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Author: Kathryn Roeder

Rankings

  • All-time downloads: 61,583 (rank: 3,966 )
  • Categories:
    • bioinformatics: 2,472 (rank: 8,454 (tie) )
    • cell biology: 709 (rank: 22,372 (tie) )
    • developmental biology: 494 (rank: 16,048 (tie) )
    • genetics: 34,404 (rank: 215 )
    • genomics: 15,940 (rank: 1,310 (tie) )
    • neurology: 2,553 (rank: 736 (tie) )
    • neuroscience: 2,236 (rank: 16,020 (tie) )
    • psychiatry and clinical psychology: 917 (rank: 2,570 (tie) )

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Preprints

Large-scale exome sequencing study implicates both developmental and functional changes in the neurobiology of autism

genetics more details view paper
  • Downloaded 11,044 times
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    • Site-wide: 1,205
    • In genetics: 24
  • Year to date:
    • Site-wide: 13,881
  • Since beginning of last month:
    • Site-wide: 16,242

Common risk variants identified in autism spectrum disorder

genetics more details view paper
  • Downloaded 9,268 times
  • Download rankings, all-time:
    • Site-wide: 1,489
    • In genetics: 31
  • Year to date:
    • Site-wide: 28,483
  • Since beginning of last month:
    • Site-wide: 22,512

New mutations, old statistical challenges

genetics more details view paper
  • Downloaded 7,328 times
  • Download rankings, all-time:
    • Site-wide: 2,014
    • In genetics: 47
  • Year to date:
    • Site-wide: 130,663
  • Since beginning of last month:
    • Site-wide: 90,340

Discovery of target genes and pathways of blood trait loci using pooled CRISPR screens and single cell RNA sequencing

genomics more details view paper
  • Downloaded 4,498 times
  • Download rankings, all-time:
    • Site-wide: 3,930
    • In genomics: 389
  • Year to date:
    • Site-wide: 2,064
  • Since beginning of last month:
    • Site-wide: 4,214

Rare coding variation illuminates the allelic architecture, risk genes, cellular expression patterns, and phenotypic context of autism

neurology more details view paper
  • Downloaded 2,766 times
  • Download rankings, all-time:
    • Site-wide: 7,988
    • In neurology: 24
  • Year to date:
    • Site-wide: 1,043
  • Since beginning of last month:
    • Site-wide: 11,085

Limited contribution of rare, noncoding variation to autism spectrum disorder from sequencing of 2,076 genomes in quartet families

genomics more details view paper
  • Downloaded 2,693 times
  • Download rankings, all-time:
    • Site-wide: 8,312
    • In genomics: 766
  • Year to date:
    • Site-wide: 138,015
  • Since beginning of last month:
    • Site-wide: 104,926

Conditional resampling improves calibration and sensitivity in single cell CRISPR screen analysis

genomics more details view paper
  • Downloaded 2,606 times
  • Download rankings, all-time:
    • Site-wide: 8,718
    • In genomics: 833
  • Year to date:
    • Site-wide: 13,384
  • Since beginning of last month:
    • Site-wide: 65,114

Gene Expression Elucidates Functional Impact of Polygenic Risk for Schizophrenia

genomics more details view paper
  • Downloaded 2,146 times
  • Download rankings, all-time:
    • Site-wide: 11,726
    • In genomics: 1,049
  • Year to date:
    • Site-wide: 126,345
  • Since beginning of last month:
    • Site-wide: 56,052

Using multiple measurements of tissue to estimate subject- and cell-type-specific gene expression

bioinformatics more details view paper
  • Downloaded 1,798 times
  • Download rankings, all-time:
    • Site-wide: 15,325
    • In bioinformatics: 1,608
  • Year to date:
    • Site-wide: 128,317
  • Since beginning of last month:
    • Site-wide: 120,467

Whole-genome and RNA sequencing reveal variation and transcriptomic coordination in the developing human prefrontal cortex

neuroscience more details view paper
  • Downloaded 1,625 times
  • Download rankings, all-time:
    • Site-wide: 17,924
    • In neuroscience: 1,910
  • Year to date:
    • Site-wide: 158,719
  • Since beginning of last month:
    • Site-wide: 92,706

Refining the role of de novo protein truncating variants in neurodevelopmental disorders using population reference samples

genetics more details view paper
  • Downloaded 1,600 times
  • Download rankings, all-time:
    • Site-wide: 18,367
    • In genetics: 731
  • Year to date:
    • Site-wide: 154,188
  • Since beginning of last month:
    • Site-wide: 55,541

Constructing Local Cell Sepcific Networks from Single Cell Data

genomics more details view paper
  • Downloaded 1,479 times
  • Download rankings, all-time:
    • Site-wide: 20,799
    • In genomics: 1,821
  • Year to date:
    • Site-wide: 8,987
  • Since beginning of last month:
    • Site-wide: 67,486

Semi-soft Clustering of Single Cell Data

genetics more details view paper
  • Downloaded 1,459 times
  • Download rankings, all-time:
    • Site-wide: 21,255
    • In genetics: 852
  • Year to date:
    • Site-wide: 110,369
  • Since beginning of last month:
    • Site-wide: 56,927

H-MAGMA, inheriting a shaky statistical foundation, yields excess false positives

genetics more details view paper
  • Downloaded 1,172 times
  • Download rankings, all-time:
    • Site-wide: 30,057
    • In genetics: 1,230
  • Year to date:
    • Site-wide: 73,080
  • Since beginning of last month:
    • Site-wide: 43,585

Exponential-family embedding with application to cell developmental trajectories for single-cell RNA-seq data

genomics more details view paper
  • Downloaded 852 times
  • Download rankings, all-time:
    • Site-wide: 49,086
    • In genomics: 3,684
  • Year to date:
    • Site-wide: 59,175
  • Since beginning of last month:
    • Site-wide: 30,381

A Unified Statistical Framework for Single Cell and Bulk RNA Sequencing Data

genetics more details view paper
  • Downloaded 849 times
  • Download rankings, all-time:
    • Site-wide: 49,272
    • In genetics: 1,884
  • Year to date:
    • Site-wide: 206,901
  • Since beginning of last month:
    • Site-wide: 141,997

A selective inference approach for FDR control using multi-omics covariates yields insights into disease risk

genetics more details view paper
  • Downloaded 848 times
  • Download rankings, all-time:
    • Site-wide: 49,394
    • In genetics: 1,942
  • Year to date:
    • Site-wide: 87,989
  • Since beginning of last month:
    • Site-wide: 81,507

Bayesian estimation of cell-type-specific gene expression per bulk sample with prior derived from single-cell data

genomics more details view paper
  • Downloaded 770 times
  • Download rankings, all-time:
    • Site-wide: 57,007
    • In genomics: 3,925
  • Year to date:
    • Site-wide: 156,749
  • Since beginning of last month:
    • Site-wide: 183,406

Identification of cell-type-specific marker genes from co-expression patterns in tissue samples

bioinformatics more details view paper
  • Downloaded 757 times
  • Download rankings, all-time:
    • Site-wide: 58,395
    • In bioinformatics: 5,751
  • Year to date:
    • Site-wide: 59,964
  • Since beginning of last month:
    • Site-wide: 52,709

Cell Type Hierarchy Reconstruction via Reconciliation of Multi-resolution Cluster Tree

cell biology more details view paper
  • Downloaded 724 times
  • Download rankings, all-time:
    • Site-wide: 62,366
    • In cell biology: 2,537
  • Year to date:
    • Site-wide: 57,768
  • Since beginning of last month:
    • Site-wide: 173,193

cFIT: Integration and transfer learning of single cell transcriptomes, illustrated by fetal brain cell development

genomics more details view paper
  • Downloaded 682 times
  • Download rankings, all-time:
    • Site-wide: 67,842
    • In genomics: 4,568
  • Year to date:
    • Site-wide: 142,125
  • Since beginning of last month:
    • Site-wide: 154,157

Functional connectome fingerprinting accuracy in youths and adults is similar when examined on the same day and 1.5 years apart

neuroscience more details view paper
  • Downloaded 649 times
  • Download rankings, all-time:
    • Site-wide: 72,643
    • In neuroscience: 9,944
  • Year to date:
    • Site-wide: 163,018
  • Since beginning of last month:
    • Site-wide: 131,676

A method to exploit the structure of genetic ancestry space to enhance case-control studies

genomics more details view paper
  • Downloaded 570 times
  • Download rankings, all-time:
    • Site-wide: 85,663
    • In genomics: 5,303
  • Year to date:
    • Site-wide: 202,551
  • Since beginning of last month:
    • Site-wide: 167,528

How rare and common risk variation jointly affect liability for autism spectrum disorder

psychiatry and clinical psychology more details view paper
  • Downloaded 554 times
  • Download rankings, all-time:
    • Site-wide: 88,693
    • In psychiatry and clinical psychology: 424
  • Year to date:
    • Site-wide: 111,062
  • Since beginning of last month:
    • Site-wide: 100,012

Expansion of RNA sequence diversity and RNA editing rates throughout human cortical development

developmental biology more details view paper
  • Downloaded 524 times
  • Download rankings, all-time:
    • Site-wide: 94,831
    • In developmental biology: 2,439
  • Year to date:
    • Site-wide: 77,974
  • Since beginning of last month:
    • Site-wide: 177,492

A data harmonization pipeline to leverage external controls and boost power in GWAS

genetics more details view paper
  • Downloaded 499 times
  • Download rankings, all-time:
    • Site-wide: 100,365
    • In genetics: 3,994
  • Year to date:
    • Site-wide: 68,963
  • Since beginning of last month:
    • Site-wide: 59,765

ESCO: single cell expression simulation incorporating gene co-expression

genetics more details view paper
  • Downloaded 418 times
  • Download rankings, all-time:
    • Site-wide: 120,038
    • In genetics: 4,490
  • Year to date:
    • Site-wide: 106,454
  • Since beginning of last month:
    • Site-wide: 172,598

The genetic architecture of obsessive-compulsive disorder: alleles across the frequency spectrum contribute liability to OCD

psychiatry and clinical psychology more details view paper
  • Downloaded 412 times
  • Download rankings, all-time:
    • Site-wide: 121,764
    • In psychiatry and clinical psychology: 649
  • Year to date:
    • Site-wide: 118,050
  • Since beginning of last month:
    • Site-wide: 158,552

Model-free Prediction Test with Application to Genomics Data

genomics more details view paper
  • Downloaded 402 times
  • Download rankings, all-time:
    • Site-wide: 124,482
    • In genomics: 8,358
  • Year to date:
    • Site-wide: 15,575
  • Since beginning of last month:
    • Site-wide: 7,316

Robust probabilistic modeling for single-cell multimodal mosaic integration and imputation via scVAEIT

genetics more details view paper
  • Downloaded 296 times
  • Download rankings, all-time:
    • Site-wide: 155,790
    • In genetics: 6,866
  • Year to date:
    • Site-wide: 25,425
  • Since beginning of last month:
    • Site-wide: 4,835

An approach to gene-based testing accounting for dependence of tests among nearby genes

genetics more details view paper
  • Downloaded 295 times
  • Download rankings, all-time:
    • Site-wide: 156,037
    • In genetics: 5,653
  • Year to date:
    • Site-wide: 147,436
  • Since beginning of last month:
    • Site-wide: 200,304

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