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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,294 bioRxiv papers from 263,837 authors.

Author: Richard Durbin

Rankings

  • All-time downloads: 60,054 (rank: 183 out of 263,837)
  • Categories:
    • bioinformatics: 10,849 (rank: 217 out of 23,107)
    • cell biology: 847 (rank: 2,694 (tie) out of 16,669)
    • evolutionary biology: 8,151 (rank: 59 out of 14,356)
    • genetics: 17,278 (rank: 373 out of 25,162)
    • genomics: 22,929 (rank: 234 out of 30,193)

Downloads per author, site-wide

Preprints

Identifying and removing haplotypic duplication in primary genome assemblies

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No bioRxiv download data for this paper yet.

Genome Graphs

bioinformatics more details view paper
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    • In bioinformatics: 31 out of 5,858
  • Year to date:
    • Site-wide: 935 out of 57,294
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    • Site-wide: 2,475 out of 57,294

Iron Age and Anglo-Saxon genomes from East England reveal British migration history

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  • Downloaded 5,287 times
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    • In genetics: 42 out of 3,275
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    • Site-wide: 8,923 out of 57,294

The population history of northeastern Siberia since the Pleistocene

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  • Downloaded 4,890 times
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    • In genomics: 99 out of 4,011
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    • Site-wide: 293 out of 57,294
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    • Site-wide: 1,159 out of 57,294

Inferring human population size and separation history from multiple genome sequences

genetics more details view paper
  • Downloaded 4,880 times
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    • In genetics: 44 out of 3,275
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    • Site-wide: 11,912 out of 57,294
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    • Site-wide: 11,246 out of 57,294

A reference panel of 64,976 haplotypes for genotype imputation

genetics more details view paper
  • Downloaded 4,417 times
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    • In genetics: 52 out of 3,275
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Sequence variation aware genome references and read mapping with the variation graph toolkit

genomics more details view paper
  • Downloaded 3,365 times
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    • In genomics: 210 out of 4,011
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    • Site-wide: 5,173 out of 57,294
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    • Site-wide: 9,990 out of 57,294

Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

evolutionary biology more details view paper
  • Downloaded 2,795 times
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    • In evolutionary biology: 45 out of 3,914
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Insights into human genetic variation and population history from 929 diverse genomes

genomics more details view paper
  • Downloaded 2,774 times
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    • In genomics: 270 out of 4,011
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    • Site-wide: 144 out of 57,294
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    • Site-wide: 30 out of 57,294

Efficiently inferring the demographic history of many populations with allele count data

evolutionary biology more details view paper
  • Downloaded 2,725 times
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    • In evolutionary biology: 50 out of 3,914
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    • Site-wide: 1,844 out of 57,294
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    • Site-wide: 3,450 out of 57,294

Common genetic variation drives molecular heterogeneity in human iPSCs

genomics more details view paper
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    • In genomics: 313 out of 4,011
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    • Site-wide: 52,017 out of 57,294

Using reference-free compressed data structures to analyse sequencing reads from thousands of human genomes

genomics more details view paper
  • Downloaded 1,815 times
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    • In genomics: 496 out of 4,011
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    • Site-wide: 48,526 out of 57,294

Reference-based phasing using the Haplotype Reference Consortium panel

genetics more details view paper
  • Downloaded 1,618 times
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    • In genetics: 263 out of 3,275
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    • Site-wide: 36,065 out of 57,294
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    • Site-wide: 40,027 out of 57,294

A High-Quality De Novo Genome Assembly from a Single Mosquito using PacBio Sequencing

genomics more details view paper
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    • Site-wide: 8,565 out of 57,294

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

genomics more details view paper
  • Downloaded 1,116 times
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    • In genomics: 920 out of 4,011
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    • Site-wide: 30,350 out of 57,294

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

genomics more details view paper
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    • In genomics: 933 out of 4,011
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    • Site-wide: 15,531 out of 57,294

Transcriptome Sequencing Reveals Widespread Gene-Gene and Gene-Environment Interactions

genomics more details view paper
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    • Site-wide: 54,799 out of 57,294

Contrasting genome dynamics between domesticated and wild yeasts

genomics more details view paper
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    • In genomics: 983 out of 4,011
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A direct multi-generational estimate of the human mutation rate from autozygous segments seen in thousands of parentally related individuals

genomics more details view paper
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    • In genomics: 1,017 out of 4,011
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    • Site-wide: 51,244 out of 57,294

trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios

bioinformatics more details view paper
  • Downloaded 938 times
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    • Site-wide: 7,119 out of 57,294
    • In bioinformatics: 1,293 out of 5,858
  • Year to date:
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    • Site-wide: 34,988 out of 57,294

Detecting archaic introgression without archaic reference genomes

evolutionary biology more details view paper
  • Downloaded 914 times
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    • In evolutionary biology: 498 out of 3,914
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    • Site-wide: 45,549 out of 57,294

Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies

evolutionary biology more details view paper
  • Downloaded 897 times
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    • In evolutionary biology: 515 out of 3,914
  • Year to date:
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    • Site-wide: 41,245 out of 57,294

Identifying extrinsic versus intrinsic drivers of variation in cell behaviour in human iPS cell lines from healthy donors

cell biology more details view paper
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    • In cell biology: 279 out of 2,721
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    • Site-wide: 21,455 out of 57,294

Purging of deleterious variants due to drift and founder effect in Italian populations with extended autozygosity

evolutionary biology more details view paper
  • Downloaded 820 times
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    • Site-wide: 8,806 out of 57,294
    • In evolutionary biology: 601 out of 3,914
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    • Site-wide: 40,576 out of 57,294
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    • Site-wide: 33,187 out of 57,294

A haplotype-aware de novo assembly of related individuals using pedigree graph

bioinformatics more details view paper
  • Downloaded 788 times
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    • In bioinformatics: 1,641 out of 5,858
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    • Site-wide: 1,580 out of 57,294
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    • Site-wide: 3,278 out of 57,294

souporcell: Robust clustering of single cell RNAseq by genotype and ambient RNA inference without reference genotypes

bioinformatics more details view paper
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    • In bioinformatics: 1,833 out of 5,858
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    • Site-wide: 110 out of 57,294

The rate of false polymorphisms introduced when imputing genotypes from global imputation panels

genetics more details view paper
  • Downloaded 684 times
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    • In genetics: 830 out of 3,275
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    • Site-wide: 37,987 out of 57,294

Crumble: reference free lossy compression of sequence quality values

bioinformatics more details view paper
  • Downloaded 556 times
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    • In bioinformatics: 2,423 out of 5,858
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  • Since beginning of last month:
    • Site-wide: 48,846 out of 57,294

Haplotype-aware graph indexes

bioinformatics more details view paper
  • Downloaded 486 times
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    • Site-wide: 18,021 out of 57,294
    • In bioinformatics: 2,719 out of 5,858
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  • Since beginning of last month:
    • Site-wide: 12,918 out of 57,294

Whole genome view of the consequences of a population bottleneck using 2926 genome sequences from Finland and United Kingdom

genetics more details view paper
  • Downloaded 392 times
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    • In genetics: 1,536 out of 3,275
  • Year to date:
    • Site-wide: 48,681 out of 57,294
  • Since beginning of last month:
    • Site-wide: 44,156 out of 57,294

Pathway based factor analysis of gene expression data produces highly heritable phenotypes that associate with age

genomics more details view paper
  • Downloaded 389 times
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    • Site-wide: 23,095 out of 57,294
    • In genomics: 2,526 out of 4,011
  • Year to date:
    • Site-wide: 55,611 out of 57,294
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    • Site-wide: 51,350 out of 57,294

Fast and scalable genome-wide inference of local tree topologies from large number of haplotypes based on tree consistent PBWT data structure

genomics more details view paper
  • Downloaded 312 times
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    • Site-wide: 28,650 out of 57,294
    • In genomics: 2,852 out of 4,011
  • Year to date:
    • Site-wide: 7,558 out of 57,294
  • Since beginning of last month:
    • Site-wide: 35,423 out of 57,294

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