Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 62,198 bioRxiv papers from 276,129 authors.

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Preprints

Genome Graphs

• Downloaded 7,608 times
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  • Site-wide: 175 out of 62,198
  • In bioinformatics: 31 out of 6,209
• Year to date:
  • Site-wide: 851 out of 62,198
• Since beginning of last month:
  • Site-wide: 1,355 out of 62,198

Iron Age and Anglo-Saxon genomes from East England reveal British migration history

• Downloaded 5,349 times
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  • Site-wide: 355 out of 62,198
  • In genetics: 43 out of 3,537
• Year to date:
  • Site-wide: 9,624 out of 62,198
• Since beginning of last month:
  • Site-wide: 7,775 out of 62,198

The population history of northeastern Siberia since the Pleistocene

• Downloaded 5,120 times
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  • Site-wide: 378 out of 62,198
  • In genomics: 100 out of 4,277
• Year to date:
  • Site-wide: 321 out of 62,198
• Since beginning of last month:
  • Site-wide: 1,616 out of 62,198

Inferring human population size and separation history from multiple genome sequences

• Downloaded 4,894 times
• Download rankings, all-time:
  • Site-wide: 406 out of 62,198
  • In genetics: 46 out of 3,537
• Year to date:
  • Site-wide: 14,291 out of 62,198
• Since beginning of last month:
  • Site-wide: 50,849 out of 62,198

A reference panel of 64,976 haplotypes for genotype imputation

• Downloaded 4,434 times
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  • Site-wide: 499 out of 62,198
  • In genetics: 54 out of 3,537
• Year to date:
  • Site-wide: 37,094 out of 62,198
• Since beginning of last month:
  • Site-wide: 25,342 out of 62,198

Insights into human genetic variation and population history from 929 diverse genomes

• Downloaded 3,424 times
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  • Site-wide: 834 out of 62,198
  • In genomics: 218 out of 4,277
• Year to date:
  • Site-wide: 131 out of 62,198
• Since beginning of last month:
  • Site-wide: 261 out of 62,198

Sequence variation aware genome references and read mapping with the variation graph toolkit

• Downloaded 3,422 times
• Download rankings, all-time:
  • Site-wide: 835 out of 62,198
  • In genomics: 219 out of 4,277
• Year to date:
  • Site-wide: 5,466 out of 62,198
• Since beginning of last month:
  • Site-wide: 8,655 out of 62,198

Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

• Downloaded 2,839 times
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  • Site-wide: 1,182 out of 62,198
  • In evolutionary biology: 46 out of 4,209
• Year to date:
  • Site-wide: 10,086 out of 62,198
• Since beginning of last month:
  • Site-wide: 10,029 out of 62,198

Efficiently inferring the demographic history of many populations with allele count data

• Downloaded 2,757 times
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  • Site-wide: 1,245 out of 62,198
  • In evolutionary biology: 51 out of 4,209
• Year to date:
  • Site-wide: 2,254 out of 62,198
• Since beginning of last month:
  • Site-wide: 49,174 out of 62,198

Common genetic variation drives molecular heterogeneity in human iPSCs

• Downloaded 2,568 times
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  • Site-wide: 1,400 out of 62,198
  • In genomics: 324 out of 4,277
• Year to date:
  • Site-wide: 33,400 out of 62,198
• Since beginning of last month:
  • Site-wide: 32,346 out of 62,198

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

• Downloaded 1,827 times
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  • Site-wide: 2,559 out of 62,198
  • In genomics: 526 out of 4,277
• Year to date:
  • Site-wide: 55,760 out of 62,198
• Since beginning of last month:
  • Site-wide: 29,916 out of 62,198

Reference-based phasing using the Haplotype Reference Consortium panel

• Downloaded 1,639 times
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  • Site-wide: 3,078 out of 62,198
  • In genetics: 270 out of 3,537
• Year to date:
  • Site-wide: 36,883 out of 62,198
• Since beginning of last month:
  • Site-wide: 33,421 out of 62,198

A High-Quality De Novo Genome Assembly from a Single Mosquito using PacBio Sequencing

• Downloaded 1,488 times
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  • Site-wide: 3,602 out of 62,198
  • In genomics: 679 out of 4,277
• Year to date:
  • Site-wide: 1,456 out of 62,198
• Since beginning of last month:
  • Site-wide: 14,179 out of 62,198

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

• Downloaded 1,156 times
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  • Site-wide: 5,488 out of 62,198
  • In genomics: 935 out of 4,277
• Year to date:
  • Site-wide: 10,998 out of 62,198
• Since beginning of last month:
  • Site-wide: 10,841 out of 62,198

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

• Downloaded 1,124 times
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  • Site-wide: 5,747 out of 62,198
  • In genomics: 972 out of 4,277
• Year to date:
  • Site-wide: 34,762 out of 62,198
• Since beginning of last month:
  • Site-wide: None out of 62,198

Contrasting genome dynamics between domesticated and wild yeasts

• Downloaded 1,084 times
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  • Site-wide: 6,125 out of 62,198
  • In genomics: 1,022 out of 4,277
• Year to date:
  • Site-wide: 36,153 out of 62,198
• Since beginning of last month:
  • Site-wide: 23,849 out of 62,198

Transcriptome Sequencing Reveals Widespread Gene-Gene and Gene-Environment Interactions

• Downloaded 1,078 times
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  • Site-wide: 6,184 out of 62,198
  • In genomics: 1,031 out of 4,277
• Year to date:
  • Site-wide: 57,737 out of 62,198
• Since beginning of last month:
  • Site-wide: 46,878 out of 62,198

A direct multi-generational estimate of the human mutation rate from autozygous segments seen in thousands of parentally related individuals

• Downloaded 1,050 times
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  • Site-wide: 6,433 out of 62,198
  • In genomics: 1,063 out of 4,277
• Year to date:
  • Site-wide: 52,325 out of 62,198
• Since beginning of last month:
  • Site-wide: 32,345 out of 62,198

souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes

• Downloaded 997 times
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  • Site-wide: 6,973 out of 62,198
  • In bioinformatics: 1,270 out of 6,209
• Year to date:
  • Site-wide: 1,395 out of 62,198
• Since beginning of last month:
  • Site-wide: 762 out of 62,198

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

• Downloaded 955 times
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  • Site-wide: 7,476 out of 62,198
  • In bioinformatics: 1,352 out of 6,209
• Year to date:
  • Site-wide: 30,182 out of 62,198
• Since beginning of last month:
  • Site-wide: 32,429 out of 62,198

Detecting archaic introgression without archaic reference genomes

• Downloaded 927 times
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  • Site-wide: 7,844 out of 62,198
  • In evolutionary biology: 511 out of 4,209
• Year to date:
  • Site-wide: 29,948 out of 62,198
• Since beginning of last month:
  • Site-wide: 33,023 out of 62,198

Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies

• Downloaded 900 times
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  • Site-wide: 8,234 out of 62,198
  • In evolutionary biology: 547 out of 4,209
• Year to date:
  • Site-wide: 48,303 out of 62,198
• Since beginning of last month:
  • Site-wide: None out of 62,198

Narrow-sense heritability estimation of complex traits using identity-by-descent information.

• Downloaded 887 times
• Download rankings, all-time:
  • Site-wide: 8,423 out of 62,198
  • In genetics: 635 out of 3,537
• Year to date:
  • Site-wide: 15,013 out of 62,198
• Since beginning of last month:
  • Site-wide: 19,299 out of 62,198

A haplotype-aware de novo assembly of related individuals using pedigree graph

• Downloaded 866 times
• Download rankings, all-time:
  • Site-wide: 8,712 out of 62,198
  • In bioinformatics: 1,537 out of 6,209
• Year to date:
  • Site-wide: 1,784 out of 62,198
• Since beginning of last month:
  • Site-wide: 5,492 out of 62,198

Identifying extrinsic versus intrinsic drivers of variation in cell behaviour in human iPS cell lines from healthy donors

• Downloaded 852 times
• Download rankings, all-time:
  • Site-wide: 8,942 out of 62,198
  • In cell biology: 298 out of 2,968
• Year to date:
  • Site-wide: 18,622 out of 62,198
• Since beginning of last month:
  • Site-wide: 51,440 out of 62,198

Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity

• Downloaded 825 times
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  • Site-wide: 9,410 out of 62,198
  • In evolutionary biology: 630 out of 4,209
• Year to date:
  • Site-wide: 46,416 out of 62,198
• Since beginning of last month:
  • Site-wide: None out of 62,198

The rate of false polymorphisms introduced when imputing genotypes from global imputation panels

• Downloaded 700 times
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  • Site-wide: 11,938 out of 62,198
  • In genetics: 843 out of 3,537
• Year to date:
  • Site-wide: 42,046 out of 62,198
• Since beginning of last month:
  • Site-wide: 22,152 out of 62,198

Crumble: reference free lossy compression of sequence quality values

• Downloaded 561 times
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  • Site-wide: 16,218 out of 62,198
  • In bioinformatics: 2,528 out of 6,209
• Year to date:
  • Site-wide: 49,577 out of 62,198
• Since beginning of last month:
  • Site-wide: 47,830 out of 62,198

Haplotype-aware graph indexes

• Downloaded 539 times
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  • Site-wide: 17,125 out of 62,198
  • In bioinformatics: 2,617 out of 6,209
• Year to date:
  • Site-wide: 4,077 out of 62,198
• Since beginning of last month:
  • Site-wide: 13,726 out of 62,198

Removing reference bias in ancient DNA data analysis by mapping to a sequence variation graph

• Downloaded 506 times
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  • Site-wide: 18,501 out of 62,198
  • In genomics: 2,218 out of 4,277
• Year to date:
  • Site-wide: 4,534 out of 62,198
• Since beginning of last month:
  • Site-wide: 120 out of 62,198

Identifying and removing haplotypic duplication in primary genome assemblies

• Downloaded 483 times
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  • Site-wide: 19,610 out of 62,198
  • In bioinformatics: 2,899 out of 6,209
• Year to date:
  • Site-wide: 4,903 out of 62,198
• Since beginning of last month:
  • Site-wide: 1,156 out of 62,198

Whole genome view of the consequences of a population bottleneck using 2926 genome sequences from Finland and United Kingdom

• Downloaded 399 times
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  • Site-wide: 24,344 out of 62,198
  • In genetics: 1,603 out of 3,537
• Year to date:
  • Site-wide: 53,280 out of 62,198
• Since beginning of last month:
  • Site-wide: 40,233 out of 62,198

Pathway based factor analysis of gene expression data produces highly heritable phenotypes that associate with age

• Downloaded 393 times
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  • Site-wide: 24,780 out of 62,198
  • In genomics: 2,660 out of 4,277
• Year to date:
  • Site-wide: 59,996 out of 62,198
• Since beginning of last month:
  • Site-wide: None out of 62,198

Ancestral hybridisation facilitated species diversification in the Lake Malawi cichlid fish adaptive radiation

• Downloaded 331 times
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  • Site-wide: 29,468 out of 62,198
  • In evolutionary biology: 2,269 out of 4,209
• Year to date:
  • Site-wide: 9,153 out of 62,198
• Since beginning of last month:
  • Site-wide: 2,887 out of 62,198

Fast and scalable genome-wide inference of local tree topologies from large number of haplotypes based on tree consistent PBWT data structure

• Downloaded 325 times
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  • Site-wide: 29,981 out of 62,198
  • In genomics: 2,973 out of 4,277
• Year to date:
  • Site-wide: 9,402 out of 62,198
• Since beginning of last month:
  • Site-wide: 50,947 out of 62,198