Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,198 bioRxiv papers from 276,129 authors.

Author: Richard Durbin

Rankings

  • All-time downloads: 64,307 (rank: 181 out of 276,129)
  • Categories:
    • bioinformatics: 12,009 (rank: 202 out of 24,242)
    • cell biology: 852 (rank: 2,998 (tie) out of 18,103)
    • evolutionary biology: 8,579 (rank: 60 out of 15,087)
    • genetics: 18,302 (rank: 339 out of 27,666)
    • genomics: 24,565 (rank: 231 out of 31,834)

Downloads per author, site-wide

Preprints

Genome Graphs

bioinformatics more details view paper
  • Downloaded 7,608 times
  • Download rankings, all-time:
    • Site-wide: 175 out of 62,198
    • In bioinformatics: 31 out of 6,209
  • Year to date:
    • Site-wide: 851 out of 62,198
  • Since beginning of last month:
    • Site-wide: 1,355 out of 62,198

Iron Age and Anglo-Saxon genomes from East England reveal British migration history

genetics more details view paper
  • Downloaded 5,349 times
  • Download rankings, all-time:
    • Site-wide: 355 out of 62,198
    • In genetics: 43 out of 3,537
  • Year to date:
    • Site-wide: 9,624 out of 62,198
  • Since beginning of last month:
    • Site-wide: 7,775 out of 62,198

The population history of northeastern Siberia since the Pleistocene

genomics more details view paper
  • Downloaded 5,120 times
  • Download rankings, all-time:
    • Site-wide: 378 out of 62,198
    • In genomics: 100 out of 4,277
  • Year to date:
    • Site-wide: 321 out of 62,198
  • Since beginning of last month:
    • Site-wide: 1,616 out of 62,198

Inferring human population size and separation history from multiple genome sequences

genetics more details view paper
  • Downloaded 4,894 times
  • Download rankings, all-time:
    • Site-wide: 406 out of 62,198
    • In genetics: 46 out of 3,537
  • Year to date:
    • Site-wide: 14,291 out of 62,198
  • Since beginning of last month:
    • Site-wide: 50,849 out of 62,198

A reference panel of 64,976 haplotypes for genotype imputation

genetics more details view paper
  • Downloaded 4,434 times
  • Download rankings, all-time:
    • Site-wide: 499 out of 62,198
    • In genetics: 54 out of 3,537
  • Year to date:
    • Site-wide: 37,094 out of 62,198
  • Since beginning of last month:
    • Site-wide: 25,342 out of 62,198

Insights into human genetic variation and population history from 929 diverse genomes

genomics more details view paper
  • Downloaded 3,424 times
  • Download rankings, all-time:
    • Site-wide: 834 out of 62,198
    • In genomics: 218 out of 4,277
  • Year to date:
    • Site-wide: 131 out of 62,198
  • Since beginning of last month:
    • Site-wide: 261 out of 62,198

Sequence variation aware genome references and read mapping with the variation graph toolkit

genomics more details view paper
  • Downloaded 3,422 times
  • Download rankings, all-time:
    • Site-wide: 835 out of 62,198
    • In genomics: 219 out of 4,277
  • Year to date:
    • Site-wide: 5,466 out of 62,198
  • Since beginning of last month:
    • Site-wide: 8,655 out of 62,198

Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

evolutionary biology more details view paper
  • Downloaded 2,839 times
  • Download rankings, all-time:
    • Site-wide: 1,182 out of 62,198
    • In evolutionary biology: 46 out of 4,209
  • Year to date:
    • Site-wide: 10,086 out of 62,198
  • Since beginning of last month:
    • Site-wide: 10,029 out of 62,198

Efficiently inferring the demographic history of many populations with allele count data

evolutionary biology more details view paper
  • Downloaded 2,757 times
  • Download rankings, all-time:
    • Site-wide: 1,245 out of 62,198
    • In evolutionary biology: 51 out of 4,209
  • Year to date:
    • Site-wide: 2,254 out of 62,198
  • Since beginning of last month:
    • Site-wide: 49,174 out of 62,198

Common genetic variation drives molecular heterogeneity in human iPSCs

genomics more details view paper
  • Downloaded 2,568 times
  • Download rankings, all-time:
    • Site-wide: 1,400 out of 62,198
    • In genomics: 324 out of 4,277
  • Year to date:
    • Site-wide: 33,400 out of 62,198
  • Since beginning of last month:
    • Site-wide: 32,346 out of 62,198

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,827 times
  • Download rankings, all-time:
    • Site-wide: 2,559 out of 62,198
    • In genomics: 526 out of 4,277
  • Year to date:
    • Site-wide: 55,760 out of 62,198
  • Since beginning of last month:
    • Site-wide: 29,916 out of 62,198

Reference-based phasing using the Haplotype Reference Consortium panel

genetics more details view paper
  • Downloaded 1,639 times
  • Download rankings, all-time:
    • Site-wide: 3,078 out of 62,198
    • In genetics: 270 out of 3,537
  • Year to date:
    • Site-wide: 36,883 out of 62,198
  • Since beginning of last month:
    • Site-wide: 33,421 out of 62,198

A High-Quality De Novo Genome Assembly from a Single Mosquito using PacBio Sequencing

genomics more details view paper
  • Downloaded 1,488 times
  • Download rankings, all-time:
    • Site-wide: 3,602 out of 62,198
    • In genomics: 679 out of 4,277
  • Year to date:
    • Site-wide: 1,456 out of 62,198
  • Since beginning of last month:
    • Site-wide: 14,179 out of 62,198

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
  • Downloaded 1,156 times
  • Download rankings, all-time:
    • Site-wide: 5,488 out of 62,198
    • In genomics: 935 out of 4,277
  • Year to date:
    • Site-wide: 10,998 out of 62,198
  • Since beginning of last month:
    • Site-wide: 10,841 out of 62,198

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,124 times
  • Download rankings, all-time:
    • Site-wide: 5,747 out of 62,198
    • In genomics: 972 out of 4,277
  • Year to date:
    • Site-wide: 34,762 out of 62,198
  • Since beginning of last month:
    • Site-wide: None out of 62,198

Contrasting genome dynamics between domesticated and wild yeasts

genomics more details view paper
  • Downloaded 1,084 times
  • Download rankings, all-time:
    • Site-wide: 6,125 out of 62,198
    • In genomics: 1,022 out of 4,277
  • Year to date:
    • Site-wide: 36,153 out of 62,198
  • Since beginning of last month:
    • Site-wide: 23,849 out of 62,198

Transcriptome Sequencing Reveals Widespread Gene-Gene and Gene-Environment Interactions

genomics more details view paper
  • Downloaded 1,078 times
  • Download rankings, all-time:
    • Site-wide: 6,184 out of 62,198
    • In genomics: 1,031 out of 4,277
  • Year to date:
    • Site-wide: 57,737 out of 62,198
  • Since beginning of last month:
    • Site-wide: 46,878 out of 62,198

A direct multi-generational estimate of the human mutation rate from autozygous segments seen in thousands of parentally related individuals

genomics more details view paper
  • Downloaded 1,050 times
  • Download rankings, all-time:
    • Site-wide: 6,433 out of 62,198
    • In genomics: 1,063 out of 4,277
  • Year to date:
    • Site-wide: 52,325 out of 62,198
  • Since beginning of last month:
    • Site-wide: 32,345 out of 62,198

souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes

bioinformatics more details view paper
  • Downloaded 997 times
  • Download rankings, all-time:
    • Site-wide: 6,973 out of 62,198
    • In bioinformatics: 1,270 out of 6,209
  • Year to date:
    • Site-wide: 1,395 out of 62,198
  • Since beginning of last month:
    • Site-wide: 762 out of 62,198

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 955 times
  • Download rankings, all-time:
    • Site-wide: 7,476 out of 62,198
    • In bioinformatics: 1,352 out of 6,209
  • Year to date:
    • Site-wide: 30,182 out of 62,198
  • Since beginning of last month:
    • Site-wide: 32,429 out of 62,198

Detecting archaic introgression without archaic reference genomes

evolutionary biology more details view paper
  • Downloaded 927 times
  • Download rankings, all-time:
    • Site-wide: 7,844 out of 62,198
    • In evolutionary biology: 511 out of 4,209
  • Year to date:
    • Site-wide: 29,948 out of 62,198
  • Since beginning of last month:
    • Site-wide: 33,023 out of 62,198

Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies

evolutionary biology more details view paper
  • Downloaded 900 times
  • Download rankings, all-time:
    • Site-wide: 8,234 out of 62,198
    • In evolutionary biology: 547 out of 4,209
  • Year to date:
    • Site-wide: 48,303 out of 62,198
  • Since beginning of last month:
    • Site-wide: None out of 62,198

Narrow-sense heritability estimation of complex traits using identity-by-descent information.

genetics more details view paper
  • Downloaded 887 times
  • Download rankings, all-time:
    • Site-wide: 8,423 out of 62,198
    • In genetics: 635 out of 3,537
  • Year to date:
    • Site-wide: 15,013 out of 62,198
  • Since beginning of last month:
    • Site-wide: 19,299 out of 62,198

A haplotype-aware de novo assembly of related individuals using pedigree graph

bioinformatics more details view paper
  • Downloaded 866 times
  • Download rankings, all-time:
    • Site-wide: 8,712 out of 62,198
    • In bioinformatics: 1,537 out of 6,209
  • Year to date:
    • Site-wide: 1,784 out of 62,198
  • Since beginning of last month:
    • Site-wide: 5,492 out of 62,198

Identifying extrinsic versus intrinsic drivers of variation in cell behaviour in human iPS cell lines from healthy donors

cell biology more details view paper
  • Downloaded 852 times
  • Download rankings, all-time:
    • Site-wide: 8,942 out of 62,198
    • In cell biology: 298 out of 2,968
  • Year to date:
    • Site-wide: 18,622 out of 62,198
  • Since beginning of last month:
    • Site-wide: 51,440 out of 62,198

Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity

evolutionary biology more details view paper
  • Downloaded 825 times
  • Download rankings, all-time:
    • Site-wide: 9,410 out of 62,198
    • In evolutionary biology: 630 out of 4,209
  • Year to date:
    • Site-wide: 46,416 out of 62,198
  • Since beginning of last month:
    • Site-wide: None out of 62,198

The rate of false polymorphisms introduced when imputing genotypes from global imputation panels

genetics more details view paper
  • Downloaded 700 times
  • Download rankings, all-time:
    • Site-wide: 11,938 out of 62,198
    • In genetics: 843 out of 3,537
  • Year to date:
    • Site-wide: 42,046 out of 62,198
  • Since beginning of last month:
    • Site-wide: 22,152 out of 62,198

Crumble: reference free lossy compression of sequence quality values

bioinformatics more details view paper
  • Downloaded 561 times
  • Download rankings, all-time:
    • Site-wide: 16,218 out of 62,198
    • In bioinformatics: 2,528 out of 6,209
  • Year to date:
    • Site-wide: 49,577 out of 62,198
  • Since beginning of last month:
    • Site-wide: 47,830 out of 62,198

Haplotype-aware graph indexes

bioinformatics more details view paper
  • Downloaded 539 times
  • Download rankings, all-time:
    • Site-wide: 17,125 out of 62,198
    • In bioinformatics: 2,617 out of 6,209
  • Year to date:
    • Site-wide: 4,077 out of 62,198
  • Since beginning of last month:
    • Site-wide: 13,726 out of 62,198

Removing reference bias in ancient DNA data analysis by mapping to a sequence variation graph

genomics more details view paper
  • Downloaded 506 times
  • Download rankings, all-time:
    • Site-wide: 18,501 out of 62,198
    • In genomics: 2,218 out of 4,277
  • Year to date:
    • Site-wide: 4,534 out of 62,198
  • Since beginning of last month:
    • Site-wide: 120 out of 62,198

Identifying and removing haplotypic duplication in primary genome assemblies

bioinformatics more details view paper
  • Downloaded 483 times
  • Download rankings, all-time:
    • Site-wide: 19,610 out of 62,198
    • In bioinformatics: 2,899 out of 6,209
  • Year to date:
    • Site-wide: 4,903 out of 62,198
  • Since beginning of last month:
    • Site-wide: 1,156 out of 62,198

Whole genome view of the consequences of a population bottleneck using 2926 genome sequences from Finland and United Kingdom

genetics more details view paper
  • Downloaded 399 times
  • Download rankings, all-time:
    • Site-wide: 24,344 out of 62,198
    • In genetics: 1,603 out of 3,537
  • Year to date:
    • Site-wide: 53,280 out of 62,198
  • Since beginning of last month:
    • Site-wide: 40,233 out of 62,198

Pathway based factor analysis of gene expression data produces highly heritable phenotypes that associate with age

genomics more details view paper
  • Downloaded 393 times
  • Download rankings, all-time:
    • Site-wide: 24,780 out of 62,198
    • In genomics: 2,660 out of 4,277
  • Year to date:
    • Site-wide: 59,996 out of 62,198
  • Since beginning of last month:
    • Site-wide: None out of 62,198

Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation

evolutionary biology more details view paper
  • Downloaded 331 times
  • Download rankings, all-time:
    • Site-wide: 29,468 out of 62,198
    • In evolutionary biology: 2,269 out of 4,209
  • Year to date:
    • Site-wide: 9,153 out of 62,198
  • Since beginning of last month:
    • Site-wide: 2,887 out of 62,198

Fast and scalable genome-wide inference of local tree topologies from large number of haplotypes based on tree consistent PBWT data structure

genomics more details view paper
  • Downloaded 325 times
  • Download rankings, all-time:
    • Site-wide: 29,981 out of 62,198
    • In genomics: 2,973 out of 4,277
  • Year to date:
    • Site-wide: 9,402 out of 62,198
  • Since beginning of last month:
    • Site-wide: 50,947 out of 62,198

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News