Rxivist logo

Author: Richard Durbin

Rankings

  • All-time downloads: 90,051 (rank: 1,219 )
  • Categories:
    • bioinformatics: 17,310 (rank: 305 )
    • cell biology: 1,056 (rank: 6,608 (tie) )
    • evolutionary biology: 10,384 (rank: 151 )
    • genetics: 20,053 (rank: 456 )
    • genomics: 41,248 (rank: 182 )

Downloads per author, site-wide

Preprints

Genome Graphs

bioinformatics more details view paper
  • Downloaded 8,952 times
  • Download rankings, all-time:
    • Site-wide: 805
    • In bioinformatics: 44
  • Year to date:
    • Site-wide: 4,581
  • Since beginning of last month:
    • Site-wide: 9,161

Insights into human genetic variation and population history from 929 diverse genomes

genomics more details view paper
  • Downloaded 7,674 times
  • Download rankings, all-time:
    • Site-wide: 982
    • In genomics: 95
  • Year to date:
    • Site-wide: 2,733
  • Since beginning of last month:
    • Site-wide: 5,823

The population history of northeastern Siberia since the Pleistocene

genomics more details view paper
  • Downloaded 7,174 times
  • Download rankings, all-time:
    • Site-wide: 1,077
    • In genomics: 111
  • Year to date:
    • Site-wide: 1,624
  • Since beginning of last month:
    • Site-wide: 2,720

Iron Age and Anglo-Saxon genomes from East England reveal British migration history

genetics more details view paper
  • Downloaded 5,876 times
  • Download rankings, all-time:
    • Site-wide: 1,381
    • In genetics: 54
  • Year to date:
    • Site-wide: 6,116
  • Since beginning of last month:
    • Site-wide: 16,622

Inferring human population size and separation history from multiple genome sequences

genetics more details view paper
  • Downloaded 5,233 times
  • Download rankings, all-time:
    • Site-wide: 1,629
    • In genetics: 61
  • Year to date:
    • Site-wide: 66,821
  • Since beginning of last month:
    • Site-wide: 55,353

A reference panel of 64,976 haplotypes for genotype imputation

genetics more details view paper
  • Downloaded 4,562 times
  • Download rankings, all-time:
    • Site-wide: 1,971
    • In genetics: 80
  • Year to date:
    • Site-wide: 86,170
  • Since beginning of last month:
    • Site-wide: 59,796

Towards complete and error-free genome assemblies of all vertebrate species

genomics more details view paper
  • Downloaded 4,254 times
  • Download rankings, all-time:
    • Site-wide: 2,173
    • In genomics: 257
  • Year to date:
    • Site-wide: 1,682
  • Since beginning of last month:
    • Site-wide: 2,526

Sequence variation aware genome references and read mapping with the variation graph toolkit

genomics more details view paper
  • Downloaded 3,802 times
  • Download rankings, all-time:
    • Site-wide: 2,572
    • In genomics: 313
  • Year to date:
    • Site-wide: 41,382
  • Since beginning of last month:
    • Site-wide: 35,820

Efficiently inferring the demographic history of many populations with allele count data

evolutionary biology more details view paper
  • Downloaded 3,283 times
  • Download rankings, all-time:
    • Site-wide: 3,196
    • In evolutionary biology: 64
  • Year to date:
    • Site-wide: 41,090
  • Since beginning of last month:
    • Site-wide: 35,661

Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

evolutionary biology more details view paper
  • Downloaded 3,143 times
  • Download rankings, all-time:
    • Site-wide: 3,399
    • In evolutionary biology: 74
  • Year to date:
    • Site-wide: 19,034
  • Since beginning of last month:
    • Site-wide: 46,785

Common genetic variation drives molecular heterogeneity in human iPSCs

genomics more details view paper
  • Downloaded 2,794 times
  • Download rankings, all-time:
    • Site-wide: 3,989
    • In genomics: 476
  • Year to date:
    • Site-wide: 43,260
  • Since beginning of last month:
    • Site-wide: 56,178

souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes

bioinformatics more details view paper
  • Downloaded 2,581 times
  • Download rankings, all-time:
    • Site-wide: 4,492
    • In bioinformatics: 515
  • Year to date:
    • Site-wide: 13,380
  • Since beginning of last month:
    • Site-wide: 20,595

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,905 times
  • Download rankings, all-time:
    • Site-wide: 7,028
    • In genomics: 805
  • Year to date:
    • Site-wide: 83,243
  • Since beginning of last month:
    • Site-wide: 95,732

Identifying and removing haplotypic duplication in primary genome assemblies

bioinformatics more details view paper
  • Downloaded 1,888 times
  • Download rankings, all-time:
    • Site-wide: 7,125
    • In bioinformatics: 907
  • Year to date:
    • Site-wide: 5,478
  • Since beginning of last month:
    • Site-wide: 6,775

Reference-based phasing using the Haplotype Reference Consortium panel

genetics more details view paper
  • Downloaded 1,856 times
  • Download rankings, all-time:
    • Site-wide: 7,305
    • In genetics: 361
  • Year to date:
    • Site-wide: 14,892
  • Since beginning of last month:
    • Site-wide: 58,514

A High-Quality De Novo Genome Assembly from a Single Mosquito using PacBio Sequencing

genomics more details view paper
  • Downloaded 1,698 times
  • Download rankings, all-time:
    • Site-wide: 8,342
    • In genomics: 964
  • Year to date:
    • Site-wide: 72,762
  • Since beginning of last month:
    • Site-wide: 108,567

Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph

genomics more details view paper
  • Downloaded 1,687 times
  • Download rankings, all-time:
    • Site-wide: 8,445
    • In genomics: 976
  • Year to date:
    • Site-wide: 10,752
  • Since beginning of last month:
    • Site-wide: 14,631

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,495 times
  • Download rankings, all-time:
    • Site-wide: 10,126
    • In genomics: 1,149
  • Year to date:
    • Site-wide: 26,027
  • Since beginning of last month:
    • Site-wide: 36,171

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
  • Downloaded 1,445 times
  • Download rankings, all-time:
    • Site-wide: 10,637
    • In genomics: 1,208
  • Year to date:
    • Site-wide: 85,260
  • Since beginning of last month:
    • Site-wide: 85,465

A haplotype-aware de novo assembly of related individuals using pedigree graph

bioinformatics more details view paper
  • Downloaded 1,316 times
  • Download rankings, all-time:
    • Site-wide: 12,261
    • In bioinformatics: 1,541
  • Year to date:
    • Site-wide: 111,247
  • Since beginning of last month:
    • Site-wide: 100,163

Contrasting genome dynamics between domesticated and wild yeasts

genomics more details view paper
  • Downloaded 1,261 times
  • Download rankings, all-time:
    • Site-wide: 13,087
    • In genomics: 1,445
  • Year to date:
    • Site-wide: 39,362
  • Since beginning of last month:
    • Site-wide: 41,039

Transcriptome Sequencing Reveals Widespread Gene-Gene and Gene-Environment Interactions

genomics more details view paper
  • Downloaded 1,176 times
  • Download rankings, all-time:
    • Site-wide: 14,511
    • In genomics: 1,567
  • Year to date:
    • Site-wide: 98,330
  • Since beginning of last month:
    • Site-wide: 101,019

A direct multi-generational estimate of the human mutation rate from autozygous segments seen in thousands of parentally related individuals

genomics more details view paper
  • Downloaded 1,155 times
  • Download rankings, all-time:
    • Site-wide: 14,911
    • In genomics: 1,620
  • Year to date:
    • Site-wide: 94,335
  • Since beginning of last month:
    • Site-wide: 92,570

Narrow-sense heritability estimation of complex traits using identity-by-descent information.

genetics more details view paper
  • Downloaded 1,112 times
  • Download rankings, all-time:
    • Site-wide: 15,796
    • In genetics: 818
  • Year to date:
    • Site-wide: 60,381
  • Since beginning of last month:
    • Site-wide: 69,991

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 1,110 times
  • Download rankings, all-time:
    • Site-wide: 15,848
    • In bioinformatics: 1,982
  • Year to date:
    • Site-wide: 61,744
  • Since beginning of last month:
    • Site-wide: 41,484

Detecting archaic introgression without archaic reference genomes

evolutionary biology more details view paper
  • Downloaded 1,073 times
  • Download rankings, all-time:
    • Site-wide: 16,682
    • In evolutionary biology: 709
  • Year to date:
    • Site-wide: 105,881
  • Since beginning of last month:
    • Site-wide: 116,535

Identifying extrinsic versus intrinsic drivers of variation in cell behaviour in human iPS cell lines from healthy donors

cell biology more details view paper
  • Downloaded 1,056 times
  • Download rankings, all-time:
    • Site-wide: 17,093
    • In cell biology: 558
  • Year to date:
    • Site-wide: 28,395
  • Since beginning of last month:
    • Site-wide: 111,253

Placing ancient DNA sequences into reference phylogenies

genomics more details view paper
  • Downloaded 1,039 times
  • Download rankings, all-time:
    • Site-wide: 17,492
    • In genomics: 1,846
  • Year to date:
    • Site-wide: 1,480
  • Since beginning of last month:
    • Site-wide: 284

Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies

evolutionary biology more details view paper
  • Downloaded 1,021 times
  • Download rankings, all-time:
    • Site-wide: 17,963
    • In evolutionary biology: 790
  • Year to date:
    • Site-wide: 106,023
  • Since beginning of last month:
    • Site-wide: 106,662

Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity

evolutionary biology more details view paper
  • Downloaded 961 times
  • Download rankings, all-time:
    • Site-wide: 19,648
    • In evolutionary biology: 901
  • Year to date:
    • Site-wide: 81,966
  • Since beginning of last month:
    • Site-wide: 59,319

The rate of false polymorphisms introduced when imputing genotypes from global imputation panels

genetics more details view paper
  • Downloaded 943 times
  • Download rankings, all-time:
    • Site-wide: 20,164
    • In genetics: 1,013
  • Year to date:
    • Site-wide: 92,073
  • Since beginning of last month:
    • Site-wide: 79,175

Haplotype-aware graph indexes

bioinformatics more details view paper
  • Downloaded 780 times
  • Download rankings, all-time:
    • Site-wide: 26,445
    • In bioinformatics: 3,149
  • Year to date:
    • Site-wide: 49,243
  • Since beginning of last month:
    • Site-wide: 31,264

Crumble: reference free lossy compression of sequence quality values

bioinformatics more details view paper
  • Downloaded 683 times
  • Download rankings, all-time:
    • Site-wide: 31,745
    • In bioinformatics: 3,660
  • Year to date:
    • Site-wide: 114,963
  • Since beginning of last month:
    • Site-wide: 120,362

A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning

genomics more details view paper
  • Downloaded 633 times
  • Download rankings, all-time:
    • Site-wide: 35,153
    • In genomics: 3,077
  • Year to date:
    • Site-wide: 54,735
  • Since beginning of last month:
    • Site-wide: 40,372

Fast and scalable genome-wide inference of local tree topologies from large number of haplotypes based on tree consistent PBWT data structure

genomics more details view paper
  • Downloaded 622 times
  • Download rankings, all-time:
    • Site-wide: 35,969
    • In genomics: 3,124
  • Year to date:
    • Site-wide: 74,187
  • Since beginning of last month:
    • Site-wide: 60,910

Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation

evolutionary biology more details view paper
  • Downloaded 583 times
  • Download rankings, all-time:
    • Site-wide: 39,012
    • In evolutionary biology: 2,095
  • Year to date:
    • Site-wide: 93,203
  • Since beginning of last month:
    • Site-wide: 118,534

Complete vertebrate mitogenomes reveal widespread gene duplications and repeats

genomics more details view paper
  • Downloaded 559 times
  • Download rankings, all-time:
    • Site-wide: 41,100
    • In genomics: 3,423
  • Year to date:
    • Site-wide: 10,232
  • Since beginning of last month:
    • Site-wide: 8,748

Pathway based factor analysis of gene expression data produces highly heritable phenotypes that associate with age

genomics more details view paper
  • Downloaded 486 times
  • Download rankings, all-time:
    • Site-wide: 48,606
    • In genomics: 3,866
  • Year to date:
    • Site-wide: 111,252
  • Since beginning of last month:
    • Site-wide: 99,325

Whole genome view of the consequences of a population bottleneck using 2926 genome sequences from Finland and United Kingdom

genetics more details view paper
  • Downloaded 471 times
  • Download rankings, all-time:
    • Site-wide: 50,364
    • In genetics: 2,444
  • Year to date:
    • Site-wide: 120,908
  • Since beginning of last month:
    • Site-wide: 109,618

A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia Illucens L.)

genomics more details view paper
  • Downloaded 389 times
  • Download rankings, all-time:
    • Site-wide: 61,454
    • In genomics: 4,501
  • Year to date:
    • Site-wide: 7,862
  • Since beginning of last month:
    • Site-wide: 4,975

The methylomes of Lake Malawi cichlids reveal epigenetic variation associated with phenotypic diversification

evolutionary biology more details view paper
  • Downloaded 320 times
  • Download rankings, all-time:
    • Site-wide: 73,036
    • In evolutionary biology: 4,141
  • Year to date:
    • Site-wide: 12,944
  • Since beginning of last month:
    • Site-wide: 5,151

PanLingua

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News