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Rxivist combines preprints from bioRxiv with data from Twitter to help you find the papers being discussed in your field. Currently indexing 67,125 bioRxiv papers from 295,505 authors.

Author: Derrick W Crook

Rankings

  • All-time downloads: 25,784 (rank: 848 out of 295,346)
  • Categories:
    • bioinformatics: 8,098 (rank: 444 (tie) out of 25,758)
    • epidemiology: 356 (rank: 3,744 (tie) out of 9,557)
    • genomics: 4,508 (rank: 3,061 (tie) out of 33,659)
    • microbiology: 12,822 (rank: 30 out of 30,551)

Downloads per author, site-wide

Preprints

Phenotypically distinct human sequence is widespread in publicly archived microbial reads: an evaluation of methods for its detection

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No bioRxiv download data for this paper yet.

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

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    • In bioinformatics: 51 out of 6,625
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    • Site-wide: 70 out of 67,132
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Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis.

genomics more details view paper
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Prediction of pyrazinamide resistance in Mycobacterium tuberculosis using structure-based machine learning approaches

microbiology more details view paper
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Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples.

microbiology more details view paper
  • Downloaded 1,945 times
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Automated detection of bacterial growth on 96-well plates for high-throughput drug susceptibility testing of Mycobacterium tuberculosis

microbiology more details view paper
  • Downloaded 1,402 times
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Genomic diversity affects the accuracy of bacterial SNP calling pipelines

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    • In bioinformatics: 912 out of 6,625
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Severe infections emerge from the microbiome by adaptive evolution

genomics more details view paper
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The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

microbiology more details view paper
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Metagenomic Nanopore sequencing of influenza virus direct from clinical respiratory samples

microbiology more details view paper
  • Downloaded 936 times
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    • In microbiology: 372 out of 5,414
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MinION Nanopore Sequencing of Multiple Displacement Amplified Mycobacteria DNA Direct from Sputum

microbiology more details view paper
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    • In microbiology: 385 out of 5,414
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Validating a 14-drug microtitre plate containing bedaquiline and delamanid for large-scale research susceptibility testing of Mycobacterium tuberculosis

microbiology more details view paper
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    • In microbiology: 406 out of 5,414
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High rates of human faecal carriage of mcr-1-positive multi-drug resistant isolates emerge in China in association with successful plasmid families

microbiology more details view paper
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TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

bioinformatics more details view paper
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    • In bioinformatics: 2,773 out of 6,625
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Nested Russian Doll-like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC

microbiology more details view paper
  • Downloaded 452 times
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    • Site-wide: 44,533 out of 67,132

Panton-Valentine leukocidin is the key determinant of Staphylococcus aureus pyomyositis in a bacterial genome-wide association study

microbiology more details view paper
  • Downloaded 326 times
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Identifying mixed Mycobacterium tuberculosis infection and laboratory cross-contamination during Mycobacterial sequencing programs

microbiology more details view paper
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    • In microbiology: 2,288 out of 5,414
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Molecular diagnosis of orthopaedic device infection direct from sonication fluid by metagenomic sequencing

microbiology more details view paper
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    • In microbiology: 2,299 out of 5,414
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A role for tetracycline selection in the evolution of Clostridium difficile PCR-ribotype 078

microbiology more details view paper
  • Downloaded 271 times
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    • In microbiology: 2,587 out of 5,414
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    • Site-wide: 40,028 out of 67,132

Hash-based core genome multi-locus sequencing typing for Clostridium difficile

microbiology more details view paper
  • Downloaded 270 times
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    • In microbiology: 2,599 out of 5,414
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Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli

microbiology more details view paper
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    • In microbiology: 2,727 out of 5,414
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Control of artefactual variation in reported inter-sample relatedness during clinical use of a Mycobacterium tuberculosis sequencing pipeline

microbiology more details view paper
  • Downloaded 229 times
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    • In microbiology: 3,022 out of 5,414
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Using hospital network-based surveillance for antimicrobial resistance as a more robust alternative to self-reporting

epidemiology more details view paper
  • Downloaded 194 times
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    • In epidemiology: 962 out of 1,556
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The Role of fosA in Challenges with Fosfomycin Susceptibility Testing of Multispecies Klebsiella pneumoniae Carbapenemase-Producing Clinical Isolates

microbiology more details view paper
  • Downloaded 189 times
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    • In microbiology: 3,547 out of 5,414
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Genomic epidemiology of a complex, multi-species plasmid-borne blaKPC carbapenemase outbreak in Enterobacterales in the UK, 2009-2014

genomics more details view paper
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    • In genomics: 4,001 out of 4,561
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    • Site-wide: 22,155 out of 67,132

Optimizing DNA extraction methods for Nanopore sequencing of Neisseria gonorrhoeae direct from urine samples

microbiology more details view paper
  • Downloaded 167 times
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    • In microbiology: 3,858 out of 5,414
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When do big problems far away become smaller than the problems closer to home: Lessons for antimicrobial resistance from Father Ted

epidemiology more details view paper
  • Downloaded 162 times
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    • In epidemiology: 1,112 out of 1,556
  • Year to date:
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    • Site-wide: 64,798 out of 67,132

Selective culture enrichment and sequencing of faeces to enhance detection of antimicrobial resistance genes

microbiology more details view paper
  • Downloaded 132 times
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    • Site-wide: 57,931 out of 67,132
    • In microbiology: 4,341 out of 5,414
  • Year to date:
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