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Author: Richard Durbin

Rankings

  • All-time downloads: 191,169 (rank: 717 )
  • Categories:
    • bioinformatics: 23,389 (rank: 364 )
    • cell biology: 1,300 (rank: 11,838 (tie) )
    • evolutionary biology: 29,495 (rank: 54 )
    • genetics: 21,642 (rank: 696 )
    • genomics: 112,629 (rank: 114 )

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Preprints

The complete sequence of a human genome

genomics more details view paper
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Population Genomics of Stone Age Eurasia

evolutionary biology more details view paper
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    • Site-wide: 871
    • In evolutionary biology: 12
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Genome Graphs

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    • In bioinformatics: 65
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The population history of northeastern Siberia since the Pleistocene

genomics more details view paper
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    • Site-wide: 1,364
    • In genomics: 87
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Insights into human genetic variation and population history from 929 diverse genomes

genomics more details view paper
  • Downloaded 8,803 times
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    • Site-wide: 1,620
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Towards complete and error-free genome assemblies of all vertebrate species

genomics more details view paper
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    • In genomics: 181
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Iron Age and Anglo-Saxon genomes from East England reveal British migration history

genetics more details view paper
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    • In genetics: 68
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Inferring human population size and separation history from multiple genome sequences

genetics more details view paper
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    • In genetics: 82
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A reference panel of 64,976 haplotypes for genotype imputation

genetics more details view paper
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    • Site-wide: 3,766
    • In genetics: 105
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Sequence variation aware genome references and read mapping with the variation graph toolkit

genomics more details view paper
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    • Site-wide: 4,550
    • In genomics: 417
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souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes

bioinformatics more details view paper
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    • Site-wide: 5,127
    • In bioinformatics: 462
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Efficiently inferring the demographic history of many populations with allele count data

evolutionary biology more details view paper
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    • Site-wide: 5,387
    • In evolutionary biology: 87
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Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

evolutionary biology more details view paper
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    • Site-wide: 5,887
    • In evolutionary biology: 100
  • Year to date:
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Identifying and removing haplotypic duplication in primary genome assemblies

bioinformatics more details view paper
  • Downloaded 3,435 times
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    • Site-wide: 6,013
    • In bioinformatics: 552
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Common genetic variation drives molecular heterogeneity in human iPSCs

genomics more details view paper
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    • Site-wide: 7,364
    • In genomics: 685
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Placing ancient DNA sequences into reference phylogenies

genomics more details view paper
  • Downloaded 2,881 times
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    • Site-wide: 7,734
    • In genomics: 727
  • Year to date:
    • Site-wide: 22,012
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Reference-based phasing using the Haplotype Reference Consortium panel

genetics more details view paper
  • Downloaded 2,089 times
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    • Site-wide: 12,599
    • In genetics: 470
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Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 2,030 times
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    • Site-wide: 13,155
    • In genomics: 1,188
  • Year to date:
    • Site-wide: 174,987
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Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph

genomics more details view paper
  • Downloaded 2,018 times
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    • Site-wide: 13,273
    • In genomics: 1,199
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    • Site-wide: 61,164
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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,925 times
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    • Site-wide: 14,277
    • In genomics: 1,299
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Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
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    • Site-wide: 15,778
    • In genomics: 1,442
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    • Site-wide: 107,551
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A High-Quality De Novo Genome Assembly from a Single Mosquito using PacBio Sequencing

genomics more details view paper
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    • Site-wide: 15,838
    • In genomics: 1,431
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    • Site-wide: 139,979
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A haplotype-aware de novo assembly of related individuals using pedigree graph

bioinformatics more details view paper
  • Downloaded 1,493 times
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    • Site-wide: 21,269
    • In bioinformatics: 2,337
  • Year to date:
    • Site-wide: 142,145
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    • Site-wide: 148,854

Contrasting genome dynamics between domesticated and wild yeasts

genomics more details view paper
  • Downloaded 1,472 times
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    • Site-wide: 21,751
    • In genomics: 1,893
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    • Site-wide: 105,539
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trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
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    • Site-wide: 26,054
    • In bioinformatics: 2,805
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    • Site-wide: 82,396
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    • Site-wide: 75,411

Identifying extrinsic versus intrinsic drivers of variation in cell behaviour in human iPS cell lines from healthy donors

cell biology more details view paper
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    • Site-wide: 26,310
    • In cell biology: 911
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    • Site-wide: 118,052

Transcriptome Sequencing Reveals Widespread Gene-Gene and Gene-Environment Interactions

genomics more details view paper
  • Downloaded 1,301 times
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    • Site-wide: 26,533
    • In genomics: 2,248
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A direct multi-generational estimate of the human mutation rate from autozygous segments seen in thousands of parentally related individuals

genomics more details view paper
  • Downloaded 1,291 times
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    • Site-wide: 26,889
    • In genomics: 2,279
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    • Site-wide: 141,705
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    • Site-wide: 152,421

Narrow-sense heritability estimation of complex traits using identity-by-descent information.

genetics more details view paper
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    • Site-wide: 27,350
    • In genetics: 1,093
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    • Site-wide: 47,590
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    • Site-wide: 178,066

Detecting archaic introgression without archaic reference genomes

evolutionary biology more details view paper
  • Downloaded 1,257 times
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    • Site-wide: 28,032
    • In evolutionary biology: 947
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The Selection Landscape and Genetic Legacy of Ancient Eurasians

evolutionary biology more details view paper
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    • Site-wide: 29,191
    • In evolutionary biology: 1,267
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Complete vertebrate mitogenomes reveal widespread gene duplications and repeats

genomics more details view paper
  • Downloaded 1,219 times
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    • Site-wide: 29,399
    • In genomics: 2,490
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Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies

evolutionary biology more details view paper
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    • Site-wide: 30,561
    • In evolutionary biology: 1,094
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Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity

evolutionary biology more details view paper
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    • Site-wide: 32,458
    • In evolutionary biology: 1,173
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The rate of false polymorphisms introduced when imputing genotypes from global imputation panels

genetics more details view paper
  • Downloaded 1,115 times
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    • Site-wide: 33,823
    • In genetics: 1,342
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YaHS: yet another Hi-C scaffolding tool

bioinformatics more details view paper
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    • Site-wide: 37,076
    • In bioinformatics: 4,134
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Substantial somatic genomic variation and selection for BCOR mutations in human induced pluripotent stem cells

genomics more details view paper
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    • Site-wide: 39,229
    • In genomics: 3,064
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A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia Illucens L.)

genomics more details view paper
  • Downloaded 972 times
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    • Site-wide: 41,814
    • In genomics: 3,214
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Differential use of multiple genetic sex determination systems in divergent ecomorphs of an African crater lake cichlid

evolutionary biology more details view paper
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    • Site-wide: 44,041
    • In evolutionary biology: 1,781
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Fast and scalable genome-wide inference of local tree topologies from large number of haplotypes based on tree consistent PBWT data structure

genomics more details view paper
  • Downloaded 936 times
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Haplotype-aware graph indexes

bioinformatics more details view paper
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    • In bioinformatics: 4,634
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The methylomes of Lake Malawi cichlids reveal epigenetic variation associated with phenotypic diversification

evolutionary biology more details view paper
  • Downloaded 808 times
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    • Site-wide: 55,361
    • In evolutionary biology: 2,302
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A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning

genomics more details view paper
  • Downloaded 772 times
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    • Site-wide: 59,273
    • In genomics: 4,154
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Crumble: reference free lossy compression of sequence quality values

bioinformatics more details view paper
  • Downloaded 770 times
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    • Site-wide: 59,514
    • In bioinformatics: 5,725
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Caecilian genomes reveal molecular basis of adaptation and convergent evolution of limblessness in snakes and caecilians.

evolutionary biology more details view paper
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    • Site-wide: 62,283
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Genomics of cold adaptations in the Antarctic notothenioid fish radiation.

genomics more details view paper
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    • Site-wide: 63,678
    • In genomics: 4,744
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Genome sequence assembly evaluation using long-range sequencing data

bioinformatics more details view paper
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    • Site-wide: 68,581
    • In bioinformatics: 6,670
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Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation

evolutionary biology more details view paper
  • Downloaded 663 times
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    • Site-wide: 73,667
    • In evolutionary biology: 3,237
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False gene and chromosome losses affected by assembly and sequence errors

genomics more details view paper
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    • In genomics: 4,975
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Pathway based factor analysis of gene expression data produces highly heritable phenotypes that associate with age

genomics more details view paper
  • Downloaded 561 times
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    • Site-wide: 91,297
    • In genomics: 5,665
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Whole genome view of the consequences of a population bottleneck using 2926 genome sequences from Finland and United Kingdom

genetics more details view paper
  • Downloaded 540 times
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    • Site-wide: 95,598
    • In genetics: 3,621
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Epigenetic Divergence during Early Stages of Speciation in an African Crater Lake Cichlid Fish

genomics more details view paper
  • Downloaded 473 times
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Ecological speciation promoted by divergent regulation of functional genes within African cichlid fishes

evolutionary biology more details view paper
  • Downloaded 454 times
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    • Site-wide: 115,640
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High resolution species assignment of Anopheles mosquitoes using k-mer distances on targeted sequences

evolutionary biology more details view paper
  • Downloaded 447 times
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    • Site-wide: 117,527
    • In evolutionary biology: 5,494
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Ultra-fast genome-wide inference of pairwise coalescence times

genetics more details view paper
  • Downloaded 327 times
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    • Site-wide: 152,338
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MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio High Fidelity reads

bioinformatics more details view paper
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