Rxivist logo

Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 57,529 bioRxiv papers from 264,889 authors.

Author: Derrick W Crook

Rankings

  • All-time downloads: 21,845 (rank: 921 out of 264,889)
  • Categories:
    • bioinformatics: 5,918 (rank: 747 (tie) out of 23,134)
    • epidemiology: 308 (rank: 3,660 (tie) out of 9,583)
    • genomics: 4,266 (rank: 2,850 (tie) out of 30,302)
    • microbiology: 11,353 (rank: 10 out of 26,266)

Downloads per author, site-wide

Preprints

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

bioinformatics more details view paper
  • Downloaded 4,357 times
  • Download rankings, all-time:
    • Site-wide: 478 out of 57,529
    • In bioinformatics: 96 out of 5,865
  • Year to date:
    • Site-wide: 59 out of 57,529
  • Since beginning of last month:
    • Site-wide: 110 out of 57,529

Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis.

genomics more details view paper
  • Downloaded 3,103 times
  • Download rankings, all-time:
    • Site-wide: 932 out of 57,529
    • In genomics: 236 out of 4,030
  • Year to date:
    • Site-wide: 44,769 out of 57,529
  • Since beginning of last month:
    • Site-wide: 31,033 out of 57,529

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples.

microbiology more details view paper
  • Downloaded 1,904 times
  • Download rankings, all-time:
    • Site-wide: 2,234 out of 57,529
    • In microbiology: 49 out of 4,583
  • Year to date:
    • Site-wide: 30,972 out of 57,529
  • Since beginning of last month:
    • Site-wide: 14,275 out of 57,529

Prediction of pyrazinamide resistance in Mycobacterium tuberculosis using structure-based machine learning approaches

microbiology more details view paper
  • Downloaded 1,454 times
  • Download rankings, all-time:
    • Site-wide: 3,506 out of 57,529
    • In microbiology: 101 out of 4,583
  • Year to date:
    • Site-wide: 507 out of 57,529
  • Since beginning of last month:
    • Site-wide: 384 out of 57,529

Automated detection of bacterial growth on 96-well plates for high-throughput drug susceptibility testing of Mycobacterium tuberculosis

microbiology more details view paper
  • Downloaded 1,208 times
  • Download rankings, all-time:
    • Site-wide: 4,736 out of 57,529
    • In microbiology: 161 out of 4,583
  • Year to date:
    • Site-wide: 3,691 out of 57,529
  • Since beginning of last month:
    • Site-wide: 5,509 out of 57,529

Severe infections emerge from the microbiome by adaptive evolution

genomics more details view paper
  • Downloaded 1,163 times
  • Download rankings, all-time:
    • Site-wide: 5,024 out of 57,529
    • In genomics: 868 out of 4,030
  • Year to date:
    • Site-wide: 41,625 out of 57,529
  • Since beginning of last month:
    • Site-wide: 31,665 out of 57,529

Genomic diversity affects the accuracy of bacterial SNP calling pipelines

bioinformatics more details view paper
  • Downloaded 1,049 times
  • Download rankings, all-time:
    • Site-wide: 6,006 out of 57,529
    • In bioinformatics: 1,130 out of 5,865
  • Year to date:
    • Site-wide: 982 out of 57,529
  • Since beginning of last month:
    • Site-wide: 1,971 out of 57,529

Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing E. coli

microbiology more details view paper
  • Downloaded 967 times
  • Download rankings, all-time:
    • Site-wide: 6,851 out of 57,529
    • In microbiology: 275 out of 4,583
  • Year to date:
    • Site-wide: 29,439 out of 57,529
  • Since beginning of last month:
    • Site-wide: 20,304 out of 57,529

Validating a 14-drug microtitre plate containing bedaquiline and delamanid for large-scale research susceptibility testing of Mycobacterium tuberculosis

microbiology more details view paper
  • Downloaded 817 times
  • Download rankings, all-time:
    • Site-wide: 8,934 out of 57,529
    • In microbiology: 383 out of 4,583
  • Year to date:
    • Site-wide: 15,159 out of 57,529
  • Since beginning of last month:
    • Site-wide: 17,915 out of 57,529

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

microbiology more details view paper
  • Downloaded 798 times
  • Download rankings, all-time:
    • Site-wide: 9,255 out of 57,529
    • In microbiology: 400 out of 4,583
  • Year to date:
    • Site-wide: 1,586 out of 57,529
  • Since beginning of last month:
    • Site-wide: 7,857 out of 57,529

High rates of human faecal carriage of mcr-1-positive multi-drug resistant isolates emerge in China in association with successful plasmid families

microbiology more details view paper
  • Downloaded 677 times
  • Download rankings, all-time:
    • Site-wide: 11,692 out of 57,529
    • In microbiology: 532 out of 4,583
  • Year to date:
    • Site-wide: 37,554 out of 57,529
  • Since beginning of last month:
    • Site-wide: 22,600 out of 57,529

Metagenomic Nanopore sequencing of influenza virus direct from clinical respiratory samples

microbiology more details view paper
  • Downloaded 662 times
  • Download rankings, all-time:
    • Site-wide: 12,071 out of 57,529
    • In microbiology: 558 out of 4,583
  • Year to date:
    • Site-wide: 2,197 out of 57,529
  • Since beginning of last month:
    • Site-wide: 1,395 out of 57,529

TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

bioinformatics more details view paper
  • Downloaded 512 times
  • Download rankings, all-time:
    • Site-wide: 16,986 out of 57,529
    • In bioinformatics: 2,611 out of 5,865
  • Year to date:
    • Site-wide: 20,544 out of 57,529
  • Since beginning of last month:
    • Site-wide: 25,741 out of 57,529

Nested Russian Doll-like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC

microbiology more details view paper
  • Downloaded 439 times
  • Download rankings, all-time:
    • Site-wide: 20,427 out of 57,529
    • In microbiology: 1,097 out of 4,583
  • Year to date:
    • Site-wide: 55,053 out of 57,529
  • Since beginning of last month:
    • Site-wide: 54,583 out of 57,529

Panton-Valentine leukocidin is the key determinant of Staphylococcus aureus pyomyositis in a bacterial genome-wide association study

microbiology more details view paper
  • Downloaded 297 times
  • Download rankings, all-time:
    • Site-wide: 30,136 out of 57,529
    • In microbiology: 1,870 out of 4,583
  • Year to date:
    • Site-wide: 29,750 out of 57,529
  • Since beginning of last month:
    • Site-wide: 40,248 out of 57,529

Identifying mixed Mycobacterium tuberculosis infection and laboratory cross-contamination during Mycobacterial sequencing programs

microbiology more details view paper
  • Downloaded 280 times
  • Download rankings, all-time:
    • Site-wide: 31,647 out of 57,529
    • In microbiology: 1,988 out of 4,583
  • Year to date:
    • Site-wide: 37,013 out of 57,529
  • Since beginning of last month:
    • Site-wide: 30,313 out of 57,529

Molecular diagnosis of orthopaedic device infection direct from sonication fluid by metagenomic sequencing

microbiology more details view paper
  • Downloaded 278 times
  • Download rankings, all-time:
    • Site-wide: 31,906 out of 57,529
    • In microbiology: 2,006 out of 4,583
  • Year to date:
    • Site-wide: 53,592 out of 57,529
  • Since beginning of last month:
    • Site-wide: 54,309 out of 57,529

A role for tetracycline selection in the evolution of Clostridium difficile PCR-ribotype 078

microbiology more details view paper
  • Downloaded 246 times
  • Download rankings, all-time:
    • Site-wide: 35,050 out of 57,529
    • In microbiology: 2,273 out of 4,583
  • Year to date:
    • Site-wide: 46,001 out of 57,529
  • Since beginning of last month:
    • Site-wide: 50,560 out of 57,529

Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli

microbiology more details view paper
  • Downloaded 219 times
  • Download rankings, all-time:
    • Site-wide: 37,933 out of 57,529
    • In microbiology: 2,502 out of 4,583
  • Year to date:
    • Site-wide: 13,265 out of 57,529
  • Since beginning of last month:
    • Site-wide: 33,259 out of 57,529

Hash-based core genome multi-locus sequencing typing for Clostridium difficile

microbiology more details view paper
  • Downloaded 212 times
  • Download rankings, all-time:
    • Site-wide: 38,658 out of 57,529
    • In microbiology: 2,571 out of 4,583
  • Year to date:
    • Site-wide: 13,865 out of 57,529
  • Since beginning of last month:
    • Site-wide: 1,460 out of 57,529

Control of artefactual variation in reported inter-sample relatedness during clinical use of a Mycobacterium tuberculosis sequencing pipeline

microbiology more details view paper
  • Downloaded 207 times
  • Download rankings, all-time:
    • Site-wide: 39,257 out of 57,529
    • In microbiology: 2,626 out of 4,583
  • Year to date:
    • Site-wide: 41,175 out of 57,529
  • Since beginning of last month:
    • Site-wide: 17,941 out of 57,529

Using hospital network-based surveillance for antimicrobial resistance as a more robust alternative to self-reporting

epidemiology more details view paper
  • Downloaded 172 times
  • Download rankings, all-time:
    • Site-wide: 43,472 out of 57,529
    • In epidemiology: 850 out of 1,556
  • Year to date:
    • Site-wide: 18,304 out of 57,529
  • Since beginning of last month:
    • Site-wide: 52,222 out of 57,529

Nanopore metagenomic sequencing of full length human metapneumovirus (HMPV) within a unique sub-lineage

microbiology more details view paper
  • Downloaded 164 times
  • Download rankings, all-time:
    • Site-wide: 44,422 out of 57,529
    • In microbiology: 3,110 out of 4,583
  • Year to date:
    • Site-wide: 34,723 out of 57,529
  • Since beginning of last month:
    • Site-wide: 36,352 out of 57,529

Klebsiella quasipneumonaiae provides a window into carbapenemase gene transfer, plasmid rearrangements and nosocomial acquisition from the hospital environment

microbiology more details view paper
  • Downloaded 153 times
  • Download rankings, all-time:
    • Site-wide: 45,842 out of 57,529
    • In microbiology: 3,258 out of 4,583
  • Year to date:
    • Site-wide: 31,369 out of 57,529
  • Since beginning of last month:
    • Site-wide: 44,601 out of 57,529

The Role of fosA in Challenges with Fosfomycin Susceptibility Testing of Multispecies Klebsiella pneumoniae Carbapenemase-Producing Clinical Isolates

microbiology more details view paper
  • Downloaded 147 times
  • Download rankings, all-time:
    • Site-wide: 46,605 out of 57,529
    • In microbiology: 3,346 out of 4,583
  • Year to date:
    • Site-wide: 21,932 out of 57,529
  • Since beginning of last month:
    • Site-wide: 20,223 out of 57,529

When do big problems far away become smaller than the problems closer to home: Lessons for antimicrobial resistance from Father Ted

epidemiology more details view paper
  • Downloaded 136 times
  • Download rankings, all-time:
    • Site-wide: 47,977 out of 57,529
    • In epidemiology: 1,029 out of 1,556
  • Year to date:
    • Site-wide: 23,890 out of 57,529
  • Since beginning of last month:
    • Site-wide: 41,017 out of 57,529

M. tuberculosis microvariation is common and is associated with transmission: analysis of three years prospective universal sequencing in England

microbiology more details view paper
  • Downloaded 118 times
  • Download rankings, all-time:
    • Site-wide: 50,213 out of 57,529
    • In microbiology: 3,713 out of 4,583
  • Year to date:
    • Site-wide: 27,755 out of 57,529
  • Since beginning of last month:
    • Site-wide: 14,762 out of 57,529

Selective culture enrichment and sequencing of faeces to enhance detection of antimicrobial resistance genes

microbiology more details view paper
  • Downloaded 106 times
  • Download rankings, all-time:
    • Site-wide: 51,678 out of 57,529
    • In microbiology: 3,848 out of 4,583
  • Year to date:
    • Site-wide: 30,627 out of 57,529
  • Since beginning of last month:
    • Site-wide: 43,405 out of 57,529

Sign up for the Rxivist weekly newsletter! (Click here for more details.)


News