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Author: Richard Durbin

Rankings

  • All-time downloads: 141,125 (rank: 793 )
  • Categories:
    • bioinformatics: 19,496 (rank: 340 )
    • cell biology: 1,189 (rank: 8,350 (tie) )
    • evolutionary biology: 11,312 (rank: 173 )
    • genetics: 20,799 (rank: 501 )
    • genomics: 88,329 (rank: 113 )

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Preprints

Differential use of multiple genetic sex determination systems in divergent ecomorphs of an African crater lake cichlid

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The complete sequence of a human genome

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Genome Graphs

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The population history of northeastern Siberia since the Pleistocene

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    • Site-wide: 1,266
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Insights into human genetic variation and population history from 929 diverse genomes

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Iron Age and Anglo-Saxon genomes from East England reveal British migration history

genetics more details view paper
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Towards complete and error-free genome assemblies of all vertebrate species

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Inferring human population size and separation history from multiple genome sequences

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    • Site-wide: 2,302
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A reference panel of 64,976 haplotypes for genotype imputation

genetics more details view paper
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Sequence variation aware genome references and read mapping with the variation graph toolkit

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Efficiently inferring the demographic history of many populations with allele count data

evolutionary biology more details view paper
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    • Site-wide: 4,268
    • In evolutionary biology: 74
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Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

evolutionary biology more details view paper
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    • Site-wide: 4,572
    • In evolutionary biology: 87
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souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes

bioinformatics more details view paper
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Common genetic variation drives molecular heterogeneity in human iPSCs

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Identifying and removing haplotypic duplication in primary genome assemblies

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Placing ancient DNA sequences into reference phylogenies

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Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

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    • Site-wide: 9,733
    • In genomics: 972
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Reference-based phasing using the Haplotype Reference Consortium panel

genetics more details view paper
  • Downloaded 1,928 times
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    • Site-wide: 9,929
    • In genetics: 412
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    • Site-wide: 93,078
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Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph

genomics more details view paper
  • Downloaded 1,885 times
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    • Site-wide: 10,264
    • In genomics: 1,030
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    • Site-wide: 38,112
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A High-Quality De Novo Genome Assembly from a Single Mosquito using PacBio Sequencing

genomics more details view paper
  • Downloaded 1,744 times
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    • In genomics: 1,162
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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,663 times
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    • Site-wide: 12,380
    • In genomics: 1,251
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Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
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    • Site-wide: 13,589
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A haplotype-aware de novo assembly of related individuals using pedigree graph

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  • Downloaded 1,390 times
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    • Site-wide: 16,255
    • In bioinformatics: 1,852
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    • Site-wide: 107,542
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    • Site-wide: 148,984

Contrasting genome dynamics between domesticated and wild yeasts

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    • Site-wide: 16,736
    • In genomics: 1,623
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Transcriptome Sequencing Reveals Widespread Gene-Gene and Gene-Environment Interactions

genomics more details view paper
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    • Site-wide: 19,803
    • In genomics: 1,883
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    • Site-wide: 143,807
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trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

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    • Site-wide: 19,958
    • In bioinformatics: 2,276
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    • Site-wide: 83,123
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A direct multi-generational estimate of the human mutation rate from autozygous segments seen in thousands of parentally related individuals

genomics more details view paper
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    • Site-wide: 20,415
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Identifying extrinsic versus intrinsic drivers of variation in cell behaviour in human iPS cell lines from healthy donors

cell biology more details view paper
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    • Site-wide: 20,485
    • In cell biology: 658
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    • Site-wide: 92,764

Narrow-sense heritability estimation of complex traits using identity-by-descent information.

genetics more details view paper
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    • Site-wide: 20,613
    • In genetics: 924
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Detecting archaic introgression without archaic reference genomes

evolutionary biology more details view paper
  • Downloaded 1,139 times
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    • In evolutionary biology: 826
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    • Site-wide: 114,894
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Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies

evolutionary biology more details view paper
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Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity

evolutionary biology more details view paper
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    • Site-wide: 24,837
    • In evolutionary biology: 1,011
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Complete vertebrate mitogenomes reveal widespread gene duplications and repeats

genomics more details view paper
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    • Site-wide: 25,627
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The rate of false polymorphisms introduced when imputing genotypes from global imputation panels

genetics more details view paper
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    • Site-wide: 26,294
    • In genetics: 1,169
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Haplotype-aware graph indexes

bioinformatics more details view paper
  • Downloaded 837 times
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    • Site-wide: 34,094
    • In bioinformatics: 3,713
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A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia Illucens L.)

genomics more details view paper
  • Downloaded 758 times
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Fast and scalable genome-wide inference of local tree topologies from large number of haplotypes based on tree consistent PBWT data structure

genomics more details view paper
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Crumble: reference free lossy compression of sequence quality values

bioinformatics more details view paper
  • Downloaded 720 times
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    • In bioinformatics: 4,467
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A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning

genomics more details view paper
  • Downloaded 698 times
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    • Site-wide: 43,984
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The methylomes of Lake Malawi cichlids reveal epigenetic variation associated with phenotypic diversification

evolutionary biology more details view paper
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    • Site-wide: 44,715
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Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation

evolutionary biology more details view paper
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Pathway based factor analysis of gene expression data produces highly heritable phenotypes that associate with age

genomics more details view paper
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Substantial somatic genomic variation and selection for BCOR mutations in human induced pluripotent stem cells

genomics more details view paper
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Whole genome view of the consequences of a population bottleneck using 2926 genome sequences from Finland and United Kingdom

genetics more details view paper
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False gene and chromosome losses affected by assembly and sequence errors

genomics more details view paper
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Epigenetic Divergence during Early Stages of Speciation in an African Crater Lake Cichlid Fish

genomics more details view paper
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