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Author: Richard Durbin

Rankings

  • All-time downloads: 130,304 (rank: 747 )
  • Categories:
    • bioinformatics: 18,839 (rank: 339 )
    • cell biology: 1,160 (rank: 7,685 (tie) )
    • evolutionary biology: 10,944 (rank: 167 )
    • genetics: 20,604 (rank: 489 )
    • genomics: 78,757 (rank: 113 )

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Preprints

The complete sequence of a human genome

genomics more details view paper
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    • Site-wide: 230
    • In genomics: 10
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Genome Graphs

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    • In bioinformatics: 50
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    • Site-wide: 11,759

Insights into human genetic variation and population history from 929 diverse genomes

genomics more details view paper
  • Downloaded 8,131 times
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    • Site-wide: 1,194
    • In genomics: 101
  • Year to date:
    • Site-wide: 7,013
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    • Site-wide: 20,156

The population history of northeastern Siberia since the Pleistocene

genomics more details view paper
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    • In genomics: 102
  • Year to date:
    • Site-wide: 2,555
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    • Site-wide: 2,728

Iron Age and Anglo-Saxon genomes from East England reveal British migration history

genetics more details view paper
  • Downloaded 6,115 times
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    • Site-wide: 1,736
    • In genetics: 58
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Towards complete and error-free genome assemblies of all vertebrate species

genomics more details view paper
  • Downloaded 5,738 times
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    • Site-wide: 1,894
    • In genomics: 166
  • Year to date:
    • Site-wide: 1,459
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    • Site-wide: 8,195

Inferring human population size and separation history from multiple genome sequences

genetics more details view paper
  • Downloaded 5,353 times
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    • Site-wide: 2,082
    • In genetics: 67
  • Year to date:
    • Site-wide: 45,359
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    • Site-wide: 69,188

A reference panel of 64,976 haplotypes for genotype imputation

genetics more details view paper
  • Downloaded 4,601 times
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    • Site-wide: 2,565
    • In genetics: 86
  • Year to date:
    • Site-wide: 107,894
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    • Site-wide: 114,986

Sequence variation aware genome references and read mapping with the variation graph toolkit

genomics more details view paper
  • Downloaded 3,913 times
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    • Site-wide: 3,253
    • In genomics: 344
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Efficiently inferring the demographic history of many populations with allele count data

evolutionary biology more details view paper
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    • Site-wide: 3,913
    • In evolutionary biology: 69
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    • Site-wide: 40,288
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Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

evolutionary biology more details view paper
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    • Site-wide: 4,236
    • In evolutionary biology: 82
  • Year to date:
    • Site-wide: 51,502
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souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes

bioinformatics more details view paper
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    • Site-wide: 4,839
    • In bioinformatics: 483
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    • Site-wide: 11,072
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    • Site-wide: 11,756

Common genetic variation drives molecular heterogeneity in human iPSCs

genomics more details view paper
  • Downloaded 2,864 times
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    • Site-wide: 5,036
    • In genomics: 518
  • Year to date:
    • Site-wide: 70,229
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    • Site-wide: 58,781

Identifying and removing haplotypic duplication in primary genome assemblies

bioinformatics more details view paper
  • Downloaded 2,502 times
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    • Site-wide: 6,150
    • In bioinformatics: 659
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    • Site-wide: 5,049
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    • Site-wide: 5,579

Placing ancient DNA sequences into reference phylogenies

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    • Site-wide: 8,637
    • In genomics: 899
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    • Site-wide: 2,571
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    • Site-wide: 5,460

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,938 times
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    • Site-wide: 8,922
    • In genomics: 926
  • Year to date:
    • Site-wide: 114,281
  • Since beginning of last month:
    • Site-wide: 122,863

Reference-based phasing using the Haplotype Reference Consortium panel

genetics more details view paper
  • Downloaded 1,906 times
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    • Site-wide: 9,169
    • In genetics: 404
  • Year to date:
    • Site-wide: 76,060
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    • Site-wide: 112,576

Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph

genomics more details view paper
  • Downloaded 1,822 times
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    • Site-wide: 9,786
    • In genomics: 1,012
  • Year to date:
    • Site-wide: 35,010
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    • Site-wide: 55,605

A High-Quality De Novo Genome Assembly from a Single Mosquito using PacBio Sequencing

genomics more details view paper
  • Downloaded 1,719 times
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    • Site-wide: 10,660
    • In genomics: 1,111
  • Year to date:
    • Site-wide: 131,207
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    • Site-wide: 113,796

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,621 times
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    • Site-wide: 11,645
    • In genomics: 1,213
  • Year to date:
    • Site-wide: 40,757
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    • Site-wide: 59,218

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
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    • Site-wide: 12,765
    • In genomics: 1,326
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    • Site-wide: 72,533
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    • Site-wide: 58,473

A haplotype-aware de novo assembly of related individuals using pedigree graph

bioinformatics more details view paper
  • Downloaded 1,366 times
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    • Site-wide: 15,010
    • In bioinformatics: 1,762
  • Year to date:
    • Site-wide: 95,866
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    • Site-wide: 80,563

Contrasting genome dynamics between domesticated and wild yeasts

genomics more details view paper
  • Downloaded 1,327 times
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    • Site-wide: 15,667
    • In genomics: 1,581
  • Year to date:
    • Site-wide: 72,488
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    • Site-wide: 81,366

Transcriptome Sequencing Reveals Widespread Gene-Gene and Gene-Environment Interactions

genomics more details view paper
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    • Site-wide: 18,195
    • In genomics: 1,793
  • Year to date:
    • Site-wide: 131,808
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    • Site-wide: 137,970

A direct multi-generational estimate of the human mutation rate from autozygous segments seen in thousands of parentally related individuals

genomics more details view paper
  • Downloaded 1,176 times
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    • Site-wide: 18,766
    • In genomics: 1,845
  • Year to date:
    • Site-wide: 135,479
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    • Site-wide: 132,119

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 1,164 times
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    • Site-wide: 19,052
    • In bioinformatics: 2,214
  • Year to date:
    • Site-wide: 85,963
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    • Site-wide: 122,761

Narrow-sense heritability estimation of complex traits using identity-by-descent information.

genetics more details view paper
  • Downloaded 1,160 times
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    • Site-wide: 19,147
    • In genetics: 899
  • Year to date:
    • Site-wide: 92,251
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    • Site-wide: 81,983

Identifying extrinsic versus intrinsic drivers of variation in cell behaviour in human iPS cell lines from healthy donors

cell biology more details view paper
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    • Site-wide: 19,146
    • In cell biology: 617
  • Year to date:
    • Site-wide: 48,924
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Detecting archaic introgression without archaic reference genomes

evolutionary biology more details view paper
  • Downloaded 1,108 times
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    • Site-wide: 20,481
    • In evolutionary biology: 797
  • Year to date:
    • Site-wide: 114,242
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    • Site-wide: 112,381

Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies

evolutionary biology more details view paper
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    • Site-wide: 22,080
    • In evolutionary biology: 901
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Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity

evolutionary biology more details view paper
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    • Site-wide: 22,960
    • In evolutionary biology: 955
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    • Site-wide: 77,377
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    • Site-wide: 86,424

The rate of false polymorphisms introduced when imputing genotypes from global imputation panels

genetics more details view paper
  • Downloaded 983 times
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    • Site-wide: 24,415
    • In genetics: 1,132
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    • Site-wide: 105,459
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    • Site-wide: 104,530

Complete vertebrate mitogenomes reveal widespread gene duplications and repeats

genomics more details view paper
  • Downloaded 938 times
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    • Site-wide: 26,120
    • In genomics: 2,420
  • Year to date:
    • Site-wide: 10,263
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    • Site-wide: 25,240

Haplotype-aware graph indexes

bioinformatics more details view paper
  • Downloaded 822 times
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    • Site-wide: 31,439
    • In bioinformatics: 3,518
  • Year to date:
    • Site-wide: 97,602
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    • Site-wide: 87,589

Crumble: reference free lossy compression of sequence quality values

bioinformatics more details view paper
  • Downloaded 705 times
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    • Site-wide: 38,928
    • In bioinformatics: 4,211
  • Year to date:
    • Site-wide: 136,137
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    • Site-wide: 139,166

A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia Illucens L.)

genomics more details view paper
  • Downloaded 704 times
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    • Site-wide: 38,986
    • In genomics: 3,221
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    • Site-wide: 12,714
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A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning

genomics more details view paper
  • Downloaded 684 times
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    • Site-wide: 40,428
    • In genomics: 3,316
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    • Site-wide: 88,435
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Fast and scalable genome-wide inference of local tree topologies from large number of haplotypes based on tree consistent PBWT data structure

genomics more details view paper
  • Downloaded 684 times
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    • Site-wide: 40,484
    • In genomics: 3,311
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    • Site-wide: 80,131
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    • Site-wide: 87,687

Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation

evolutionary biology more details view paper
  • Downloaded 599 times
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    • Site-wide: 47,851
    • In evolutionary biology: 2,408
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    • Site-wide: 142,259
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The methylomes of Lake Malawi cichlids reveal epigenetic variation associated with phenotypic diversification

evolutionary biology more details view paper
  • Downloaded 507 times
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    • Site-wide: 58,581
    • In evolutionary biology: 3,052
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Pathway based factor analysis of gene expression data produces highly heritable phenotypes that associate with age

genomics more details view paper
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Whole genome view of the consequences of a population bottleneck using 2926 genome sequences from Finland and United Kingdom

genetics more details view paper
  • Downloaded 486 times
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    • Site-wide: 61,449
    • In genetics: 2,752
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Substantial somatic genomic variation and selection for BCOR mutations in human induced pluripotent stem cells

genomics more details view paper
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False gene and chromosome losses affected by assembly and sequence errors

genomics more details view paper
  • Downloaded 270 times
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    • Site-wide: 102,157
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