomics: 30,650 (rank: 172 out of 30,373)

Downloads per author, site-wide

Preprints

WASP: allele-specific software for robust discovery of molecular quantitative trait loci

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    • In genomics: 229 out of 4,057
  • Year to date:
    • Site-wide: 37,287 out of 57,793
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    • Site-wide: 50,640 out of 57,793

Impact of RNA degradation on measurements of gene expression

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    • In genomics: 325 out of 4,057
  • Year to date:
    • Site-wide: 39,214 out of 57,793
  • Since beginning of last month:
    • Site-wide: 32,765 out of 57,793

Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling

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    • In genomics: 342 out of 4,057
  • Year to date:
    • Site-wide: 47,848 out of 57,793
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    • Site-wide: 40,003 out of 57,793

Batch effects and the effective design of single-cell gene expression studies

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    • In genomics: 380 out of 4,057
  • Year to date:
    • Site-wide: 29,366 out of 57,793
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    • Site-wide: 18,403 out of 57,793

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

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    • In genomics: 387 out of 4,057
  • Year to date:
    • Site-wide: 231 out of 57,793
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    • Site-wide: 460 out of 57,793

Impact of regulatory variation across human iPSCs and differentiated cells

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  • Downloaded 1,608 times
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    • In genomics: 587 out of 4,057
  • Year to date:
    • Site-wide: 32,188 out of 57,793
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    • Site-wide: 32,669 out of 57,793

Reducing mitochondrial reads in ATAC-seq using CRISPR/Cas9

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    • Site-wide: 3,011 out of 57,793
    • In genomics: 591 out of 4,057
  • Year to date:
    • Site-wide: 36,900 out of 57,793
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    • Site-wide: 34,654 out of 57,793

Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells

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    • In genomics: 684 out of 4,057
  • Year to date:
    • Site-wide: 46,855 out of 57,793
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    • Site-wide: 28,425 out of 57,793

Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels.

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    • Site-wide: 4,819 out of 57,793
    • In genomics: 846 out of 4,057
  • Year to date:
    • Site-wide: 43,621 out of 57,793
  • Since beginning of last month:
    • Site-wide: 45,723 out of 57,793

msCentipede: Modeling heterogeneity across genomic sites improves accuracy in the inference of transcription factor binding

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    • In genomics: 976 out of 4,057
  • Year to date:
    • Site-wide: 56,106 out of 57,793
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    • Site-wide: 52,509 out of 57,793

Genetic Variation, Not Cell Type of Origin, Underlies Regulatory Differences in iPSCs

genetics more details view paper
  • Downloaded 972 times
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    • Site-wide: 6,839 out of 57,793
    • In genetics: 547 out of 3,318
  • Year to date:
    • Site-wide: 50,860 out of 57,793
  • Since beginning of last month:
    • Site-wide: 54,741 out of 57,793

Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics

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    • Site-wide: 7,612 out of 57,793
    • In genomics: 1,197 out of 4,057
  • Year to date:
    • Site-wide: 49,389 out of 57,793
  • Since beginning of last month:
    • Site-wide: 50,908 out of 57,793

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes

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    • In genomics: 1,254 out of 4,057
  • Year to date:
    • Site-wide: 23,655 out of 57,793
  • Since beginning of last month:
    • Site-wide: 20,158 out of 57,793

Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation

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  • Downloaded 822 times
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    • Site-wide: 8,906 out of 57,793
    • In genomics: 1,355 out of 4,057
  • Year to date:
    • Site-wide: 1,535 out of 57,793
  • Since beginning of last month:
    • Site-wide: 3,488 out of 57,793

Mycobacterial infection induces a specific human innate immune response

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    • Site-wide: 8,902 out of 57,793
    • In genomics: 1,354 out of 4,057
  • Year to date:
    • Site-wide: 55,181 out of 57,793
  • Since beginning of last month:
    • Site-wide: 39,071 out of 57,793

Reorganization of 3D Genome Structure May Contribute to Gene Regulatory Evolution in Primates

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    • Site-wide: 8,935 out of 57,793
    • In genomics: 1,360 out of 4,057
  • Year to date:
    • Site-wide: 7,345 out of 57,793
  • Since beginning of last month:
    • Site-wide: 16,825 out of 57,793

Discovery and characterization of variance QTLs in human induced pluripotent stem cells

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  • Downloaded 721 times
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    • Site-wide: 10,768 out of 57,793
    • In genomics: 1,551 out of 4,057
  • Year to date:
    • Site-wide: 10,055 out of 57,793
  • Since beginning of last month:
    • Site-wide: 34,004 out of 57,793

Reprogramming LCLs to iPSCs Results in Recovery of Donor-Specific Gene Expression Signature

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    • Site-wide: 11,347 out of 57,793
    • In genomics: 1,598 out of 4,057
  • Year to date:
    • Site-wide: 50,552 out of 57,793
  • Since beginning of last month:
    • Site-wide: 40,506 out of 57,793

A Comparative Study Of Endoderm Differentiation In Humans And Chimpanzees

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  • Downloaded 687 times
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    • Site-wide: 11,524 out of 57,793
    • In genomics: 1,620 out of 4,057
  • Year to date:
    • Site-wide: 42,018 out of 57,793
  • Since beginning of last month:
    • Site-wide: 33,201 out of 57,793

A comparison of gene expression and DNA methylation patterns across tissues and species

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  • Downloaded 681 times
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    • Site-wide: 11,656 out of 57,793
    • In genomics: 1,638 out of 4,057
  • Year to date:
    • Site-wide: 8,375 out of 57,793
  • Since beginning of last month:
    • Site-wide: 25,037 out of 57,793

Silencing Of Transposable Elements May Not Be A Major Driver Of Regulatory Evolution In Primate Induced Pluripotent Stem Cells

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  • Downloaded 653 times
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    • Site-wide: 12,399 out of 57,793
    • In genomics: 1,714 out of 4,057
  • Year to date:
    • Site-wide: 49,515 out of 57,793
  • Since beginning of last month:
    • Site-wide: 53,358 out of 57,793

Epigenetic Modifications are Associated with Inter-species Gene Expression Variation in Primates

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  • Downloaded 626 times
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    • Site-wide: 13,100 out of 57,793
    • In genomics: 1,772 out of 4,057
  • Year to date:
    • Site-wide: 50,745 out of 57,793
  • Since beginning of last month:
    • Site-wide: 50,076 out of 57,793

A Comparative Assessment of Human and Chimpanzee iPSC-derived Cardiomyocytes with Primary Heart Tissues

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  • Downloaded 568 times
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    • Site-wide: 14,991 out of 57,793
    • In genomics: 1,922 out of 4,057
  • Year to date:
    • Site-wide: 21,915 out of 57,793
  • Since beginning of last month:
    • Site-wide: 21,081 out of 57,793

The Genetic Architecture of Gene Expression Levels in Wild Baboons

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  • Downloaded 564 times
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    • Site-wide: 15,153 out of 57,793
    • In genomics: 1,943 out of 4,057
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    • Site-wide: 53,864 out of 57,793
  • Since beginning of last month:
    • Site-wide: 50,800 out of 57,793

Widespread conservation of chromatin accessibility patterns and transcription factor binding in human and chimpanzee induced pluripotent stem cells

genomics more details view paper
  • Downloaded 554 times
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    • Site-wide: 15,497 out of 57,793
    • In genomics: 1,975 out of 4,057
  • Year to date:
    • Site-wide: 16,112 out of 57,793
  • Since beginning of last month:
    • Site-wide: 22,921 out of 57,793

Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells

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  • Downloaded 541 times
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    • Site-wide: 15,974 out of 57,793
    • In genomics: 2,024 out of 4,057
  • Year to date:
    • Site-wide: 45,522 out of 57,793
  • Since beginning of last month:
    • Site-wide: 52,426 out of 57,793

Host genetic variation in mucosal immunity pathways influences the upper airway microbiome

genetics more details view paper
  • Downloaded 464 times
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    • Site-wide: 19,248 out of 57,793
    • In genetics: 1,322 out of 3,318
  • Year to date:
    • Site-wide: 47,828 out of 57,793
  • Since beginning of last month:
    • Site-wide: 40,642 out of 57,793

A Methodological Assessment and Characterization of Genetically-Driven Variation in Three Human Phosphoproteomes

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  • Downloaded 319 times
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    • Site-wide: 28,446 out of 57,793
    • In genomics: 2,843 out of 4,057
  • Year to date:
    • Site-wide: 39,375 out of 57,793
  • Since beginning of last month:
    • Site-wide: 35,609 out of 57,793

Inter-species differences in response to hypoxia in iPSC-derived cardiomyocytes from humans and chimpanzees

genomics more details view paper
  • Downloaded 294 times
  • Download rankings, all-time:
    • Site-wide: 30,571 out of 57,793
    • In genomics: 2,951 out of 4,057
  • Year to date:
    • Site-wide: 25,441 out of 57,793
  • Since beginning of last month:
    • Site-wide: 40,006 out of 57,793

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