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Author: Kerstin Howe

Rankings

  • All-time downloads: 65,152 (rank: 2,393 )
  • Categories:
    • bioinformatics: 9,624 (rank: 958 (tie) )
    • evolutionary biology: 763 (rank: 9,878 (tie) )
    • genomics: 54,765 (rank: 169 )

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Preprints

A Chromosome-level Genome Assembly of the Reed Warbler (Acrocephalus scirpaceus)

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The complete sequence of a human genome

genomics more details view paper
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    • Site-wide: 223
    • In genomics: 10
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    • Site-wide: 43
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Telomere-to-telomere assembly of a complete human X chromosome

bioinformatics more details view paper
  • Downloaded 6,568 times
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    • Site-wide: 1,591
    • In bioinformatics: 101
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    • Site-wide: 11,661
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Towards complete and error-free genome assemblies of all vertebrate species

genomics more details view paper
  • Downloaded 5,770 times
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    • Site-wide: 1,904
    • In genomics: 164
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    • Site-wide: 1,520
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Identifying and removing haplotypic duplication in primary genome assemblies

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  • Downloaded 2,502 times
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    • Site-wide: 6,224
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An improved pig reference genome sequence to enable pig genetics and genomics research

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  • Downloaded 1,720 times
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    • Site-wide: 10,800
    • In genomics: 1,122
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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,625 times
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    • Site-wide: 11,755
    • In genomics: 1,216
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The pig X and Y chromosomes: structure, sequence and evolution

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  • Downloaded 1,540 times
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    • Site-wide: 12,649
    • In genomics: 1,312
  • Year to date:
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Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
  • Downloaded 1,533 times
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    • In genomics: 1,320
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Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

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  • Downloaded 1,200 times
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    • In genomics: 1,811
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    • Site-wide: 102,356
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Reference genome and demographic history of the most endangered marine mammal, the vaquita

genomics more details view paper
  • Downloaded 1,118 times
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    • Site-wide: 20,501
    • In genomics: 1,975
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    • Site-wide: 46,757
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The genome of C57BL/6J "Eve", the mother of the laboratory mouse genome reference strain

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  • Downloaded 1,042 times
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    • Site-wide: 22,766
    • In genomics: 2,172
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    • Site-wide: 70,531
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CONSTRUCTION OF WHOLE GENOMES FROM SCAFFOLDS USING SINGLE CELL STRAND-SEQ DATA

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  • Downloaded 1,002 times
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    • Site-wide: 24,058
    • In genomics: 2,263
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    • Site-wide: 30,202
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Complete vertebrate mitogenomes reveal widespread gene duplications and repeats

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  • Downloaded 948 times
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    • In genomics: 2,417
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Structure and evolutionary history of a large family of NLR proteins in the zebrafish

evolutionary biology more details view paper
  • Downloaded 763 times
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    • Site-wide: 35,355
    • In evolutionary biology: 1,636
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    • Site-wide: 113,425
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A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia Illucens L.)

genomics more details view paper
  • Downloaded 710 times
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    • Site-wide: 39,089
    • In genomics: 3,226
  • Year to date:
    • Site-wide: 13,348
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    • Site-wide: 31,045

Structure and evolutionary history of a large family of NLR proteins in the zebrafish

genomics more details view paper
  • Downloaded 673 times
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    • Site-wide: 41,939
    • In genomics: 3,400
  • Year to date:
    • Site-wide: 122,270
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    • Site-wide: 97,935

Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies

genomics more details view paper
  • Downloaded 648 times
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    • Site-wide: 44,058
    • In genomics: 3,537
  • Year to date:
    • Site-wide: 5,545
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    • Site-wide: 318

The Gene-Rich Genome of the Scallop Pecten maximus

genomics more details view paper
  • Downloaded 599 times
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    • Site-wide: 48,523
    • In genomics: 3,776
  • Year to date:
    • Site-wide: 92,532
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    • Site-wide: 102,123

Widespread false gene gains caused by duplication errors in genome assemblies

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  • Downloaded 587 times
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    • Site-wide: 49,913
    • In genomics: 3,843
  • Year to date:
    • Site-wide: 6,383
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Significantly improving the quality of genome assemblies through curation

bioinformatics more details view paper
  • Downloaded 554 times
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    • Site-wide: 53,551
    • In bioinformatics: 5,432
  • Year to date:
    • Site-wide: 47,639
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    • Site-wide: 54,225

gEVAL - A web based browser for evaluating genome assemblies

genomics more details view paper
  • Downloaded 440 times
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    • Site-wide: 69,309
    • In genomics: 4,833
  • Year to date:
    • Site-wide: 138,454
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False gene and chromosome losses affected by assembly and sequence errors

genomics more details view paper
  • Downloaded 282 times
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    • Site-wide: 100,745
    • In genomics: 6,078
  • Year to date:
    • Site-wide: 18,281
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    • Site-wide: 31,929

A high-quality Genome and Comparison of Short versus Long Read Transcriptome of the Palaearctic duck Aythya fuligula (Tufted Duck)

genomics more details view paper
  • Downloaded 210 times
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    • Site-wide: 118,298
    • In genomics: 6,647
  • Year to date:
    • Site-wide: 26,986
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    • Site-wide: 55,291

Chromosome-level genome assembly of Acanthopagrus latus using PacBio and Hi-C technologies

genomics more details view paper
  • Downloaded 111 times
  • Download rankings, all-time:
    • Site-wide: 140,499
    • In genomics: 7,294
  • Year to date:
    • Site-wide: 54,628
  • Since beginning of last month:
    • Site-wide: 93,019

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